Wall clock time and date at job start Tue Mar 31 2020 20:25:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35905 * 117.00090 * 2 1 4 4 C 1.38733 * 120.05300 * 179.97438 * 3 2 1 5 5 C 1.38148 * 119.94039 * 179.97438 * 4 3 2 6 6 C 1.38264 * 120.05489 * 359.97438 * 5 4 3 7 7 C 1.50702 * 119.94571 * 180.02562 * 6 5 4 8 8 C 1.53002 * 109.46939 * 89.99811 * 7 6 5 9 9 H 1.09001 * 109.47423 * 305.00640 * 8 7 6 10 10 C 1.53002 * 109.46836 * 65.00469 * 8 7 6 11 11 C 1.50700 * 109.47316 * 185.00233 * 8 7 6 12 12 O 1.21284 * 119.99756 * 0.02562 * 11 8 7 13 13 N 1.34771 * 120.00158 * 179.72825 * 11 8 7 14 14 C 1.46505 * 120.00182 * 180.27700 * 13 11 8 15 15 H 1.09006 * 109.46691 * 324.99745 * 14 13 11 16 16 C 1.52996 * 109.46946 * 84.99788 * 14 13 11 17 17 C 1.52995 * 109.47183 * 205.00215 * 14 13 11 18 18 N 1.46502 * 109.47308 * 54.99722 * 17 14 13 19 19 C 1.46494 * 119.99689 * 269.99796 * 18 17 14 20 20 C 1.36929 * 120.00017 * 90.00290 * 18 17 14 21 21 H 1.08003 * 120.00230 * 23.82583 * 20 18 17 22 22 C 1.38810 * 120.00146 * 203.82643 * 20 18 17 23 23 N 1.31622 * 120.00053 * 10.87399 * 22 20 18 24 24 Si 1.86802 * 120.00212 * 190.87024 * 22 20 18 25 25 H 1.48500 * 109.46869 * 90.00225 * 24 22 20 26 26 H 1.48506 * 109.46924 * 210.00147 * 24 22 20 27 27 H 1.48500 * 109.46949 * 330.00189 * 24 22 20 28 28 C 1.38271 * 120.11455 * 0.27569 * 6 5 4 29 29 C 1.38146 * 120.05108 * 359.45170 * 28 6 5 30 30 H 1.09001 * 109.47267 * 180.02562 * 1 2 3 31 31 H 1.08993 * 109.47014 * 300.00303 * 1 2 3 32 32 H 1.09000 * 109.47002 * 60.00087 * 1 2 3 33 33 H 1.07996 * 120.03250 * 359.95463 * 4 3 2 34 34 H 1.07999 * 119.96941 * 179.97438 * 5 4 3 35 35 H 1.09006 * 109.47056 * 330.00589 * 7 6 5 36 36 H 1.08991 * 109.47463 * 210.00198 * 7 6 5 37 37 H 1.09001 * 109.46975 * 59.99896 * 10 8 7 38 38 H 1.09000 * 109.47324 * 180.02562 * 10 8 7 39 39 H 1.08999 * 109.47060 * 300.00083 * 10 8 7 40 40 H 0.97001 * 120.00270 * 0.27709 * 13 11 8 41 41 H 1.09002 * 109.47305 * 300.00011 * 16 14 13 42 42 H 1.08992 * 109.47317 * 60.00599 * 16 14 13 43 43 H 1.09003 * 109.46780 * 180.02562 * 16 14 13 44 44 H 1.09003 * 109.47172 * 174.99789 * 17 14 13 45 45 H 1.09010 * 109.46950 * 294.99564 * 17 14 13 46 46 H 1.08999 * 109.47230 * 94.93874 * 19 18 17 47 47 H 1.09003 * 109.47122 * 214.92928 * 19 18 17 48 48 H 1.08997 * 109.47785 * 334.93834 * 19 18 17 49 49 H 0.96999 * 120.00274 * 179.97438 * 23 22 20 50 50 H 1.07996 * 119.97190 * 179.70322 * 28 6 5 51 51 H 1.08000 * 120.02686 * 180.27349 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 3.4314 1.2848 0.0005 5 6 4.0562 2.5169 0.0000 6 6 3.3020 3.6757 -0.0016 7 6 3.9861 5.0185 -0.0028 8 6 4.2183 5.4713 -1.4457 9 1 4.7712 4.7013 -1.9837 10 6 2.8699 5.7034 -2.1305 11 6 5.0105 6.7533 -1.4487 12 8 5.3558 7.2551 -0.3999 13 7 5.3403 7.3389 -2.6168 14 6 6.1157 8.5820 -2.6198 15 1 5.8272 9.1922 -1.7638 16 6 