Wall clock time and date at job start Tue Mar 31 2020 19:34:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42895 * 113.99941 * 2 1 4 4 H 1.08999 * 109.47661 * 16.21915 * 3 2 1 5 5 C 1.50702 * 109.47484 * 136.22101 * 3 2 1 6 6 O 1.21283 * 119.99742 * 4.81083 * 5 3 2 7 7 N 1.34776 * 120.00219 * 184.81099 * 5 3 2 8 8 C 1.46497 * 119.99763 * 184.97829 * 7 5 3 9 9 C 1.50707 * 109.46869 * 180.02562 * 8 7 5 10 10 C 1.38236 * 119.99734 * 269.72052 * 9 8 7 11 11 C 1.38230 * 119.99749 * 179.76336 * 10 9 8 12 12 C 1.38237 * 120.00015 * 0.51417 * 11 10 9 13 13 C 1.50706 * 120.00109 * 179.71946 * 12 11 10 14 14 H 1.08996 * 109.46964 * 200.02143 * 13 12 11 15 15 C 1.53000 * 109.46720 * 80.02136 * 13 12 11 16 16 N 1.46504 * 109.46765 * 320.02302 * 13 12 11 17 17 C 1.36936 * 119.99352 * 204.99628 * 16 13 12 18 18 H 1.07994 * 120.00403 * 0.02562 * 17 16 13 19 19 C 1.38819 * 119.99673 * 180.02562 * 17 16 13 20 20 N 1.31616 * 119.99811 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99826 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.46906 * 90.00411 * 21 19 17 23 23 H 1.48499 * 109.47005 * 209.99904 * 21 19 17 24 24 H 1.48495 * 109.47231 * 330.00208 * 21 19 17 25 25 C 1.38233 * 120.00146 * 359.74624 * 12 11 10 26 26 C 1.38225 * 119.99990 * 90.00080 * 9 8 7 27 27 C 1.53005 * 109.47180 * 256.22109 * 3 2 1 28 28 C 1.53003 * 109.47071 * 305.52331 * 27 3 2 29 29 C 1.53005 * 109.46937 * 65.52246 * 27 3 2 30 30 H 1.09009 * 109.47293 * 175.34388 * 1 2 3 31 31 H 1.09004 * 109.47532 * 55.34738 * 1 2 3 32 32 H 1.08999 * 109.47475 * 295.34097 * 1 2 3 33 33 H 0.96998 * 120.00097 * 4.97001 * 7 5 3 34 34 H 1.08999 * 109.47000 * 299.99523 * 8 7 5 35 35 H 1.08998 * 109.47349 * 60.00132 * 8 7 5 36 36 H 1.08008 * 119.99980 * 0.02562 * 10 9 8 37 37 H 1.08002 * 120.00467 * 180.23331 * 11 10 9 38 38 H 1.08996 * 109.47408 * 299.99735 * 15 13 12 39 39 H 1.08999 * 109.46736 * 60.00265 * 15 13 12 40 40 H 1.09000 * 109.46715 * 180.02562 * 15 13 12 41 41 H 0.96996 * 120.00342 * 25.00343 * 16 13 12 42 42 H 0.97003 * 119.99292 * 180.02562 * 20 19 17 43 43 H 1.07989 * 120.00426 * 179.97438 * 25 12 11 44 44 H 1.08000 * 120.00134 * 359.97438 * 26 9 8 45 45 H 1.09002 * 109.47115 * 185.52682 * 27 3 2 46 46 H 1.09002 * 109.46978 * 64.32946 * 28 27 3 47 47 H 1.08998 * 109.47202 * 184.33295 * 28 27 3 48 48 H 1.09003 * 109.47075 * 304.33393 * 28 27 3 49 49 H 1.09000 * 109.46746 * 296.75328 * 29 27 3 50 50 H 1.08997 * 109.47013 * 56.75765 * 29 27 3 51 51 H 1.09002 * 109.46917 * 176.75916 * 29 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3054 0.0000 4 1 1.2565 2.0387 0.2870 5 6 3.1516 1.3472 0.9830 6 8 3.4954 0.3352 1.5564 7 7 3.7905 2.5090 1.2250 8 6 4.9681 2.5297 2.0962 9 6 5.4897 3.9396 2.2022 10 6 6.4384 4.3947 1.3056 11 6 6.9133 5.6895 1.3998 12 6 6.4474 6.5257 2.3971 13 6 6.9698 7.9353 2.5037 14 1 6.7835 8.3169 3.5075 15 6 6.2571 8.8220 1.4806 16 7 8.4104 7.9436 2.2376 17 6 9.1957 8.9412 2.7508 18 1 8.7531 9.7216 3.3519 19 6 10.5607 8.9493 2.4983 20 7 11.0999 7.9985 1.7652 21 14 11.6317 10.3106 3.1977 22 1 12.1335 9.9074 4.5359 23 1 12.7819 10.5513 2.2898 24 1 10.8314 11.5551 3.3233 25 6 5.5027 6.0689 3.2970 26 6 5.0239 4.7757 3.1994 27 6 2.5315 1.6316 -1.4010 28 6 3.4863 0.5276 -1.8597 29 6 1.3545 1.7249 -2.3742 30 1 -0.3634 -1.0243 -0.0834 31 1 -0.3634 0.5843 -0.8454 32 1 -0.3634 0.4398 0.9287 33 1 3.4706 3.3314 0.8223 34 1 4.6932 2.1690 3.0873 35 1 5.7416 1.8863 1.6769 36 1 6.8054 3.7400 0.5289 37 1 7.6517 6.0464 0.6971 38 1 6.4434 8.4404 0.4767 39 1 5.1852 8.8158 1.6786 40 1 6.6352 9.8414 1.5574 41 1 8.8080 7.2425 1.6979 42 1 12.0538 8.0041 1.5891 43 1 5.1390 6.7220 4.0763 44 1 4.2858 4.4188 3.9024 45 1 3.0611 2.5840 -1.3790 46 1 2.9384 -0.4099 -1.9557 47 1 3.9169 0.7972 -2.8241 48 1 4.2837 0.4089 -1.1261 49 1 0.8597 0.7558 -2.4398 50 1 0.6455 2.4714 -2.0164 51 1 1.7199 2.0137 -3.3597 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700094012.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:34:42 Heat of formation + Delta-G solvation = -58.370956 kcal Electronic energy + Delta-G solvation = -28468.534997 eV Core-core repulsion = 24560.809114 eV Total energy + Delta-G solvation = -3907.725883 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -40.49595 -39.37255 -38.05280 -35.96883 -35.09201 -34.41001 -32.36229 -30.76498 -30.48932 -28.88102 -28.25179 -27.48662 -26.52859 -25.27253 -23.87547 -22.61357 -21.75980 -21.43418 -20.30742 -19.74257 -17.95653 -17.42476 -17.19195 -16.41271 -15.88612 -15.59723 -15.41621 -15.12897 -14.75357 -14.46752 -14.39753 -14.25069 -13.83044 -13.56746 -13.42576 -13.33196 -13.07787 -13.02094 -12.77720 -12.52443 -12.39797 -12.33111 -12.00091 -11.92434 -11.66678 -11.55852 -11.42402 -11.25337 -11.10748 -10.93992 -10.86130 -10.65133 -10.37836 -10.31454 -10.02340 -9.70849 -9.63884 -9.25167 -9.00250 -8.67006 -8.34289 -7.02614 -5.81139 -3.10010 1.42960 1.65804 2.39565 2.77325 3.41080 3.46179 3.47823 3.62430 4.04280 4.28360 4.34344 4.49551 4.55854 4.66832 4.74907 4.83596 4.96724 4.97200 5.02677 5.19343 5.19400 5.28693 5.29254 5.34308 5.37390 5.45349 5.53526 5.57210 5.61587 5.69662 5.70745 5.75283 5.86191 5.93670 5.99186 6.06409 6.19448 6.22264 6.28262 6.32383 6.46840 6.58758 6.64984 6.69078 6.74575 6.91929 7.13010 7.24419 7.31221 7.66101 8.02623 8.37121 9.48537 10.03894 10.39025 11.41447 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.022888 B = 0.001978 C = 0.001962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1223.069063 B =14154.481381 C =14267.906241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.352 6.352 3 C 0.076 3.924 4 H 0.086 0.914 5 C 0.509 3.491 6 O -0.521 6.521 7 N -0.723 5.723 8 C 0.168 3.832 9 C -0.130 4.130 10 C -0.098 4.098 11 C -0.106 4.106 12 C -0.053 4.053 13 C 0.203 3.797 14 H 0.056 0.944 15 C -0.159 4.159 16 N -0.721 5.721 17 C -0.240 4.240 18 H 0.071 0.929 19 C -0.013 4.013 20 N -0.932 5.932 21 Si 0.908 3.092 22 H -0.290 1.290 23 H -0.291 1.291 24 H -0.282 1.282 25 C -0.122 4.122 26 C -0.102 4.102 27 C -0.107 4.107 28 C -0.142 4.142 29 C -0.149 4.149 30 H 0.089 0.911 31 H 0.047 0.953 32 H 0.042 0.958 33 H 0.401 0.599 34 H 0.074 0.926 35 H 0.074 0.926 36 H 0.119 0.881 37 H 0.128 0.872 38 H 0.048 0.952 39 H 0.037 0.963 40 H 0.057 0.943 41 H 0.385 0.615 42 H 0.256 0.744 43 H 0.121 0.879 44 H 0.117 0.883 45 H 0.084 0.916 46 H 0.065 0.935 47 H 0.056 0.944 48 H 0.055 0.945 49 H 0.061 0.939 50 H 0.054 0.946 51 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.096 -12.321 -6.149 26.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.270 6.270 3 C 0.014 3.986 4 H 0.104 0.896 5 C 0.293 3.707 6 O -0.396 6.396 7 N -0.377 5.377 8 C 0.045 3.955 9 C -0.131 4.131 10 C -0.117 4.117 11 C -0.124 4.124 12 C -0.054 4.054 13 C 0.094 3.906 14 H 0.074 0.926 15 C -0.219 4.219 16 N -0.364 5.364 17 C -0.371 4.371 18 H 0.089 0.911 19 C -0.209 4.209 20 N -0.580 5.580 21 Si 0.739 3.261 22 H -0.217 1.217 23 H -0.218 1.218 24 H -0.207 1.207 25 C -0.140 4.140 26 C -0.121 4.121 27 C -0.126 4.126 28 C -0.200 4.200 29 C -0.206 4.206 30 H 0.108 0.892 31 H 0.065 0.935 32 H 0.060 0.940 33 H 0.236 0.764 34 H 0.092 0.908 35 H 0.092 0.908 36 H 0.137 0.863 37 H 0.146 0.854 38 H 0.067 0.933 39 H 0.056 0.944 40 H 0.076 0.924 41 H 0.220 0.780 42 H 0.066 0.934 43 H 0.139 0.861 44 H 0.135 0.865 45 H 0.103 0.897 46 H 0.084 0.916 47 H 0.075 0.925 48 H 0.074 0.926 49 H 0.080 0.920 50 H 0.073 0.927 51 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -22.624 -13.116 -5.651 26.755 hybrid contribution 0.533 1.218 0.053 1.331 sum -22.091 -11.898 -5.598 25.708 Atomic orbital electron populations 1.22995 0.80877 1.03238 1.00144 1.88036 1.19427 1.24840 1.94657 1.22065 0.94720 0.87256 0.94510 0.89597 1.20584 0.83877 0.83563 0.82633 1.90727 1.65562 1.33739 1.49552 1.46107 1.30808 1.09946 1.50819 1.20147 0.86796 0.93705 0.94803 1.19636 1.00154 0.95058 0.98233 1.21019 0.96458 0.95869 0.98343 1.21090 0.99357 0.93264 0.98688 1.20537 0.94116 0.97251 0.93496 1.19253 0.85914 0.88343 0.97122 0.92636 1.22419 0.98085 1.01207 1.00224 1.42523 1.00560 1.31076 1.62197 1.19236 0.89385 1.02815 1.25698 0.91068 1.24751 0.96797 0.98672 1.00665 1.69657 1.11405 1.34159 1.42753 0.86181 0.80292 0.81397 0.78258 1.21701 1.21764 1.20739 1.21015 0.97993 0.95684 0.99324 1.20924 0.99693 0.93757 0.97711 1.21540 0.97698 1.00311 0.93050 1.21719 0.98779 0.98514 1.00941 1.21901 0.97450 1.02044 0.99232 0.89230 0.93477 0.93968 0.76430 0.90798 0.90764 0.86312 0.85376 0.93332 0.94358 0.92385 0.77987 0.93444 0.86140 0.86511 0.89742 0.91641 0.92510 0.92589 0.91962 0.92653 0.91863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.15 10.36 101.05 1.05 1.20 16 2 O -0.35 -3.56 8.80 -55.09 -0.48 -4.04 16 3 C 0.08 0.65 2.35 -27.88 -0.07 0.59 16 4 H 0.09 0.53 7.67 -51.93 -0.40 0.14 16 5 C 0.51 5.79 6.11 -10.99 -0.07 5.73 16 6 O -0.52 -8.24 16.51 -14.31 -0.24 -8.48 16 7 N -0.72 -6.96 5.41 -61.47 -0.33 -7.29 16 8 C 0.17 1.87 5.81 -5.19 -0.03 1.84 16 9 C -0.13 -1.59 5.25 -104.62 -0.55 -2.14 16 10 C -0.10 -1.33 9.70 -39.59 -0.38 -1.71 16 11 C -0.11 -1.71 9.06 -39.58 -0.36 -2.07 16 12 C -0.05 -0.88 4.95 -104.62 -0.52 -1.40 16 13 C 0.20 3.93 3.09 -69.08 -0.21 3.72 16 14 H 0.06 1.09 7.94 -51.93 -0.41 0.67 16 15 C -0.16 -2.77 9.47 37.16 0.35 -2.41 16 16 N -0.72 -17.60 5.07 -54.55 -0.28 -17.87 16 17 C -0.24 -6.53 9.93 -15.06 -0.15 -6.68 16 18 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 19 C -0.01 -0.36 5.50 -17.43 -0.10 -0.45 16 20 N -0.93 -27.72 13.06 55.49 0.72 -27.00 16 21 Si 0.91 22.12 29.55 -169.99 -5.02 17.09 16 22 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 23 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 24 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 25 C -0.12 -1.72 9.67 -39.58 -0.38 -2.11 16 26 C -0.10 -1.26 9.70 -39.58 -0.38 -1.65 16 27 C -0.11 -0.77 2.73 -90.61 -0.25 -1.02 16 28 C -0.14 -1.25 8.80 37.16 0.33 -0.92 16 29 C -0.15 -0.83 8.19 37.16 0.30 -0.53 16 30 H 0.09 0.48 8.14 -51.92 -0.42 0.06 16 31 H 0.05 0.22 6.32 -51.93 -0.33 -0.11 16 32 H 0.04 0.24 8.14 -51.93 -0.42 -0.18 16 33 H 0.40 3.04 8.32 -40.82 -0.34 2.70 16 34 H 0.07 0.85 8.08 -51.93 -0.42 0.43 16 35 H 0.07 0.87 8.08 -51.93 -0.42 0.45 16 36 H 0.12 1.42 8.06 -52.48 -0.42 1.00 16 37 H 0.13 2.25 6.92 -52.49 -0.36 1.88 16 38 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 39 H 0.04 0.56 8.14 -51.93 -0.42 0.13 16 40 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 41 H 0.38 9.90 6.06 -40.82 -0.25 9.66 16 42 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 43 H 0.12 1.52 8.04 -52.49 -0.42 1.10 16 44 H 0.12 1.20 8.06 -52.49 -0.42 0.78 16 45 H 0.08 0.54 7.89 -51.93 -0.41 0.13 16 46 H 0.06 0.61 7.70 -51.93 -0.40 0.21 16 47 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 48 H 0.06 0.60 7.27 -51.93 -0.38 0.22 16 49 H 0.06 0.36 6.76 -51.93 -0.35 0.01 16 50 H 0.05 0.25 8.14 -51.93 -0.42 -0.17 16 51 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 LS Contribution 414.85 15.07 6.25 6.25 Total: -1.00 -32.97 414.85 -9.46 -42.43 By element: Atomic # 1 Polarization: 17.59 SS G_CDS: -8.66 Total: 8.92 kcal Atomic # 6 Polarization: -8.60 SS G_CDS: -1.42 Total: -10.02 kcal Atomic # 7 Polarization: -52.27 SS G_CDS: 0.12 Total: -52.16 kcal Atomic # 8 Polarization: -11.80 SS G_CDS: -0.72 Total: -12.52 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 6.25 Total: 6.25 kcal Total: -32.97 -9.46 -42.43 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700094012.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.944 kcal (2) G-P(sol) polarization free energy of solvation -32.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.427 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds