Wall clock time and date at job start Tue Mar 31 2020 19:41:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35898 * 117.00217 * 2 1 4 4 C 1.38754 * 120.05382 * 0.20769 * 3 2 1 5 5 C 1.38126 * 119.94445 * 180.27114 * 4 3 2 6 6 C 1.38292 * 120.05487 * 359.77492 * 5 4 3 7 7 C 1.38250 * 120.11018 * 359.97350 * 6 5 4 8 8 C 1.50697 * 119.97109 * 179.97438 * 7 6 5 9 9 H 1.08997 * 109.46864 * 180.02562 * 8 7 6 10 10 C 1.53005 * 109.47016 * 60.02112 * 8 7 6 11 11 C 1.50701 * 109.47099 * 300.02339 * 8 7 6 12 12 O 1.21273 * 120.00156 * 13.93844 * 11 8 7 13 13 N 1.34780 * 119.99644 * 193.94101 * 11 8 7 14 14 C 1.46504 * 120.00210 * 3.70296 * 13 11 8 15 15 C 1.46504 * 119.99861 * 183.70965 * 13 11 8 16 16 C 1.53006 * 109.47117 * 89.99761 * 15 13 11 17 17 C 1.52996 * 109.46768 * 180.02562 * 16 15 13 18 18 N 1.46500 * 109.47006 * 179.97438 * 17 16 15 19 19 C 1.46506 * 119.99664 * 89.99626 * 18 17 16 20 20 C 1.36935 * 120.00682 * 270.00231 * 18 17 16 21 21 H 1.08000 * 120.00530 * 147.25860 * 20 18 17 22 22 C 1.38815 * 119.99334 * 327.25718 * 20 18 17 23 23 N 1.31621 * 119.99448 * 154.43284 * 22 20 18 24 24 Si 1.86800 * 120.00189 * 334.42583 * 22 20 18 25 25 H 1.48507 * 109.46769 * 95.34747 * 24 22 20 26 26 H 1.48500 * 109.46942 * 215.34687 * 24 22 20 27 27 H 1.48498 * 109.47054 * 335.34866 * 24 22 20 28 28 C 1.38164 * 120.05431 * 0.02562 * 7 6 5 29 29 H 1.09001 * 109.47479 * 300.00087 * 1 2 3 30 30 H 1.09005 * 109.47165 * 59.99787 * 1 2 3 31 31 H 1.08999 * 109.47155 * 179.97438 * 1 2 3 32 32 H 1.07998 * 120.03270 * 0.02901 * 4 3 2 33 33 H 1.07998 * 119.97594 * 179.74687 * 5 4 3 34 34 H 1.08001 * 119.94495 * 179.97438 * 6 5 4 35 35 H 1.09001 * 109.46859 * 178.86018 * 10 8 7 36 36 H 1.09001 * 109.47471 * 298.86549 * 10 8 7 37 37 H 1.09002 * 109.46868 * 58.86603 * 10 8 7 38 38 H 1.08993 * 109.46603 * 85.91158 * 14 13 11 39 39 H 1.09003 * 109.46892 * 205.91185 * 14 13 11 40 40 H 1.09002 * 109.47115 * 325.91401 * 14 13 11 41 41 H 1.08994 * 109.47035 * 209.99561 * 15 13 11 42 42 H 1.08997 * 109.46784 * 330.00156 * 15 13 11 43 43 H 1.09004 * 109.47039 * 299.99694 * 16 15 13 44 44 H 1.08993 * 109.47275 * 60.00139 * 16 15 13 45 45 H 1.08996 * 109.47381 * 299.99997 * 17 16 15 46 46 H 1.09006 * 109.47352 * 60.00209 * 17 16 15 47 47 H 1.09003 * 109.46628 * 95.02306 * 19 18 17 48 48 H 1.09000 * 109.47439 * 215.02008 * 19 18 17 49 49 H 1.08998 * 109.47289 * 335.02408 * 19 18 17 50 50 H 0.97002 * 119.99604 * 179.97438 * 23 22 20 51 51 H 1.08004 * 120.02265 * 179.97438 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2914 2.3753 0.0044 5 6 1.9208 3.6048 -0.0013 6 6 3.3019 3.6758 -0.0066 7 6 4.0560 2.5170 -0.0057 8 6 5.5608 2.5981 -0.0121 9 1 5.9788 1.5915 -0.0108 10 6 6.0363 3.3496 1.2330 11 6 6.0191 3.3308 -1.2467 12 8 5.2223 3.9618 -1.9082 13 7 7.3146 3.2847 -1.6156 14 6 8.2614 2.4572 -0.8637 15 6 7.7761 4.0621 -2.7684 16 6 8.2235 5.4490 -2.3021 17 6 8.7048 6.2611 -3.5061 18 7 9.1326 7.5893 -3.0598 19 6 10.5242 7.8150 -2.6614 20 6 8.2318 8.6197 -3.0149 21 1 8.3241 9.3851 -2.2586 22 6 7.2000 8.6803 -3.9415 23 7 6.0850 9.3133 -3.6442 24 14 7.3942 7.8638 -5.6104 25 1 6.7933 6.5063 -5.5701 26 1 6.7063 8.6792 -6.6434 27 1 8.8372 7.7566 -5.9441 28 6 3.4311 1.2848 0.0000 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 0.2128 2.3204 0.0082 33 1 1.3340 4.5114 -0.0021 34 1 3.7922 4.6381 -0.0115 35 1 7.1255 3.3906 1.2387 36 1 5.6346 4.3628 1.2215 37 1 5.6876 2.8306 2.1258 38 1 8.2384 1.4378 -1.2488 39 1 9.2665 2.8645 -0.9733 40 1 7.9836 2.4538 0.1903 41 1 8.6143 3.5496 -3.2402 42 1 6.9624 4.1652 -3.4863 43 1 7.3852 5.9616 -1.8302 44 1 9.0371 5.3461 -1.5842 45 1 9.5429 5.7487 -3.9784 46 1 7.8908 6.3641 -4.2238 47 1 11.0862 8.2054 -3.5098 48 1 10.5558 8.5342 -1.8429 49 1 10.9661 6.8736 -2.3351 50 1 5.3641 9.3560 -4.2919 51 1 4.0207 0.3799 0.0003 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733781782.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:41:30 Heat of formation + Delta-G solvation = -14.691832 kcal Electronic energy + Delta-G solvation = -29397.534018 eV Core-core repulsion = 25491.702203 eV Total energy + Delta-G solvation = -3905.831814 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.53 seconds Orbital eigenvalues (eV) -40.60337 -39.71146 -37.64761 -36.37996 -35.32170 -34.07576 -31.85552 -31.06659 -30.73606 -29.13156 -27.48944 -27.05361 -26.34529 -25.60720 -24.13004 -22.62841 -22.24290 -21.00884 -20.58240 -19.05922 -17.71403 -17.18380 -16.65402 -16.24346 -15.93167 -15.91381 -15.73340 -15.46721 -15.13840 -14.61566 -14.24358 -13.80481 -13.65759 -13.51150 -13.40757 -13.29326 -13.12856 -12.78960 -12.68724 -12.54314 -12.31707 -12.24526 -11.97615 -11.90069 -11.76848 -11.48802 -11.39294 -11.26392 -11.10711 -11.02904 -10.83585 -10.77003 -10.37440 -10.35167 -9.69701 -9.51234 -9.36980 -8.87433 -8.50067 -8.38817 -8.19614 -6.81708 -5.92237 -3.26596 1.23769 1.47334 2.80416 3.02457 3.19419 3.39326 3.53002 3.57741 3.76573 4.44433 4.58006 4.60783 4.71826 4.85253 4.90026 4.96439 4.98844 5.01745 5.05517 5.08987 5.20210 5.29801 5.37436 5.41635 5.44556 5.45991 5.48564 5.54253 5.69451 5.71068 5.84068 5.95307 5.96453 6.04422 6.09588 6.20110 6.22812 6.27367 6.39555 6.47946 6.58903 6.62445 6.70083 6.71807 6.77299 6.86773 7.13270 7.28446 7.52893 8.09734 8.37647 8.41676 9.05190 9.80046 10.18327 11.23716 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.014472 B = 0.002906 C = 0.002639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1934.239870 B = 9631.765495 C =10606.746694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.321 6.321 3 C 0.117 3.883 4 C -0.207 4.207 5 C -0.083 4.083 6 C -0.110 4.110 7 C -0.033 4.033 8 C -0.069 4.069 9 H 0.099 0.901 10 C -0.143 4.143 11 C 0.515 3.485 12 O -0.517 6.517 13 N -0.615 5.615 14 C 0.071 3.929 15 C 0.114 3.886 16 C -0.145 4.145 17 C 0.141 3.859 18 N -0.612 5.612 19 C 0.127 3.873 20 C -0.271 4.271 21 H 0.079 0.921 22 C 0.036 3.964 23 N -0.895 5.895 24 Si 0.874 3.126 25 H -0.283 1.283 26 H -0.302 1.302 27 H -0.272 1.272 28 C -0.145 4.145 29 H 0.054 0.946 30 H 0.054 0.946 31 H 0.097 0.903 32 H 0.125 0.875 33 H 0.126 0.874 34 H 0.128 0.872 35 H 0.070 0.930 36 H 0.068 0.932 37 H 0.069 0.931 38 H 0.053 0.947 39 H 0.074 0.926 40 H 0.074 0.926 41 H 0.070 0.930 42 H 0.082 0.918 43 H 0.073 0.927 44 H 0.052 0.948 45 H 0.037 0.963 46 H 0.054 0.946 47 H 0.007 0.993 48 H 0.037 0.963 49 H 0.030 0.970 50 H 0.263 0.737 51 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.838 -21.081 10.956 24.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.235 6.235 3 C 0.072 3.928 4 C -0.225 4.225 5 C -0.101 4.101 6 C -0.129 4.129 7 C -0.034 4.034 8 C -0.090 4.090 9 H 0.117 0.883 10 C -0.200 4.200 11 C 0.301 3.699 12 O -0.391 6.391 13 N -0.349 5.349 14 C -0.072 4.072 15 C -0.009 4.009 16 C -0.186 4.186 17 C 0.014 3.986 18 N -0.336 5.336 19 C -0.018 4.018 20 C -0.399 4.399 21 H 0.096 0.904 22 C -0.165 4.165 23 N -0.536 5.536 24 Si 0.704 3.296 25 H -0.211 1.211 26 H -0.230 1.230 27 H -0.197 1.197 28 C -0.163 4.163 29 H 0.072 0.928 30 H 0.073 0.927 31 H 0.116 0.884 32 H 0.142 0.858 33 H 0.144 0.856 34 H 0.146 0.854 35 H 0.089 0.911 36 H 0.087 0.913 37 H 0.088 0.912 38 H 0.071 0.929 39 H 0.093 0.907 40 H 0.093 0.907 41 H 0.088 0.912 42 H 0.100 0.900 43 H 0.092 0.908 44 H 0.070 0.930 45 H 0.055 0.945 46 H 0.072 0.928 47 H 0.025 0.975 48 H 0.056 0.944 49 H 0.049 0.951 50 H 0.072 0.928 51 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -4.315 -20.835 10.540 23.744 hybrid contribution -0.209 -0.306 -1.042 1.106 sum -4.524 -21.140 9.499 23.614 Atomic orbital electron populations 1.23016 0.78620 1.03660 1.01354 1.86033 1.21195 1.27116 1.89129 1.18861 0.92122 0.84034 0.97790 1.21209 0.99781 0.92475 1.09080 1.20961 0.94667 0.96995 0.97458 1.20993 0.93476 0.98557 0.99825 1.19097 0.93468 0.92550 0.98251 1.20267 0.92808 1.01100 0.94872 0.88253 1.21870 1.01698 1.01163 0.95315 1.20375 0.81947 0.81436 0.86123 1.90777 1.52561 1.41926 1.53873 1.47860 1.08171 1.47080 1.31773 1.21946 0.93946 0.94564 0.96753 1.21602 0.99714 0.91996 0.87569 1.22463 1.01522 0.93879 1.00697 1.21084 0.97330 0.85738 0.94409 1.44050 1.05583 1.05359 1.78649 1.21029 0.85579 0.97883 0.97348 1.18752 1.05632 1.04515 1.11026 0.90375 1.25325 0.95904 0.97406 0.97865 1.69907 1.03583 1.45398 1.34737 0.86996 0.78112 0.78056 0.86389 1.21119 1.23031 1.19735 1.20169 0.91385 0.97644 1.07152 0.92751 0.92706 0.88446 0.85751 0.85632 0.85368 0.91145 0.91262 0.91166 0.92853 0.90723 0.90726 0.91180 0.89999 0.90813 0.92969 0.94490 0.92791 0.97466 0.94426 0.95146 0.92756 0.85508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 9.81 101.05 0.99 1.20 16 2 O -0.32 -3.63 10.50 -19.42 -0.20 -3.83 16 3 C 0.12 1.46 6.69 -39.22 -0.26 1.19 16 4 C -0.21 -2.45 9.04 -39.43 -0.36 -2.81 16 5 C -0.08 -1.07 10.04 -39.60 -0.40 -1.47 16 6 C -0.11 -1.60 7.85 -39.56 -0.31 -1.91 16 7 C -0.03 -0.44 4.54 -104.65 -0.47 -0.92 16 8 C -0.07 -0.82 2.07 -92.92 -0.19 -1.01 16 9 H 0.10 0.91 7.20 -51.93 -0.37 0.54 16 10 C -0.14 -1.45 8.70 37.16 0.32 -1.12 16 11 C 0.51 8.17 6.84 -10.98 -0.08 8.09 16 12 O -0.52 -10.72 14.24 5.56 0.08 -10.64 16 13 N -0.61 -8.69 2.87 -181.57 -0.52 -9.21 16 14 C 0.07 0.65 9.86 59.85 0.59 1.24 16 15 C 0.11 1.87 5.42 -4.04 -0.02 1.85 16 16 C -0.14 -2.81 5.86 -26.73 -0.16 -2.97 16 17 C 0.14 3.12 4.53 -4.04 -0.02 3.11 16 18 N -0.61 -15.14 2.56 -181.11 -0.46 -15.60 16 19 C 0.13 2.58 10.69 59.85 0.64 3.22 16 20 C -0.27 -7.88 9.96 -15.06 -0.15 -8.03 16 21 H 0.08 2.43 8.06 -52.49 -0.42 2.01 16 22 C 0.04 1.07 5.28 -17.43 -0.09 0.98 16 23 N -0.90 -28.39 13.97 55.49 0.78 -27.62 16 24 Si 0.87 23.20 25.06 -169.99 -4.26 18.94 16 25 H -0.28 -7.36 6.62 56.52 0.37 -6.99 16 26 H -0.30 -8.09 7.11 56.52 0.40 -7.69 16 27 H -0.27 -7.05 7.11 56.52 0.40 -6.65 16 28 C -0.14 -1.82 9.61 -39.43 -0.38 -2.19 16 29 H 0.05 0.34 7.65 -51.93 -0.40 -0.06 16 30 H 0.05 0.37 7.67 -51.93 -0.40 -0.02 16 31 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.12 1.16 6.30 -52.49 -0.33 0.83 16 33 H 0.13 1.41 8.06 -52.49 -0.42 0.99 16 34 H 0.13 2.03 7.18 -52.49 -0.38 1.65 16 35 H 0.07 0.62 5.86 -51.93 -0.30 0.32 16 36 H 0.07 0.82 7.43 -51.93 -0.39 0.44 16 37 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 39 H 0.07 0.63 8.04 -51.93 -0.42 0.21 16 40 H 0.07 0.56 4.55 -51.93 -0.24 0.32 16 41 H 0.07 0.95 8.07 -51.93 -0.42 0.53 16 42 H 0.08 1.58 7.37 -51.93 -0.38 1.20 16 43 H 0.07 1.74 8.14 -51.93 -0.42 1.32 16 44 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 45 H 0.04 0.72 8.07 -51.93 -0.42 0.30 16 46 H 0.05 1.35 2.88 -51.93 -0.15 1.20 16 47 H 0.01 0.15 8.14 -51.93 -0.42 -0.28 16 48 H 0.04 0.75 8.08 -51.93 -0.42 0.33 16 49 H 0.03 0.52 8.03 -51.93 -0.42 0.10 16 50 H 0.26 7.94 8.31 -40.82 -0.34 7.60 16 51 H 0.13 1.35 7.94 -52.48 -0.42 0.93 16 LS Contribution 402.41 15.07 6.06 6.06 Total: -1.00 -36.36 402.41 -7.26 -43.62 By element: Atomic # 1 Polarization: 8.21 SS G_CDS: -8.39 Total: -0.18 kcal Atomic # 6 Polarization: -1.21 SS G_CDS: -0.34 Total: -1.55 kcal Atomic # 7 Polarization: -52.22 SS G_CDS: -0.21 Total: -52.43 kcal Atomic # 8 Polarization: -14.34 SS G_CDS: -0.12 Total: -14.47 kcal Atomic # 14 Polarization: 23.20 SS G_CDS: -4.26 Total: 18.94 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -36.36 -7.26 -43.62 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733781782.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.928 kcal (2) G-P(sol) polarization free energy of solvation -36.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.620 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.53 seconds