7.6072 8.2529 -2.5321 17 6 5.8385 9.3528 -3.9120 18 7 4.3958 9.5638 -4.0549 19 6 3.5770 8.5739 -4.7590 20 6 3.8128 10.6864 -3.5306 21 1 4.4044 11.5744 -3.3637 22 6 2.4614 10.6830 -3.2135 23 7 1.7885 9.5518 -3.2121 24 14 1.5977 12.2839 -2.7887 25 1 1.0514 12.8953 -4.0269 26 1 0.4881 12.0111 -1.8401 27 1 2.5669 13.2179 -2.1614 28 6 1.9211 3.6048 0.0031 29 6 1.2916 2.3751 -0.0021 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 4.0209 0.3799 0.0017 34 1 5.1346 2.5750 0.0008 35 1 4.9439 4.9388 0.5115 36 1 3.3579 5.7468 0.5100 37 1 2.3170 6.4735 -1.5926 38 1 3.0352 6.0256 -3.1586 39 1 2.2969 4.7762 -2.1284 40 1 5.0644 6.9375 -3.4556 41 1 7.8047 7.7038 -1.6115 42 1 7.8956 7.6428 -3.3880 43 1 8.1841 9.1778 -2.5339 44 1 6.3449 10.3174 -3.8755 45 1 6.2081 8.7804 -4.7629 46 1 3.1421 7.8825 -4.0371 47 1 2.7796 9.0816 -5.3016 48 1 4.1999 8.0208 -5.4619 49 1 0.8443 9.5493 -2.9902 50 1 1.3343 4.5114 0.0067 51 1 0.2130 2.3202 -0.0029 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733068506.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:25:15 Heat of formation + Delta-G solvation = -58.494562 kcal Electronic energy + Delta-G solvation = -29578.547752 eV Core-core repulsion = 25670.816508 eV Total energy + Delta-G solvation = -3907.731243 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -41.27821 -40.74533 -38.81670 -37.98698 -35.75963 -35.46891 -33.07535 -32.07249 -31.96821 -30.75119 -28.42677 -27.95840 -27.37196 -27.13295 -24.86992 -23.53669 -23.30024 -22.14422 -21.47275 -20.66455 -19.04860 -18.74885 -18.10917 -17.16776 -17.12965 -16.74982 -16.60557 -16.20047 -16.03526 -15.57249 -15.39865 -15.19113 -14.86294 -14.74346 -14.66000 -14.39714 -14.20622 -13.76906 -13.73446 -13.47472 -13.20584 -13.09600 -12.96582 -12.83126 -12.77299 -12.66822 -12.52880 -12.33075 -12.27352 -12.20378 -12.01756 -11.96921 -11.80114 -11.70637 -11.66276 -11.58410 -10.62825 -10.55363 -9.91503 -9.82740 -9.01389 -8.66312 -7.77753 -5.23960 0.41408 0.44801 1.43949 1.45640 1.52367 1.83971 2.40551 2.45774 2.53396 2.82335 3.35367 3.70977 3.78621 3.83229 3.96169 3.98496 4.08652 4.17644 4.28289 4.32309 4.40102 4.42726 4.46990 4.51030 4.53203 4.60043 4.70223 4.76717 4.79210 4.84334 4.87649 4.90419 4.94345 4.95985 5.03470 5.13805 5.19948 5.24900 5.34642 5.35568 5.41831 5.41998 5.43592 5.69252 5.75578 5.80424 5.84038 5.89005 6.38538 6.46850 6.78296 7.22376 7.48042 7.93837 8.34858 9.23325 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.013094 B = 0.002923 C = 0.002570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2137.948432 B = 9575.719742 C =10894.069877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.334 6.334 3 C 0.110 3.890 4 C -0.157 4.157 5 C -0.076 4.076 6 C -0.117 4.117 7 C -0.048 4.048 8 C -0.091 4.091 9 H 0.119 0.881 10 C -0.126 4.126 11 C 0.513 3.487 12 O -0.596 6.596 13 N -0.693 5.693 14 C 0.122 3.878 15 H 0.034 0.966 16 C -0.145 4.145 17 C 0.142 3.858 18 N -0.611 5.611 19 C 0.170 3.830 20 C -0.260 4.260 21 H 0.062 0.938 22 C -0.045 4.045 23 N -0.920 5.920 24 Si 0.955 3.045 25 H -0.285 1.285 26 H -0.300 1.300 27 H -0.277 1.277 28 C -0.083 4.083 29 C -0.208 4.208 30 H 0.120 0.880 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.143 0.857 34 H 0.146 0.854 35 H 0.075 0.925 36 H 0.053 0.947 37 H 0.031 0.969 38 H 0.058 0.942 39 H 0.079 0.921 40 H 0.402 0.598 41 H 0.039 0.961 42 H 0.076 0.924 43 H 0.073 0.927 44 H 0.060 0.940 45 H 0.074 0.926 46 H 0.024 0.976 47 H 0.009 0.991 48 H 0.032 0.968 49 H 0.243 0.757 50 H 0.122 0.878 51 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.720 -19.282 1.871 19.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.248 6.248 3 C 0.065 3.935 4 C -0.175 4.175 5 C -0.094 4.094 6 C -0.118 4.118 7 C -0.086 4.086 8 C -0.112 4.112 9 H 0.137 0.863 10 C -0.184 4.184 11 C 0.301 3.699 12 O -0.478 6.478 13 N -0.342 5.342 14 C 0.014 3.986 15 H 0.052 0.948 16 C -0.204 4.204 17 C 0.016 3.984 18 N -0.333 5.333 19 C 0.025 3.975 20 C -0.391 4.391 21 H 0.080 0.920 22 C -0.241 4.241 23 N -0.566 5.566 24 Si 0.785 3.215 25 H -0.212 1.212 26 H -0.226 1.226 27 H -0.202 1.202 28 C -0.101 4.101 29 C -0.227 4.227 30 H 0.138 0.862 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.161 0.839 34 H 0.164 0.836 35 H 0.094 0.906 36 H 0.072 0.928 37 H 0.051 0.949 38 H 0.077 0.923 39 H 0.098 0.902 40 H 0.238 0.762 41 H 0.059 0.941 42 H 0.094 0.906 43 H 0.092 0.908 44 H 0.078 0.922 45 H 0.093 0.907 46 H 0.043 0.957 47 H 0.028 0.972 48 H 0.050 0.950 49 H 0.053 0.947 50 H 0.140 0.860 51 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 2.871 -19.116 2.588 19.503 hybrid contribution -1.391 1.321 0.190 1.928 sum 1.479 -17.795 2.778 18.071 Atomic orbital electron populations 1.23308 0.76741 1.05474 1.02045 1.86032 1.23201 1.26795 1.88804 1.19219 0.92822 0.84422 0.97013 1.20626 0.91499 0.99076 1.06345 1.21051 1.00729 0.90430 0.97165 1.19725 0.93694 0.94681 1.03651 1.20182 1.00622 0.93076 0.94674 1.21228 0.97105 0.94242 0.98643 0.86309 1.21661 0.94983 1.01627 1.00099 1.21063 0.78739 0.86735 0.83375 1.90608 1.57207 1.66956 1.33031 1.45785 1.54907 1.25215 1.08329 1.21629 0.91000 0.85487 1.00475 0.94809 1.22009 0.94234 1.02384 1.01749 1.21351 0.84549 0.98268 0.94267 1.44046 1.03308 1.22703 1.63258 1.20729 0.92324 0.91188 0.93237 1.19389 0.93087 0.90894 1.35723 0.92010 1.25614 0.98767 0.98976 1.00713 1.70159 1.07830 1.24709 1.53942 0.85452 0.78098 0.80699 0.77259 1.21232 1.22650 1.20224 1.21008 0.94241 0.97494 0.97323 1.21382 1.00901 0.91858 1.08549 0.86215 0.92045 0.92042 0.83880 0.83612 0.90623 0.92845 0.94931 0.92254 0.90205 0.76194 0.94135 0.90551 0.90763 0.92161 0.90738 0.95747 0.97249 0.94976 0.94740 0.85974 0.83992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 9.81 113.37 1.11 1.34 16 2 O -0.33 -6.61 10.50 -92.48 -0.97 -7.58 16 3 C 0.11 2.38 6.69 22.51 0.15 2.53 16 4 C -0.16 -3.21 9.99 22.37 0.22 -2.99 16 5 C -0.08 -1.58 9.69 22.25 0.22 -1.36 16 6 C -0.12 -2.84 4.71 -19.85 -0.09 -2.93 16 7 C -0.05 -1.36 4.19 29.85 0.12 -1.24 16 8 C -0.09 -2.66 2.71 -11.54 -0.03 -2.69 16 9 H 0.12 2.76 8.14 -2.39 -0.02 2.74 16 10 C -0.13 -3.92 8.67 71.98 0.62 -3.29 16 11 C 0.51 19.28 7.12 87.66 0.62 19.91 16 12 O -0.60 -27.18 15.58 -3.04 -0.05 -27.23 16 13 N -0.69 -24.52 4.31 -442.53 -1.91 -26.43 16 14 C 0.12 4.50 2.88 44.99 0.13 4.63 16 15 H 0.03 1.59 7.58 -2.38 -0.02 1.57 16 16 C -0.14 -4.11 9.48 71.98 0.68 -3.43 16 17 C 0.14 5.26 5.33 86.38 0.46 5.72 16 18 N -0.61 -28.61 2.78 -726.95 -2.02 -30.63 16 19 C 0.17 7.58 7.59 127.77 0.97 8.55 16 20 C -0.26 -14.05 9.66 84.03 0.81 -13.24 16 21 H 0.06 3.32 7.85 -2.91 -0.02 3.30 16 22 C -0.04 -2.48 5.14 84.86 0.44 -2.04 16 23 N -0.92 -52.43 10.64 21.65 0.23 -52.20 16 24 Si 0.95 45.80 29.57 68.60 2.03 47.83 16 25 H -0.29 -13.39 7.11 99.48 0.71 -12.68 16 26 H -0.30 -14.64 7.11 99.48 0.71 -13.93 16 27 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 28 C -0.08 -1.98 7.97 22.26 0.18 -1.80 16 29 C -0.21 -4.43 9.04 22.37 0.20 -4.23 16 30 H 0.12 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.06 0.66 7.66 -2.39 -0.02 0.65 16 32 H 0.06 0.68 7.66 -2.39 -0.02 0.66 16 33 H 0.14 2.40 8.06 -2.91 -0.02 2.38 16 34 H 0.15 2.44 8.06 -2.91 -0.02 2.42 16 35 H 0.08 2.16 7.90 -2.38 -0.02 2.14 16 36 H 0.05 1.77 8.08 -2.39 -0.02 1.75 16 37 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 38 H 0.06 1.90 6.28 -2.39 -0.01 1.88 16 39 H 0.08 2.12 6.28 -2.39 -0.01 2.11 16 40 H 0.40 12.75 6.61 -92.71 -0.61 12.14 16 41 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 42 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 43 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 44 H 0.06 2.19 8.03 -2.39 -0.02 2.17 16 45 H 0.07 2.27 7.86 -2.38 -0.02 2.25 16 46 H 0.02 1.15 5.61 -2.39 -0.01 1.14 16 47 H 0.01 0.45 7.33 -2.39 -0.02 0.43 16 48 H 0.03 1.16 7.84 -2.39 -0.02 1.14 16 49 H 0.24 13.74 8.31 -92.71 -0.77 12.97 16 50 H 0.12 2.98 8.05 -2.91 -0.02 2.95 16 51 H 0.14 2.42 6.30 -2.91 -0.02 2.41 16 Total: -1.00 -70.00 405.56 4.43 -65.56 By element: Atomic # 1 Polarization: 26.95 SS G_CDS: 0.30 Total: 27.25 kcal Atomic # 6 Polarization: -3.39 SS G_CDS: 6.82 Total: 3.43 kcal Atomic # 7 Polarization: -105.56 SS G_CDS: -3.70 Total: -109.26 kcal Atomic # 8 Polarization: -33.80 SS G_CDS: -1.02 Total: -34.81 kcal Atomic # 14 Polarization: 45.80 SS G_CDS: 2.03 Total: 47.83 kcal Total: -70.00 4.43 -65.56 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733068506.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.070 kcal (2) G-P(sol) polarization free energy of solvation -69.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.565 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds