Wall clock time and date at job start Tue Mar 31 2020 20:25:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35901 * 116.99853 * 2 1 4 4 C 1.38728 * 120.05712 * 180.02562 * 3 2 1 5 5 C 1.38139 * 119.94880 * 179.97438 * 4 3 2 6 6 C 1.38273 * 120.05328 * 359.97438 * 5 4 3 7 7 C 1.50697 * 119.94256 * 179.97438 * 6 5 4 8 8 C 1.52998 * 109.47165 * 89.99871 * 7 6 5 9 9 H 1.08997 * 109.47087 * 304.99997 * 8 7 6 10 10 C 1.53006 * 109.46926 * 64.99996 * 8 7 6 11 11 C 1.50699 * 109.47332 * 184.99552 * 8 7 6 12 12 O 1.21284 * 119.99910 * 0.02562 * 11 8 7 13 13 N 1.34779 * 119.99910 * 179.97438 * 11 8 7 14 14 C 1.46508 * 119.99514 * 180.02562 * 13 11 8 15 15 H 1.08994 * 109.47503 * 35.00378 * 14 13 11 16 16 C 1.52998 * 109.46858 * 274.99719 * 14 13 11 17 17 C 1.52999 * 109.46747 * 155.00407 * 14 13 11 18 18 N 1.46503 * 109.47050 * 304.99645 * 17 14 13 19 19 C 1.46500 * 119.99750 * 269.99959 * 18 17 14 20 20 C 1.36932 * 120.00210 * 90.00287 * 18 17 14 21 21 H 1.08006 * 119.99877 * 22.02850 * 20 18 17 22 22 C 1.38806 * 120.00471 * 202.02995 * 20 18 17 23 23 N 1.31628 * 119.99760 * 11.42692 * 22 20 18 24 24 Si 1.86802 * 120.00579 * 191.43055 * 22 20 18 25 25 H 1.48500 * 109.46879 * 89.99642 * 24 22 20 26 26 H 1.48486 * 109.47282 * 209.99766 * 24 22 20 27 27 H 1.48498 * 109.46675 * 330.00055 * 24 22 20 28 28 C 1.38259 * 120.10928 * 0.27176 * 6 5 4 29 29 C 1.38145 * 120.05949 * 359.45549 * 28 6 5 30 30 H 1.08993 * 109.47531 * 60.00413 * 1 2 3 31 31 H 1.08996 * 109.47134 * 180.02562 * 1 2 3 32 32 H 1.09008 * 109.47011 * 300.00457 * 1 2 3 33 33 H 1.08008 * 120.02488 * 359.94408 * 4 3 2 34 34 H 1.08000 * 119.97937 * 179.97438 * 5 4 3 35 35 H 1.09003 * 109.47411 * 329.99871 * 7 6 5 36 36 H 1.09000 * 109.46955 * 210.00200 * 7 6 5 37 37 H 1.08997 * 109.47236 * 60.00093 * 10 8 7 38 38 H 1.09000 * 109.46924 * 180.02562 * 10 8 7 39 39 H 1.09002 * 109.47132 * 299.99766 * 10 8 7 40 40 H 0.96993 * 120.00343 * 0.02562 * 13 11 8 41 41 H 1.08994 * 109.47601 * 300.00599 * 16 14 13 42 42 H 1.09002 * 109.47006 * 60.00429 * 16 14 13 43 43 H 1.09002 * 109.46940 * 180.02562 * 16 14 13 44 44 H 1.09001 * 109.47531 * 64.99414 * 17 14 13 45 45 H 1.09004 * 109.46986 * 185.00045 * 17 14 13 46 46 H 1.09001 * 109.46920 * 94.04728 * 19 18 17 47 47 H 1.09001 * 109.47308 * 214.03720 * 19 18 17 48 48 H 1.08993 * 109.47601 * 334.04499 * 19 18 17 49 49 H 0.96992 * 119.99919 * 180.02562 * 23 22 20 50 50 H 1.08006 * 119.97126 * 179.70170 * 28 6 5 51 51 H 1.08000 * 120.03101 * 180.27310 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 3.4312 1.2849 -0.0005 5 6 4.0560 2.5170 -0.0011 6 6 3.3018 3.6759 -0.0016 7 6 3.9859 5.0186 -0.0016 8 6 4.2181 5.4727 -1.4441 9 1 4.7710 4.7032 -1.9827 10 6 2.8697 5.7054 -2.1287 11 6 5.0102 6.7547 -1.4459 12 8 5.3555 7.2556 -0.3967 13 7 5.3358 7.3441 -2.6134 14 6 6.1063 8.5901 -2.6151 15 1 6.8193 8.5775 -1.7908 16 6 5.1559 9.7776 -2.4493 17 6 6.8604 8.7216 -3.9398 18 7 7.6809 7.5271 -4.1552 19 6 9.0581 7.4849 -3.6574 20 6 7.1605 6.4501 -4.8220 21 1 6.3183 6.5811 -5.4853 22 6 7.7154 5.1901 -4.6453 23 7 8.5853 4.9837 -3.6792 24 14 7.2277 3.7874 -5.7784 25 1 8.1433 3.7541 -6.9471 26 1 7.3186 2.5014 -5.0417 27 1 5.8337 3.9919 -6.2474 28 6 1.9210 3.6048 0.0041 29 6 1.2914 2.3752 -0.0011 30 1 -0.3634 0.5137 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 4.0208 0.3800 0.0000 34 1 5.1344 2.5752 -0.0011 35 1 4.9437 4.9384 0.5126 36 1 3.3577 5.7464 0.5119 37 1 2.3167 6.4750 -1.5901 38 1 3.0351 6.0285 -3.1565 39 1 2.2967 4.7782 -2.1275 40 1 5.0599 6.9433 -3.4525 41 1 4.4429 9.7902 -3.2736 42 1 4.6186 9.6840 -1.5056 43 1 5.7292 10.7047 -2.4510 44 1 6.1456 8.8234 -4.7563 45 1 7.5022 9.6020 -3.9067 46 1 9.0742 7.0185 -2.6724 47 1 9.6750 6.9051 -4.3440 48 1 9.4497 8.4995 -3.5855 49 1 8.9733 4.1033 -3.5560 50 1 1.3341 4.5114 0.0085 51 1 0.2128 2.3202 -0.0011 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733068508.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:25:24 Heat of formation + Delta-G solvation = -58.710207 kcal Electronic energy + Delta-G solvation = -29735.376742 eV Core-core repulsion = 25827.636148 eV Total energy + Delta-G solvation = -3907.740594 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -41.28033 -40.72111 -38.83581 -37.99147 -35.72707 -35.46169 -33.15138 -32.06941 -31.88865 -30.74072 -28.43473 -28.02849 -27.34864 -27.14602 -24.79262 -23.57197 -23.42087 -22.17832 -21.34609 -20.66759 -19.07554 -18.73653 -17.99557 -17.20650 -17.10539 -16.74201 -16.61188 -16.28541 -16.07083 -15.60288 -15.24573 -15.19816 -15.03063 -14.65564 -14.49222 -14.39517 -14.31121 -13.90311 -13.77771 -13.33696 -13.21778 -13.07789 -13.03271 -12.85026 -12.78806 -12.70584 -12.51745 -12.33237 -12.26722 -12.13624 -11.98843 -11.93395 -11.91586 -11.70397 -11.65771 -11.63860 -10.59966 -10.54464 -9.94997 -9.73954 -9.03813 -8.75022 -7.75939 -5.22914 0.37698 0.42278 1.47166 1.49902 1.56598 1.87511 2.38796 2.49785 2.54761 2.80452 3.39859 3.70159 3.79949 3.82118 3.95137 3.99197 4.06434 4.16487 4.26633 4.29757 4.41366 4.43252 4.45809 4.49720 4.56676 4.60471 4.67514 4.74691 4.77894 4.81969 4.86178 4.89111 4.94476 4.96861 5.03461 5.10652 5.19751 5.22926 5.29392 5.31035 5.34899 5.39029 5.43803 5.67461 5.72796 5.75116 5.81114 5.86614 6.36556 6.46367 6.85925 7.19232 7.51769 7.91668 8.37932 9.27743 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.011628 B = 0.003462 C = 0.002913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2407.377162 B = 8085.129850 C = 9610.683490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.338 6.338 3 C 0.111 3.889 4 C -0.164 4.164 5 C -0.090 4.090 6 C -0.119 4.119 7 C -0.045 4.045 8 C -0.099 4.099 9 H 0.079 0.921 10 C -0.134 4.134 11 C 0.515 3.485 12 O -0.599 6.599 13 N -0.686 5.686 14 C 0.120 3.880 15 H 0.036 0.964 16 C -0.145 4.145 17 C 0.141 3.859 18 N -0.612 5.612 19 C 0.180 3.820 20 C -0.245 4.245 21 H 0.081 0.919 22 C -0.044 4.044 23 N -0.935 5.935 24 Si 0.950 3.050 25 H -0.293 1.293 26 H -0.306 1.306 27 H -0.258 1.258 28 C -0.071 4.071 29 C -0.202 4.202 30 H 0.065 0.935 31 H 0.117 0.883 32 H 0.066 0.934 33 H 0.130 0.870 34 H 0.119 0.881 35 H 0.052 0.948 36 H 0.081 0.919 37 H 0.070 0.930 38 H 0.063 0.937 39 H 0.079 0.921 40 H 0.405 0.595 41 H 0.071 0.929 42 H 0.040 0.960 43 H 0.078 0.922 44 H 0.068 0.932 45 H 0.071 0.929 46 H -0.009 1.009 47 H 0.019 0.981 48 H 0.026 0.974 49 H 0.242 0.758 50 H 0.148 0.852 51 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.796 -1.787 4.472 19.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.253 6.253 3 C 0.066 3.934 4 C -0.183 4.183 5 C -0.108 4.108 6 C -0.119 4.119 7 C -0.083 4.083 8 C -0.120 4.120 9 H 0.097 0.903 10 C -0.191 4.191 11 C 0.302 3.698 12 O -0.482 6.482 13 N -0.335 5.335 14 C 0.012 3.988 15 H 0.054 0.946 16 C -0.203 4.203 17 C 0.015 3.985 18 N -0.334 5.334 19 C 0.034 3.966 20 C -0.375 4.375 21 H 0.098 0.902 22 C -0.239 4.239 23 N -0.582 5.582 24 Si 0.780 3.220 25 H -0.221 1.221 26 H -0.233 1.233 27 H -0.182 1.182 28 C -0.089 4.089 29 C -0.221 4.221 30 H 0.083 0.917 31 H 0.135 0.865 32 H 0.085 0.915 33 H 0.148 0.852 34 H 0.137 0.863 35 H 0.070 0.930 36 H 0.100 0.900 37 H 0.089 0.911 38 H 0.082 0.918 39 H 0.098 0.902 40 H 0.241 0.759 41 H 0.090 0.910 42 H 0.059 0.941 43 H 0.097 0.903 44 H 0.087 0.913 45 H 0.090 0.910 46 H 0.009 0.991 47 H 0.038 0.962 48 H 0.044 0.956 49 H 0.051 0.949 50 H 0.166 0.834 51 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -18.378 -1.742 5.188 19.176 hybrid contribution 0.534 -1.304 -0.604 1.533 sum -17.844 -3.046 4.584 18.674 Atomic orbital electron populations 1.23345 0.76407 1.05509 1.02371 1.86043 1.23561 1.26860 1.88786 1.19157 0.92255 0.85002 0.96975 1.20517 0.92273 0.98479 1.07032 1.20991 1.00021 0.91721 0.98050 1.19770 0.94398 0.94193 1.03520 1.20170 1.00104 0.93505 0.94512 1.21194 0.98157 0.94077 0.98607 0.90323 1.21784 0.93779 1.03270 1.00278 1.20906 0.79406 0.85978 0.83479 1.90583 1.57544 1.67149 1.32929 1.45777 1.53888 1.25431 1.08355 1.21683 0.93037 0.83977 1.00083 0.94560 1.22008 0.99547 0.97291 1.01495 1.21385 0.93843 0.89383 0.93931 1.44123 1.09529 1.14420 1.65365 1.20484 0.85025 0.94749 0.96328 1.19433 1.14389 0.86092 1.17579 0.90152 1.25602 1.00416 0.99301 0.98625 1.70266 1.34160 1.21300 1.32519 0.85517 0.78812 0.79346 0.78370 1.22078 1.23330 1.18247 1.21078 0.93135 0.98151 0.96550 1.21474 1.01179 0.91454 1.07975 0.91665 0.86502 0.91496 0.85190 0.86251 0.92952 0.90014 0.91124 0.91757 0.90241 0.75908 0.90963 0.94128 0.90318 0.91332 0.91050 0.99104 0.96168 0.95572 0.94904 0.83441 0.82717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 9.81 113.37 1.11 1.33 16 2 O -0.34 -7.38 10.50 -92.44 -0.97 -8.35 16 3 C 0.11 2.66 6.69 22.51 0.15 2.81 16 4 C -0.16 -4.40 9.99 22.36 0.22 -4.18 16 5 C -0.09 -2.57 9.69 22.25 0.22 -2.35 16 6 C -0.12 -3.18 4.71 -19.85 -0.09 -3.27 16 7 C -0.05 -1.37 4.19 29.85 0.12 -1.24 16 8 C -0.10 -3.20 2.71 -11.54 -0.03 -3.24 16 9 H 0.08 2.89 8.14 -2.39 -0.02 2.87 16 10 C -0.13 -3.23 8.67 71.98 0.62 -2.60 16 11 C 0.51 20.27 7.12 87.66 0.62 20.89 16 12 O -0.60 -27.50 15.58 -3.04 -0.05 -27.54 16 13 N -0.69 -25.81 4.38 -442.52 -1.94 -27.75 16 14 C 0.12 4.38 2.88 44.99 0.13 4.51 16 15 H 0.04 1.61 7.58 -2.39 -0.02 1.59 16 16 C -0.14 -4.04 9.48 71.98 0.68 -3.35 16 17 C 0.14 5.12 5.36 86.38 0.46 5.59 16 18 N -0.61 -28.60 2.82 -726.94 -2.05 -30.65 16 19 C 0.18 8.89 9.01 127.77 1.15 10.04 16 20 C -0.24 -12.12 8.02 84.03 0.67 -11.44 16 21 H 0.08 3.71 7.84 -2.91 -0.02 3.69 16 22 C -0.04 -2.34 5.13 84.86 0.44 -1.91 16 23 N -0.94 -54.44 10.57 21.65 0.23 -54.22 16 24 Si 0.95 43.22 29.57 68.60 2.03 45.25 16 25 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 26 H -0.31 -14.58 7.11 99.48 0.71 -13.87 16 27 H -0.26 -10.75 7.11 99.48 0.71 -10.04 16 28 C -0.07 -1.53 7.97 22.25 0.18 -1.35 16 29 C -0.20 -4.03 9.04 22.37 0.20 -3.83 16 30 H 0.06 0.66 7.66 -2.39 -0.02 0.64 16 31 H 0.12 0.92 8.14 -2.39 -0.02 0.90 16 32 H 0.07 0.64 7.66 -2.38 -0.02 0.62 16 33 H 0.13 3.27 8.06 -2.91 -0.02 3.25 16 34 H 0.12 3.56 8.06 -2.91 -0.02 3.54 16 35 H 0.05 1.85 7.90 -2.39 -0.02 1.83 16 36 H 0.08 2.31 8.08 -2.39 -0.02 2.30 16 37 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 38 H 0.06 1.51 7.57 -2.39 -0.02 1.49 16 39 H 0.08 1.71 6.28 -2.39 -0.01 1.69 16 40 H 0.40 14.79 6.82 -92.71 -0.63 14.15 16 41 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 42 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16 43 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 44 H 0.07 2.24 8.03 -2.39 -0.02 2.22 16 45 H 0.07 2.31 7.86 -2.38 -0.02 2.30 16 46 H -0.01 -0.53 7.44 -2.39 -0.02 -0.55 16 47 H 0.02 1.06 7.15 -2.39 -0.02 1.05 16 48 H 0.03 1.10 7.85 -2.39 -0.02 1.08 16 49 H 0.24 14.03 8.31 -92.71 -0.77 13.26 16 50 H 0.15 2.43 8.05 -2.91 -0.02 2.41 16 51 H 0.16 2.08 6.30 -2.91 -0.02 2.06 16 Total: -1.00 -69.29 408.56 4.39 -64.90 By element: Atomic # 1 Polarization: 31.69 SS G_CDS: 0.27 Total: 31.96 kcal Atomic # 6 Polarization: -0.47 SS G_CDS: 6.87 Total: 6.40 kcal Atomic # 7 Polarization: -108.85 SS G_CDS: -3.76 Total: -112.61 kcal Atomic # 8 Polarization: -34.88 SS G_CDS: -1.02 Total: -35.89 kcal Atomic # 14 Polarization: 43.22 SS G_CDS: 2.03 Total: 45.25 kcal Total: -69.29 4.39 -64.90 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733068508.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.191 kcal (2) G-P(sol) polarization free energy of solvation -69.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.901 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds