Wall clock time and date at job start Tue Mar 31 2020 20:25:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35901 * 116.99853 * 2 1 4 4 C 1.38728 * 120.05712 * 180.02562 * 3 2 1 5 5 C 1.38139 * 119.94880 * 179.97438 * 4 3 2 6 6 C 1.38273 * 120.05328 * 359.97438 * 5 4 3 7 7 C 1.50697 * 119.94256 * 179.97438 * 6 5 4 8 8 C 1.52998 * 109.47165 * 89.99871 * 7 6 5 9 9 H 1.08997 * 109.47087 * 304.99997 * 8 7 6 10 10 C 1.53006 * 109.46926 * 64.99996 * 8 7 6 11 11 C 1.50699 * 109.47332 * 184.99552 * 8 7 6 12 12 O 1.21284 * 119.99910 * 0.02562 * 11 8 7 13 13 N 1.34779 * 119.99910 * 179.97438 * 11 8 7 14 14 C 1.46508 * 119.99514 * 180.02562 * 13 11 8 15 15 H 1.08994 * 109.47503 * 35.00378 * 14 13 11 16 16 C 1.52998 * 109.46858 * 274.99719 * 14 13 11 17 17 C 1.52999 * 109.46747 * 155.00407 * 14 13 11 18 18 N 1.46503 * 109.47050 * 304.99645 * 17 14 13 19 19 C 1.46500 * 119.99750 * 269.99959 * 18 17 14 20 20 C 1.36932 * 120.00210 * 90.00287 * 18 17 14 21 21 H 1.08006 * 119.99877 * 22.02850 * 20 18 17 22 22 C 1.38806 * 120.00471 * 202.02995 * 20 18 17 23 23 N 1.31628 * 119.99760 * 11.42692 * 22 20 18 24 24 Si 1.86802 * 120.00579 * 191.43055 * 22 20 18 25 25 H 1.48500 * 109.46879 * 89.99642 * 24 22 20 26 26 H 1.48486 * 109.47282 * 209.99766 * 24 22 20 27 27 H 1.48498 * 109.46675 * 330.00055 * 24 22 20 28 28 C 1.38259 * 120.10928 * 0.27176 * 6 5 4 29 29 C 1.38145 * 120.05949 * 359.45549 * 28 6 5 30 30 H 1.08993 * 109.47531 * 60.00413 * 1 2 3 31 31 H 1.08996 * 109.47134 * 180.02562 * 1 2 3 32 32 H 1.09008 * 109.47011 * 300.00457 * 1 2 3 33 33 H 1.08008 * 120.02488 * 359.94408 * 4 3 2 34 34 H 1.08000 * 119.97937 * 179.97438 * 5 4 3 35 35 H 1.09003 * 109.47411 * 329.99871 * 7 6 5 36 36 H 1.09000 * 109.46955 * 210.00200 * 7 6 5 37 37 H 1.08997 * 109.47236 * 60.00093 * 10 8 7 38 38 H 1.09000 * 109.46924 * 180.02562 * 10 8 7 39 39 H 1.09002 * 109.47132 * 299.99766 * 10 8 7 40 40 H 0.96993 * 120.00343 * 0.02562 * 13 11 8 41 41 H 1.08994 * 109.47601 * 300.00599 * 16 14 13 42 42 H 1.09002 * 109.47006 * 60.00429 * 16 14 13 43 43 H 1.09002 * 109.46940 * 180.02562 * 16 14 13 44 44 H 1.09001 * 109.47531 * 64.99414 * 17 14 13 45 45 H 1.09004 * 109.46986 * 185.00045 * 17 14 13 46 46 H 1.09001 * 109.46920 * 94.04728 * 19 18 17 47 47 H 1.09001 * 109.47308 * 214.03720 * 19 18 17 48 48 H 1.08993 * 109.47601 * 334.04499 * 19 18 17 49 49 H 0.96992 * 119.99919 * 180.02562 * 23 22 20 50 50 H 1.08006 * 119.97126 * 179.70170 * 28 6 5 51 51 H 1.08000 * 120.03101 * 180.27310 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 3.4312 1.2849 -0.0005 5 6 4.0560 2.5170 -0.0011 6 6 3.3018 3.6759 -0.0016 7 6 3.9859 5.0186 -0.0016 8 6 4.2181 5.4727 -1.4441 9 1 4.7710 4.7032 -1.9827 10 6 2.8697 5.7054 -2.1287 11 6 5.0102 6.7547 -1.4459 12 8 5.3555 7.2556 -0.3967 13 7 5.3358 7.3441 -2.6134 14 6 6.1063 8.5901 -2.6151 15 1 6.8193 8.5775 -1.7908 16 6 5.1559 9.7776 -2.4493 17 6 6.8604 8.7216 -3.9398 18 7 7.6809 7.5271 -4.1552 19 6 9.0581 7.4849 -3.6574 20 6 7.1605 6.4501 -4.8220 21 1 6.3183 6.5811 -5.4853 22 6 7.7154 5.1901 -4.6453 23 7 8.5853 4.9837 -3.6792 24 14 7.2277 3.7874 -5.7784 25 1 8.1433 3.7541 -6.9471 26 1 7.3186 2.5014 -5.0417 27 1 5.8337 3.9919 -6.2474 28 6 1.9210 3.6048 0.0041 29 6 1.2914 2.3752 -0.0011 30 1 -0.3634 0.5137 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 4.0208 0.3800 0.0000 34 1 5.1344 2.5752 -0.0011 35 1 4.9437 4.9384 0.5126 36 1 3.3577 5.7464 0.5119 37 1 2.3167 6.4750 -1.5901 38 1 3.0351 6.0285 -3.1565 39 1 2.2967 4.7782 -2.1275 40 1 5.0599 6.9433 -3.4525 41 1 4.4429 9.7902 -3.2736 42 1 4.6186 9.6840 -1.5056 43 1 5.7292 10.7047 -2.4510 44 1 6.1456 8.8234 -4.7563 45 1 7.5022 9.6020 -3.9067 46 1 9.0742 7.0185 -2.6724 47 1 9.6750 6.9051 -4.3440 48 1 9.4497 8.4995 -3.5855 49 1 8.9733 4.1033 -3.5560 50 1 1.3341 4.5114 0.0085 51 1 0.2128 2.3202 -0.0011 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733068508.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:25:25 Heat of formation + Delta-G solvation = -41.420375 kcal Electronic energy + Delta-G solvation = -29734.626998 eV Core-core repulsion = 25827.636148 eV Total energy + Delta-G solvation = -3906.990851 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -40.27568 -39.33126 -37.81632 -36.33313 -34.30964 -33.89358 -31.41508 -31.10114 -30.49479 -29.49036 -27.69029 -26.16536 -26.12644 -25.59728 -23.49593 -22.62304 -21.76182 -20.94298 -19.85730 -19.21442 -18.21790 -16.93764 -16.43910 -16.29790 -15.88198 -15.56754 -15.12458 -14.87481 -14.81577 -14.18476 -14.02727 -13.77831 -13.70958 -13.46321 -13.25318 -12.96889 -12.85267 -12.72767 -12.31359 -12.19321 -12.06691 -11.94042 -11.78761 -11.40156 -11.33325 -11.29079 -11.13771 -10.90181 -10.86542 -10.72925 -10.66536 -10.60514 -10.37041 -10.22111 -10.04370 -9.82946 -9.06136 -8.94023 -8.57559 -8.17329 -8.06829 -6.78446 -5.74387 -3.20487 1.34048 1.40915 3.15002 3.33353 3.39962 3.41553 3.42882 3.70900 4.03140 4.45463 4.69167 4.82017 4.91023 4.92179 4.98491 5.18297 5.21641 5.22688 5.35070 5.38966 5.40740 5.43994 5.52046 5.67003 5.67850 5.79577 5.85679 5.95371 5.99529 5.99811 6.02995 6.15929 6.19209 6.26309 6.28401 6.35242 6.37929 6.44767 6.48467 6.56362 6.75358 6.76498 6.77888 6.92529 7.30980 7.37611 7.39983 7.69962 7.79951 8.35531 8.40744 9.05127 9.20185 9.84109 10.34220 11.29706 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.011628 B = 0.003462 C = 0.002913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2407.377162 B = 8085.129850 C = 9610.683490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.321 6.321 3 C 0.115 3.885 4 C -0.148 4.148 5 C -0.074 4.074 6 C -0.107 4.107 7 C -0.055 4.055 8 C -0.105 4.105 9 H 0.100 0.900 10 C -0.142 4.142 11 C 0.523 3.477 12 O -0.565 6.565 13 N -0.686 5.686 14 C 0.118 3.882 15 H 0.075 0.925 16 C -0.158 4.158 17 C 0.142 3.858 18 N -0.598 5.598 19 C 0.165 3.835 20 C -0.256 4.256 21 H 0.066 0.934 22 C 0.008 3.992 23 N -0.899 5.899 24 Si 0.895 3.105 25 H -0.288 1.288 26 H -0.291 1.291 27 H -0.279 1.279 28 C -0.077 4.077 29 C -0.208 4.208 30 H 0.054 0.946 31 H 0.097 0.903 32 H 0.053 0.947 33 H 0.128 0.872 34 H 0.132 0.868 35 H 0.080 0.920 36 H 0.074 0.926 37 H 0.055 0.945 38 H 0.060 0.940 39 H 0.064 0.936 40 H 0.403 0.597 41 H 0.050 0.950 42 H 0.051 0.949 43 H 0.057 0.943 44 H 0.047 0.953 45 H 0.051 0.949 46 H 0.027 0.973 47 H 0.045 0.955 48 H -0.005 1.005 49 H 0.252 0.748 50 H 0.124 0.876 51 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.296 -2.626 5.697 16.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.234 6.234 3 C 0.071 3.929 4 C -0.167 4.167 5 C -0.092 4.092 6 C -0.107 4.107 7 C -0.093 4.093 8 C -0.127 4.127 9 H 0.118 0.882 10 C -0.200 4.200 11 C 0.309 3.691 12 O -0.445 6.445 13 N -0.335 5.335 14 C 0.010 3.990 15 H 0.093 0.907 16 C -0.218 4.218 17 C 0.014 3.986 18 N -0.321 5.321 19 C 0.020 3.980 20 C -0.386 4.386 21 H 0.084 0.916 22 C -0.191 4.191 23 N -0.543 5.543 24 Si 0.725 3.275 25 H -0.216 1.216 26 H -0.217 1.217 27 H -0.205 1.205 28 C -0.095 4.095 29 C -0.227 4.227 30 H 0.073 0.927 31 H 0.115 0.885 32 H 0.072 0.928 33 H 0.146 0.854 34 H 0.150 0.850 35 H 0.099 0.901 36 H 0.092 0.908 37 H 0.074 0.926 38 H 0.079 0.921 39 H 0.083 0.917 40 H 0.239 0.761 41 H 0.069 0.931 42 H 0.070 0.930 43 H 0.076 0.924 44 H 0.066 0.934 45 H 0.069 0.931 46 H 0.046 0.954 47 H 0.063 0.937 48 H 0.013 0.987 49 H 0.062 0.938 50 H 0.142 0.858 51 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -14.836 -2.612 6.446 16.386 hybrid contribution -0.537 -1.073 -1.001 1.563 sum -15.374 -3.685 5.445 16.720 Atomic orbital electron populations 1.23011 0.78715 1.03664 1.01263 1.86058 1.21134 1.27224 1.89016 1.19019 0.92377 0.83999 0.97544 1.20428 0.91285 0.98715 1.06252 1.20999 1.00327 0.90923 0.96920 1.19883 0.93451 0.95443 1.01968 1.20320 1.01165 0.92278 0.95513 1.21227 0.97084 0.96699 0.97660 0.88168 1.21818 0.95719 1.02053 1.00411 1.20303 0.79584 0.85240 0.83963 1.90608 1.56151 1.65955 1.31802 1.45711 1.54257 1.25192 1.08366 1.21782 0.92746 0.82531 1.01958 0.90684 1.22150 0.99961 0.98386 1.01268 1.21182 0.93582 0.90600 0.93275 1.43886 1.09237 1.13425 1.65520 1.20790 0.84315 0.93903 0.99005 1.19074 1.15148 0.85937 1.18404 0.91634 1.24970 0.99751 0.97050 0.97318 1.70077 1.32212 1.21624 1.30430 0.86411 0.78231 0.82400 0.80432 1.21554 1.21710 1.20483 1.20850 0.94018 0.96847 0.97749 1.21168 0.99697 0.92395 1.09449 0.92729 0.88481 0.92804 0.85355 0.85007 0.90115 0.90761 0.92568 0.92096 0.91662 0.76125 0.93125 0.93013 0.92418 0.93450 0.93102 0.95447 0.93652 0.98654 0.93764 0.85812 0.85784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 9.81 101.05 0.99 1.21 16 2 O -0.32 -3.77 10.50 -19.43 -0.20 -3.97 16 3 C 0.12 1.46 6.69 -39.22 -0.26 1.20 16 4 C -0.15 -1.95 9.99 -39.44 -0.39 -2.35 16 5 C -0.07 -1.01 9.69 -39.60 -0.38 -1.39 16 6 C -0.11 -1.44 4.71 -104.60 -0.49 -1.93 16 7 C -0.06 -0.82 4.19 -27.89 -0.12 -0.93 16 8 C -0.11 -1.69 2.71 -91.77 -0.25 -1.94 16 9 H 0.10 1.77 8.14 -51.93 -0.42 1.35 16 10 C -0.14 -1.87 8.67 37.16 0.32 -1.54 16 11 C 0.52 10.13 7.12 -10.98 -0.08 10.06 16 12 O -0.57 -12.55 15.58 5.55 0.09 -12.46 16 13 N -0.69 -13.06 4.38 -53.80 -0.24 -13.30 16 14 C 0.12 2.21 2.88 -67.93 -0.20 2.01 16 15 H 0.07 1.64 7.58 -51.93 -0.39 1.24 16 16 C -0.16 -2.41 9.48 37.16 0.35 -2.06 16 17 C 0.14 2.73 5.36 -4.04 -0.02 2.71 16 18 N -0.60 -14.17 2.82 -181.12 -0.51 -14.68 16 19 C 0.16 4.01 9.01 59.85 0.54 4.55 16 20 C -0.26 -6.44 8.02 -15.06 -0.12 -6.56 16 21 H 0.07 1.60 7.84 -52.48 -0.41 1.18 16 22 C 0.01 0.22 5.13 -17.43 -0.09 0.13 16 23 N -0.90 -25.18 10.57 55.49 0.59 -24.60 16 24 Si 0.90 20.88 29.57 -169.99 -5.03 15.85 16 25 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 26 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 27 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 28 C -0.08 -0.91 7.97 -39.61 -0.32 -1.22 16 29 C -0.21 -2.36 9.04 -39.43 -0.36 -2.72 16 30 H 0.05 0.37 7.66 -51.93 -0.40 -0.03 16 31 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.05 0.35 7.66 -51.92 -0.40 -0.05 16 33 H 0.13 1.54 8.06 -52.48 -0.42 1.12 16 34 H 0.13 1.76 8.06 -52.49 -0.42 1.34 16 35 H 0.08 1.32 7.90 -51.93 -0.41 0.91 16 36 H 0.07 1.06 8.08 -51.93 -0.42 0.64 16 37 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.06 0.79 7.57 -51.93 -0.39 0.39 16 39 H 0.06 0.79 6.28 -51.93 -0.33 0.46 16 40 H 0.40 7.60 6.82 -40.82 -0.28 7.32 16 41 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 43 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 44 H 0.05 0.86 8.03 -51.93 -0.42 0.44 16 45 H 0.05 0.90 7.86 -51.93 -0.41 0.49 16 46 H 0.03 0.74 7.44 -51.93 -0.39 0.35 16 47 H 0.04 1.18 7.15 -51.93 -0.37 0.81 16 48 H -0.01 -0.11 7.85 -51.93 -0.41 -0.52 16 49 H 0.25 6.96 8.31 -40.82 -0.34 6.63 16 50 H 0.12 1.25 8.05 -52.48 -0.42 0.83 16 51 H 0.12 1.10 6.30 -52.49 -0.33 0.77 16 LS Contribution 408.56 15.07 6.16 6.16 Total: -1.00 -30.88 408.56 -8.71 -39.59 By element: Atomic # 1 Polarization: 16.90 SS G_CDS: -8.69 Total: 8.21 kcal Atomic # 6 Polarization: 0.07 SS G_CDS: -0.87 Total: -0.80 kcal Atomic # 7 Polarization: -52.41 SS G_CDS: -0.16 Total: -52.57 kcal Atomic # 8 Polarization: -16.32 SS G_CDS: -0.12 Total: -16.44 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.03 Total: 15.85 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -30.88 -8.71 -39.59 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733068508.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.831 kcal (2) G-P(sol) polarization free energy of solvation -30.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.589 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds