Wall clock time and date at job start Tue Mar 31 2020 20:25:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35905 * 117.00090 * 2 1 4 4 C 1.38733 * 120.05300 * 179.97438 * 3 2 1 5 5 C 1.38148 * 119.94039 * 179.97438 * 4 3 2 6 6 C 1.38264 * 120.05489 * 359.97438 * 5 4 3 7 7 C 1.50702 * 119.94571 * 180.02562 * 6 5 4 8 8 C 1.53002 * 109.46939 * 89.99811 * 7 6 5 9 9 H 1.09001 * 109.47423 * 305.00640 * 8 7 6 10 10 C 1.53002 * 109.46836 * 65.00469 * 8 7 6 11 11 C 1.50700 * 109.47316 * 185.00233 * 8 7 6 12 12 O 1.21284 * 119.99756 * 0.02562 * 11 8 7 13 13 N 1.34771 * 120.00158 * 179.72825 * 11 8 7 14 14 C 1.46505 * 120.00182 * 180.27700 * 13 11 8 15 15 H 1.09006 * 109.46691 * 324.99745 * 14 13 11 16 16 C 1.52996 * 109.46946 * 84.99788 * 14 13 11 17 17 C 1.52995 * 109.47183 * 205.00215 * 14 13 11 18 18 N 1.46502 * 109.47308 * 54.99722 * 17 14 13 19 19 C 1.46494 * 119.99689 * 269.99796 * 18 17 14 20 20 C 1.36929 * 120.00017 * 90.00290 * 18 17 14 21 21 H 1.08003 * 120.00230 * 23.82583 * 20 18 17 22 22 C 1.38810 * 120.00146 * 203.82643 * 20 18 17 23 23 N 1.31622 * 120.00053 * 10.87399 * 22 20 18 24 24 Si 1.86802 * 120.00212 * 190.87024 * 22 20 18 25 25 H 1.48500 * 109.46869 * 90.00225 * 24 22 20 26 26 H 1.48506 * 109.46924 * 210.00147 * 24 22 20 27 27 H 1.48500 * 109.46949 * 330.00189 * 24 22 20 28 28 C 1.38271 * 120.11455 * 0.27569 * 6 5 4 29 29 C 1.38146 * 120.05108 * 359.45170 * 28 6 5 30 30 H 1.09001 * 109.47267 * 180.02562 * 1 2 3 31 31 H 1.08993 * 109.47014 * 300.00303 * 1 2 3 32 32 H 1.09000 * 109.47002 * 60.00087 * 1 2 3 33 33 H 1.07996 * 120.03250 * 359.95463 * 4 3 2 34 34 H 1.07999 * 119.96941 * 179.97438 * 5 4 3 35 35 H 1.09006 * 109.47056 * 330.00589 * 7 6 5 36 36 H 1.08991 * 109.47463 * 210.00198 * 7 6 5 37 37 H 1.09001 * 109.46975 * 59.99896 * 10 8 7 38 38 H 1.09000 * 109.47324 * 180.02562 * 10 8 7 39 39 H 1.08999 * 109.47060 * 300.00083 * 10 8 7 40 40 H 0.97001 * 120.00270 * 0.27709 * 13 11 8 41 41 H 1.09002 * 109.47305 * 300.00011 * 16 14 13 42 42 H 1.08992 * 109.47317 * 60.00599 * 16 14 13 43 43 H 1.09003 * 109.46780 * 180.02562 * 16 14 13 44 44 H 1.09003 * 109.47172 * 174.99789 * 17 14 13 45 45 H 1.09010 * 109.46950 * 294.99564 * 17 14 13 46 46 H 1.08999 * 109.47230 * 94.93874 * 19 18 17 47 47 H 1.09003 * 109.47122 * 214.92928 * 19 18 17 48 48 H 1.08997 * 109.47785 * 334.93834 * 19 18 17 49 49 H 0.96999 * 120.00274 * 179.97438 * 23 22 20 50 50 H 1.07996 * 119.97190 * 179.70322 * 28 6 5 51 51 H 1.08000 * 120.02686 * 180.27349 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 3.4314 1.2848 0.0005 5 6 4.0562 2.5169 0.0000 6 6 3.3020 3.6757 -0.0016 7 6 3.9861 5.0185 -0.0028 8 6 4.2183 5.4713 -1.4457 9 1 4.7712 4.7013 -1.9837 10 6 2.8699 5.7034 -2.1305 11 6 5.0105 6.7533 -1.4487 12 8 5.3558 7.2551 -0.3999 13 7 5.3403 7.3389 -2.6168 14 6 6.1157 8.5820 -2.6198 15 1 5.8272 9.1922 -1.7638 16 6 7.6072 8.2529 -2.5321 17 6 5.8385 9.3528 -3.9120 18 7 4.3958 9.5638 -4.0549 19 6 3.5770 8.5739 -4.7590 20 6 3.8128 10.6864 -3.5306 21 1 4.4044 11.5744 -3.3637 22 6 2.4614 10.6830 -3.2135 23 7 1.7885 9.5518 -3.2121 24 14 1.5977 12.2839 -2.7887 25 1 1.0514 12.8953 -4.0269 26 1 0.4881 12.0111 -1.8401 27 1 2.5669 13.2179 -2.1614 28 6 1.9211 3.6048 0.0031 29 6 1.2916 2.3751 -0.0021 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 4.0209 0.3799 0.0017 34 1 5.1346 2.5750 0.0008 35 1 4.9439 4.9388 0.5115 36 1 3.3579 5.7468 0.5100 37 1 2.3170 6.4735 -1.5926 38 1 3.0352 6.0256 -3.1586 39 1 2.2969 4.7762 -2.1284 40 1 5.0644 6.9375 -3.4556 41 1 7.8047 7.7038 -1.6115 42 1 7.8956 7.6428 -3.3880 43 1 8.1841 9.1778 -2.5339 44 1 6.3449 10.3174 -3.8755 45 1 6.2081 8.7804 -4.7629 46 1 3.1421 7.8825 -4.0371 47 1 2.7796 9.0816 -5.3016 48 1 4.1999 8.0208 -5.4619 49 1 0.8443 9.5493 -2.9902 50 1 1.3343 4.5114 0.0067 51 1 0.2130 2.3202 -0.0029 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733068506.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:25:16 Heat of formation + Delta-G solvation = -40.668449 kcal Electronic energy + Delta-G solvation = -29577.774753 eV Core-core repulsion = 25670.816508 eV Total energy + Delta-G solvation = -3906.958245 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -40.32369 -39.41541 -37.86497 -36.35527 -34.35011 -33.91568 -31.37322 -31.14665 -30.54816 -29.55213 -27.69570 -26.24279 -26.01075 -25.59051 -23.55945 -22.67424 -21.71007 -20.92284 -20.00440 -19.28273 -18.25575 -16.80947 -16.72605 -16.33282 -15.91243 -15.52442 -15.20393 -14.91380 -14.71560 -14.27224 -13.94802 -13.81838 -13.74436 -13.50944 -13.28891 -13.17803 -12.77875 -12.59961 -12.40816 -12.15557 -12.09405 -11.85565 -11.72353 -11.41822 -11.31382 -11.26743 -11.03214 -10.91975 -10.82905 -10.77552 -10.65913 -10.63425 -10.49617 -10.16457 -9.92870 -9.84094 -9.12596 -8.99895 -8.56856 -8.27585 -8.11931 -6.72135 -5.71506 -3.17522 1.28126 1.35953 3.10743 3.31945 3.39125 3.46033 3.46823 3.65163 3.93365 4.51664 4.67769 4.78180 4.90049 4.90973 4.91469 5.14841 5.20653 5.22746 5.32114 5.36404 5.40707 5.45138 5.51269 5.59445 5.67868 5.76146 5.87582 5.91747 6.03183 6.07257 6.13039 6.14675 6.17481 6.24473 6.28831 6.31690 6.41672 6.50499 6.57224 6.64882 6.67075 6.70737 6.74348 6.93489 7.25742 7.26822 7.34346 7.69759 7.81793 8.23586 8.40660 8.93918 9.24621 9.86657 10.35302 11.33165 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.013094 B = 0.002923 C = 0.002570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2137.948432 B = 9575.719742 C =10894.069877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.322 6.322 3 C 0.116 3.884 4 C -0.152 4.152 5 C -0.079 4.079 6 C -0.107 4.107 7 C -0.057 4.057 8 C -0.102 4.102 9 H 0.087 0.913 10 C -0.140 4.140 11 C 0.522 3.478 12 O -0.555 6.555 13 N -0.698 5.698 14 C 0.117 3.883 15 H 0.084 0.916 16 C -0.158 4.158 17 C 0.143 3.857 18 N -0.597 5.597 19 C 0.159 3.841 20 C -0.254 4.254 21 H 0.067 0.933 22 C 0.006 3.994 23 N -0.902 5.902 24 Si 0.903 3.097 25 H -0.289 1.289 26 H -0.292 1.292 27 H -0.280 1.280 28 C -0.071 4.071 29 C -0.206 4.206 30 H 0.097 0.903 31 H 0.054 0.946 32 H 0.055 0.945 33 H 0.127 0.873 34 H 0.128 0.872 35 H 0.077 0.923 36 H 0.078 0.922 37 H 0.068 0.932 38 H 0.065 0.935 39 H 0.058 0.942 40 H 0.394 0.606 41 H 0.051 0.949 42 H 0.048 0.952 43 H 0.059 0.941 44 H 0.057 0.943 45 H 0.040 0.960 46 H 0.037 0.963 47 H 0.041 0.959 48 H -0.007 1.007 49 H 0.250 0.750 50 H 0.128 0.872 51 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.777 -17.445 2.879 17.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.235 6.235 3 C 0.071 3.929 4 C -0.170 4.170 5 C -0.097 4.097 6 C -0.107 4.107 7 C -0.095 4.095 8 C -0.123 4.123 9 H 0.105 0.895 10 C -0.197 4.197 11 C 0.308 3.692 12 O -0.434 6.434 13 N -0.346 5.346 14 C 0.009 3.991 15 H 0.102 0.898 16 C -0.218 4.218 17 C 0.015 3.985 18 N -0.319 5.319 19 C 0.014 3.986 20 C -0.384 4.384 21 H 0.084 0.916 22 C -0.192 4.192 23 N -0.547 5.547 24 Si 0.733 3.267 25 H -0.217 1.217 26 H -0.218 1.218 27 H -0.206 1.206 28 C -0.090 4.090 29 C -0.224 4.224 30 H 0.116 0.884 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.145 0.855 34 H 0.146 0.854 35 H 0.095 0.905 36 H 0.097 0.903 37 H 0.087 0.913 38 H 0.084 0.916 39 H 0.077 0.923 40 H 0.228 0.772 41 H 0.070 0.930 42 H 0.067 0.933 43 H 0.078 0.922 44 H 0.075 0.925 45 H 0.058 0.942 46 H 0.055 0.945 47 H 0.060 0.940 48 H 0.011 0.989 49 H 0.060 0.940 50 H 0.146 0.854 51 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 1.907 -17.274 3.628 17.754 hybrid contribution -1.105 0.783 -0.115 1.359 sum 0.802 -16.491 3.513 16.880 Atomic orbital electron populations 1.23029 0.78549 1.03704 1.01446 1.86043 1.21271 1.27205 1.89008 1.19021 0.92384 0.84019 0.97480 1.20375 0.91289 0.98532 1.06827 1.20885 0.99850 0.90947 0.97982 1.19874 0.93546 0.95297 1.02002 1.20342 1.01055 0.92569 0.95509 1.21239 0.97910 0.95482 0.97709 0.89450 1.21808 0.94830 1.01896 1.01208 1.20375 0.79083 0.85808 0.83933 1.90631 1.55544 1.65598 1.31641 1.45780 1.55204 1.25671 1.07989 1.21823 0.88552 0.85727 1.02976 0.89783 1.22149 0.97187 1.01291 1.01135 1.21191 0.87022 0.97373 0.92963 1.43858 1.01545 1.23209 1.63268 1.20913 0.92526 0.91833 0.93286 1.19158 0.92864 0.89783 1.36581 0.91571 1.24999 0.97913 0.96591 0.99727 1.70022 1.08248 1.23608 1.52839 0.86285 0.79343 0.83342 0.77717 1.21663 1.21831 1.20598 1.20963 0.94172 0.97122 0.96698 1.21226 0.99925 0.92356 1.08937 0.88441 0.92719 0.92601 0.85487 0.85388 0.90458 0.90301 0.91303 0.91650 0.92291 0.77210 0.93028 0.93297 0.92240 0.92460 0.94154 0.94468 0.94026 0.98893 0.93983 0.85443 0.85640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 9.81 101.05 0.99 1.19 16 2 O -0.32 -3.49 10.50 -19.44 -0.20 -3.70 16 3 C 0.12 1.35 6.69 -39.22 -0.26 1.09 16 4 C -0.15 -1.70 9.99 -39.43 -0.39 -2.10 16 5 C -0.08 -0.89 9.69 -39.61 -0.38 -1.27 16 6 C -0.11 -1.33 4.71 -104.60 -0.49 -1.83 16 7 C -0.06 -0.81 4.19 -27.88 -0.12 -0.92 16 8 C -0.10 -1.51 2.71 -91.77 -0.25 -1.76 16 9 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 10 C -0.14 -2.16 8.67 37.16 0.32 -1.84 16 11 C 0.52 9.72 7.12 -10.99 -0.08 9.64 16 12 O -0.56 -12.26 15.58 5.55 0.09 -12.17 16 13 N -0.70 -12.56 4.31 -53.81 -0.23 -12.79 16 14 C 0.12 2.19 2.88 -67.93 -0.20 2.00 16 15 H 0.08 1.93 7.58 -51.93 -0.39 1.53 16 16 C -0.16 -2.41 9.48 37.16 0.35 -2.06 16 17 C 0.14 2.76 5.33 -4.04 -0.02 2.73 16 18 N -0.60 -14.12 2.78 -181.12 -0.50 -14.62 16 19 C 0.16 3.60 7.59 59.84 0.45 4.05 16 20 C -0.25 -6.81 9.66 -15.06 -0.15 -6.95 16 21 H 0.07 1.77 7.85 -52.48 -0.41 1.35 16 22 C 0.01 0.17 5.14 -17.43 -0.09 0.08 16 23 N -0.90 -25.09 10.64 55.49 0.59 -24.50 16 24 Si 0.90 21.90 29.57 -169.99 -5.03 16.87 16 25 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 26 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 27 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 28 C -0.07 -0.87 7.97 -39.60 -0.32 -1.19 16 29 C -0.21 -2.31 9.04 -39.43 -0.36 -2.67 16 30 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.05 0.35 7.66 -51.93 -0.40 -0.05 16 32 H 0.06 0.37 7.66 -51.93 -0.40 -0.03 16 33 H 0.13 1.22 8.06 -52.49 -0.42 0.80 16 34 H 0.13 1.23 8.06 -52.49 -0.42 0.81 16 35 H 0.08 1.10 7.90 -51.93 -0.41 0.69 16 36 H 0.08 1.23 8.08 -51.93 -0.42 0.81 16 37 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 38 H 0.06 1.06 6.28 -51.93 -0.33 0.73 16 39 H 0.06 0.80 6.28 -51.93 -0.33 0.47 16 40 H 0.39 6.57 6.61 -40.82 -0.27 6.30 16 41 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 42 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 43 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 44 H 0.06 1.09 8.03 -51.93 -0.42 0.67 16 45 H 0.04 0.69 7.86 -51.92 -0.41 0.28 16 46 H 0.04 0.88 5.61 -51.93 -0.29 0.58 16 47 H 0.04 1.04 7.33 -51.93 -0.38 0.66 16 48 H -0.01 -0.14 7.84 -51.93 -0.41 -0.55 16 49 H 0.25 6.86 8.31 -40.82 -0.34 6.52 16 50 H 0.13 1.51 8.05 -52.49 -0.42 1.09 16 51 H 0.13 1.16 6.30 -52.49 -0.33 0.83 16 LS Contribution 405.56 15.07 6.11 6.11 Total: -1.00 -31.51 405.56 -8.68 -40.20 By element: Atomic # 1 Polarization: 14.92 SS G_CDS: -8.53 Total: 6.40 kcal Atomic # 6 Polarization: -0.82 SS G_CDS: -0.98 Total: -1.80 kcal Atomic # 7 Polarization: -51.76 SS G_CDS: -0.14 Total: -51.91 kcal Atomic # 8 Polarization: -15.75 SS G_CDS: -0.12 Total: -15.87 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.03 Total: 16.87 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -31.51 -8.68 -40.20 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733068506.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.471 kcal (2) G-P(sol) polarization free energy of solvation -31.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.198 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds