Wall clock time and date at job start Tue Mar 31 2020 18:09:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17395 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 N 1.46503 * 109.47189 * 312.09870 * 3 2 1 5 5 C 1.34780 * 119.99890 * 275.16165 * 4 3 2 6 6 O 1.21283 * 120.00312 * 4.79554 * 5 4 3 7 7 C 1.50704 * 119.99916 * 184.79413 * 5 4 3 8 8 H 1.09001 * 109.54145 * 311.64921 * 7 5 4 9 9 C 1.53173 * 109.54421 * 71.82670 * 7 5 4 10 10 C 1.53083 * 109.16541 * 62.88525 * 9 7 5 11 11 O 1.42905 * 109.41770 * 57.60735 * 10 9 7 12 12 C 1.42899 * 114.09817 * 298.84799 * 11 10 9 13 13 H 1.09006 * 109.48275 * 301.16954 * 12 11 10 14 14 C 1.52999 * 109.48542 * 181.13601 * 12 11 10 15 15 C 1.53172 * 109.54290 * 191.47223 * 7 5 4 16 16 C 1.46492 * 120.00020 * 95.15995 * 4 3 2 17 17 C 1.53040 * 109.45977 * 55.73747 * 16 4 3 18 18 C 1.53196 * 109.31347 * 178.61373 * 17 16 4 19 19 N 1.46930 * 108.77133 * 54.63436 * 18 17 16 20 20 C 1.36936 * 120.62761 * 126.41584 * 19 18 17 21 21 H 1.08000 * 120.00288 * 328.69313 * 20 19 18 22 22 C 1.38818 * 120.00021 * 148.69475 * 20 19 18 23 23 N 1.31621 * 119.99814 * 348.20448 * 22 20 19 24 24 Si 1.86794 * 120.00108 * 168.20575 * 22 20 19 25 25 H 1.48508 * 109.47181 * 60.00066 * 24 22 20 26 26 H 1.48500 * 109.47159 * 179.97438 * 24 22 20 27 27 H 1.48501 * 109.47171 * 299.99928 * 24 22 20 28 28 C 1.46916 * 118.74092 * 306.38697 * 19 18 17 29 29 C 1.53041 * 109.46344 * 295.66798 * 16 4 3 30 30 H 4.40644 * 5.51372 * 180.02562 * 4 1 2 31 31 H 1.08999 * 109.47469 * 72.10002 * 3 2 1 32 32 H 1.09007 * 109.47101 * 192.10559 * 3 2 1 33 33 H 1.09000 * 109.52104 * 182.79405 * 9 7 5 34 34 H 1.09009 * 109.52084 * 302.91948 * 9 7 5 35 35 H 1.08998 * 109.48407 * 177.59153 * 10 9 7 36 36 H 1.09005 * 109.48288 * 297.62729 * 10 9 7 37 37 H 1.09002 * 109.46605 * 59.99272 * 14 12 11 38 38 H 1.08994 * 109.47884 * 179.97438 * 14 12 11 39 39 H 1.09004 * 109.46672 * 300.00174 * 14 12 11 40 40 H 1.09003 * 109.52811 * 57.01797 * 15 7 5 41 41 H 1.09002 * 109.52550 * 177.20556 * 15 7 5 42 42 H 1.09003 * 109.46239 * 175.69585 * 16 4 3 43 43 H 1.09003 * 109.49553 * 298.56568 * 17 16 4 44 44 H 1.08992 * 109.49963 * 58.66180 * 17 16 4 45 45 H 1.09000 * 109.58403 * 294.85024 * 18 17 16 46 46 H 1.09000 * 109.70286 * 174.49020 * 18 17 16 47 47 H 0.96998 * 120.00155 * 180.02562 * 23 22 20 48 48 H 1.08999 * 109.58869 * 293.82597 * 28 19 18 49 49 H 1.09000 * 109.70944 * 173.47001 * 28 19 18 50 50 H 1.08999 * 109.49519 * 301.33584 * 29 16 4 51 51 H 1.09004 * 109.49445 * 61.42900 * 29 16 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1347 -0.9251 1.0249 5 6 3.2602 -0.5119 2.3016 6 8 2.8872 0.5976 2.6194 7 6 3.8639 -1.4285 3.3344 8 1 3.3976 -2.4114 3.2667 9 6 5.3700 -1.5577 3.0871 10 6 6.0271 -0.1858 3.2595 11 8 5.7500 0.3123 4.5700 12 6 4.3594 0.4984 4.8415 13 1 3.9383 1.1976 4.1190 14 6 4.1858 1.0583 6.2547 15 6 3.6333 -0.8472 4.7327 16 6 3.4871 -2.2999 0.6620 17 6 4.5292 -2.2803 -0.4586 18 6 4.9208 -3.7187 -0.8116 19 7 3.7028 -4.4749 -1.1333 20 6 3.5976 -5.1579 -2.3155 21 1 4.1003 -4.7907 -3.1980 22 6 2.8447 -6.3224 -2.3797 23 7 2.4261 -6.8973 -1.2721 24 14 2.4258 -7.0736 -4.0378 25 1 3.6792 -7.4167 -4.7568 26 1 1.6198 -8.3041 -3.8344 27 1 1.6460 -6.0976 -4.8406 28 6 2.6003 -4.4848 -0.1624 29 6 2.2347 -3.0379 0.1833 30 1 -1.0499 -0.0003 0.0000 31 1 3.0095 -0.3150 -0.9779 32 1 3.0089 1.0057 0.2155 33 1 5.7978 -2.2592 3.8033 34 1 5.5429 -1.9206 2.0739 35 1 7.1049 -0.2797 3.1267 36 1 5.6279 0.5045 2.5164 37 1 4.7024 2.0150 6.3323 38 1 3.1252 1.2006 6.4615 39 1 4.6066 0.3586 6.9769 40 1 2.5654 -0.7014 4.8951 41 1 4.0262 -1.5343 5.4821 42 1 3.8994 -2.8109 1.5321 43 1 4.1091 -1.7915 -1.3376 44 1 5.4117 -1.7345 -0.1252 45 1 5.4232 -4.1798 0.0388 46 1 5.5882 -3.7169 -1.6734 47 1 1.9003 -7.7112 -1.3169 48 1 2.9135 -5.0084 0.7409 49 1 1.7347 -4.9872 -0.5942 50 1 1.4842 -3.0312 0.9737 51 1 1.8362 -2.5419 -0.7017 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699785487.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:09:22 Heat of formation + Delta-G solvation = -21.609801 kcal Electronic energy + Delta-G solvation = -31111.337369 eV Core-core repulsion = 27205.205569 eV Total energy + Delta-G solvation = -3906.131800 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -42.08459 -39.93269 -38.86147 -36.81900 -35.11628 -34.34368 -33.76468 -33.32448 -31.82493 -31.18861 -29.06380 -28.49948 -26.95741 -25.33439 -24.06736 -23.85720 -23.31250 -22.24211 -20.89420 -20.14541 -19.07213 -18.63610 -17.93114 -17.28646 -17.20565 -16.94372 -16.76062 -16.36243 -15.69569 -15.50286 -15.43665 -15.23425 -14.97723 -14.78681 -14.59298 -14.37385 -14.13857 -13.96141 -13.59805 -13.39542 -13.31351 -13.17530 -12.97379 -12.91489 -12.82293 -12.61003 -12.47214 -12.17084 -12.03552 -12.01571 -11.90171 -11.71806 -11.69862 -11.49581 -11.42080 -11.26549 -11.06634 -10.70139 -10.54326 -10.13140 -9.80717 -8.61725 -7.85810 -5.34849 1.37050 1.48375 1.49793 1.54250 1.55857 1.88886 2.35315 2.52004 2.88655 3.29861 3.36381 3.49397 3.63875 3.69805 3.76236 3.78056 3.96974 4.00998 4.05978 4.26019 4.30038 4.34372 4.45783 4.48511 4.49015 4.56784 4.66055 4.68485 4.70396 4.77520 4.82053 4.82319 4.92176 4.95900 5.00119 5.02044 5.04821 5.06058 5.15187 5.18187 5.24261 5.31432 5.37124 5.41603 5.56568 5.67265 5.75367 6.31960 6.34079 6.43622 6.65572 7.07461 7.18251 7.88176 8.39377 9.20109 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.017138 B = 0.003363 C = 0.003088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1633.376976 B = 8323.913537 C = 9064.043423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.226 4.226 3 C 0.221 3.779 4 N -0.595 5.595 5 C 0.521 3.479 6 O -0.562 6.562 7 C -0.114 4.114 8 H 0.105 0.895 9 C -0.145 4.145 10 C 0.061 3.939 11 O -0.395 6.395 12 C 0.068 3.932 13 H 0.070 0.930 14 C -0.139 4.139 15 C -0.124 4.124 16 C 0.149 3.851 17 C -0.130 4.130 18 C 0.145 3.855 19 N -0.609 5.609 20 C -0.261 4.261 21 H 0.066 0.934 22 C -0.046 4.046 23 N -0.933 5.933 24 Si 0.962 3.038 25 H -0.275 1.275 26 H -0.296 1.296 27 H -0.281 1.281 28 C 0.185 3.815 29 C -0.130 4.130 30 H 0.241 0.759 31 H 0.114 0.886 32 H 0.102 0.898 33 H 0.097 0.903 34 H 0.091 0.909 35 H 0.115 0.885 36 H 0.035 0.965 37 H 0.060 0.940 38 H 0.077 0.923 39 H 0.066 0.934 40 H 0.071 0.929 41 H 0.090 0.910 42 H 0.103 0.897 43 H 0.062 0.938 44 H 0.090 0.910 45 H 0.026 0.974 46 H 0.060 0.940 47 H 0.249 0.751 48 H 0.005 0.995 49 H 0.051 0.949 50 H 0.051 0.949 51 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.986 13.835 9.783 17.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.228 4.228 3 C 0.099 3.901 4 N -0.325 5.325 5 C 0.311 3.689 6 O -0.442 6.442 7 C -0.135 4.135 8 H 0.123 0.877 9 C -0.182 4.182 10 C -0.016 4.016 11 O -0.314 6.314 12 C 0.011 3.989 13 H 0.088 0.912 14 C -0.196 4.196 15 C -0.162 4.162 16 C 0.047 3.953 17 C -0.170 4.170 18 C 0.019 3.981 19 N -0.333 5.333 20 C -0.392 4.392 21 H 0.084 0.916 22 C -0.242 4.242 23 N -0.579 5.579 24 Si 0.791 3.209 25 H -0.201 1.201 26 H -0.223 1.223 27 H -0.207 1.207 28 C 0.058 3.942 29 C -0.170 4.170 30 H 0.257 0.743 31 H 0.131 0.869 32 H 0.120 0.880 33 H 0.116 0.884 34 H 0.109 0.891 35 H 0.133 0.867 36 H 0.053 0.947 37 H 0.079 0.921 38 H 0.095 0.905 39 H 0.085 0.915 40 H 0.089 0.911 41 H 0.109 0.891 42 H 0.121 0.879 43 H 0.081 0.919 44 H 0.109 0.891 45 H 0.044 0.956 46 H 0.079 0.921 47 H 0.058 0.942 48 H 0.023 0.977 49 H 0.069 0.931 50 H 0.070 0.930 51 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 3.890 14.311 10.092 17.938 hybrid contribution -1.176 -0.981 -1.248 1.976 sum 2.714 13.330 8.844 16.225 Atomic orbital electron populations 1.25648 0.96893 0.99588 0.99218 1.23972 0.95825 1.01370 1.01586 1.18351 0.83510 0.94997 0.93227 1.48239 1.63916 1.12663 1.07682 1.21040 0.77293 0.87595 0.82980 1.90583 1.50802 1.23013 1.79761 1.21487 0.98241 0.99593 0.94182 0.87721 1.22272 0.91917 0.99367 1.04672 1.22618 1.01646 0.93130 0.84185 1.87856 1.24962 1.85781 1.32826 1.22532 0.81249 0.96294 0.98837 0.91203 1.21737 1.02479 1.01330 0.94075 1.22039 1.01483 0.97929 0.94744 1.21267 0.95086 0.79872 0.99096 1.22302 0.98519 0.98389 0.97758 1.21033 0.88448 0.90098 0.98547 1.44254 1.12888 1.57506 1.18603 1.19434 1.29347 1.02129 0.88242 0.91628 1.25822 1.02140 0.96656 0.99541 1.70107 1.40722 1.19929 1.27163 0.85429 0.77950 0.77270 0.80290 1.20058 1.22275 1.20672 1.20472 0.91615 0.91227 0.90842 1.22327 0.96984 0.97851 0.99807 0.74282 0.86858 0.88027 0.88400 0.89090 0.86729 0.94658 0.92111 0.90451 0.91470 0.91075 0.89137 0.87942 0.91934 0.89114 0.95576 0.92140 0.94184 0.97730 0.93085 0.93029 0.93244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -5.22 19.25 74.32 1.43 -3.79 16 2 C -0.23 -6.61 12.53 31.13 0.39 -6.22 16 3 C 0.22 5.76 5.22 84.57 0.44 6.20 16 4 N -0.59 -15.69 2.36 -808.14 -1.91 -17.60 16 5 C 0.52 14.13 5.65 87.66 0.50 14.62 16 6 O -0.56 -18.00 13.25 -3.04 -0.04 -18.04 16 7 C -0.11 -2.57 2.16 -11.42 -0.02 -2.59 16 8 H 0.10 2.30 6.99 -2.39 -0.02 2.29 16 9 C -0.14 -2.77 5.26 30.68 0.16 -2.61 16 10 C 0.06 1.25 6.62 72.01 0.48 1.73 16 11 O -0.39 -9.59 10.41 -148.98 -1.55 -11.14 16 12 C 0.07 1.60 2.98 30.69 0.09 1.69 16 13 H 0.07 2.00 5.42 -2.38 -0.01 1.99 16 14 C -0.14 -2.63 9.56 71.98 0.69 -1.94 16 15 C -0.12 -2.69 4.63 30.75 0.14 -2.55 16 16 C 0.15 4.17 1.58 45.02 0.07 4.24 16 17 C -0.13 -3.54 5.03 30.67 0.15 -3.39 16 18 C 0.14 5.11 6.52 86.36 0.56 5.68 16 19 N -0.61 -28.00 2.98 -699.10 -2.09 -30.09 16 20 C -0.26 -13.56 9.58 84.03 0.80 -12.76 16 21 H 0.07 3.31 7.86 -2.91 -0.02 3.29 16 22 C -0.05 -2.46 5.02 84.86 0.43 -2.04 16 23 N -0.93 -53.12 11.11 21.65 0.24 -52.88 16 24 Si 0.96 43.49 29.57 68.60 2.03 45.52 16 25 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 26 H -0.30 -13.59 7.11 99.48 0.71 -12.89 16 27 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 28 C 0.18 8.29 5.25 86.36 0.45 8.74 16 29 C -0.13 -4.56 4.99 30.67 0.15 -4.41 16 30 H 0.24 4.58 7.80 -4.42 -0.03 4.55 16 31 H 0.11 2.71 6.24 -2.39 -0.01 2.70 16 32 H 0.10 2.54 7.66 -2.38 -0.02 2.52 16 33 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 34 H 0.09 1.67 5.64 -2.38 -0.01 1.65 16 35 H 0.11 1.87 8.14 -2.39 -0.02 1.85 16 36 H 0.04 0.81 7.38 -2.38 -0.02 0.80 16 37 H 0.06 1.12 8.14 -2.39 -0.02 1.11 16 38 H 0.08 1.30 8.14 -2.39 -0.02 1.29 16 39 H 0.07 1.15 8.14 -2.38 -0.02 1.13 16 40 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 41 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 42 H 0.10 2.70 4.65 -2.39 -0.01 2.69 16 43 H 0.06 1.78 6.58 -2.39 -0.02 1.76 16 44 H 0.09 1.92 7.56 -2.39 -0.02 1.91 16 45 H 0.03 0.91 8.14 -2.39 -0.02 0.89 16 46 H 0.06 2.11 7.93 -2.39 -0.02 2.09 16 47 H 0.25 13.89 8.31 -92.71 -0.77 13.12 16 48 H 0.00 0.22 8.14 -2.39 -0.02 0.20 16 49 H 0.05 2.69 6.14 -2.39 -0.01 2.67 16 50 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 51 H 0.05 1.86 7.30 -2.38 -0.02 1.84 16 Total: -1.00 -65.04 387.71 4.51 -60.52 By element: Atomic # 1 Polarization: 22.20 SS G_CDS: 0.91 Total: 23.11 kcal Atomic # 6 Polarization: -6.32 SS G_CDS: 6.92 Total: 0.60 kcal Atomic # 7 Polarization: -96.81 SS G_CDS: -3.75 Total: -100.57 kcal Atomic # 8 Polarization: -27.59 SS G_CDS: -1.59 Total: -29.18 kcal Atomic # 14 Polarization: 43.49 SS G_CDS: 2.03 Total: 45.52 kcal Total: -65.04 4.51 -60.52 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699785487.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.911 kcal (2) G-P(sol) polarization free energy of solvation -65.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.520 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds