Wall clock time and date at job start Tue Mar 31 2020 19:41:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35898 * 117.00217 * 2 1 4 4 C 1.38754 * 120.05382 * 0.20769 * 3 2 1 5 5 C 1.38126 * 119.94445 * 180.27114 * 4 3 2 6 6 C 1.38292 * 120.05487 * 359.77492 * 5 4 3 7 7 C 1.38250 * 120.11018 * 359.97350 * 6 5 4 8 8 C 1.50697 * 119.97109 * 179.97438 * 7 6 5 9 9 H 1.08997 * 109.46864 * 180.02562 * 8 7 6 10 10 C 1.53005 * 109.47016 * 60.02112 * 8 7 6 11 11 C 1.50701 * 109.47099 * 300.02339 * 8 7 6 12 12 O 1.21273 * 120.00156 * 13.93844 * 11 8 7 13 13 N 1.34780 * 119.99644 * 193.94101 * 11 8 7 14 14 C 1.46504 * 120.00210 * 3.70296 * 13 11 8 15 15 C 1.46504 * 119.99861 * 183.70965 * 13 11 8 16 16 C 1.53006 * 109.47117 * 89.99761 * 15 13 11 17 17 C 1.52996 * 109.46768 * 180.02562 * 16 15 13 18 18 N 1.46500 * 109.47006 * 179.97438 * 17 16 15 19 19 C 1.46506 * 119.99664 * 89.99626 * 18 17 16 20 20 C 1.36935 * 120.00682 * 270.00231 * 18 17 16 21 21 H 1.08000 * 120.00530 * 147.25860 * 20 18 17 22 22 C 1.38815 * 119.99334 * 327.25718 * 20 18 17 23 23 N 1.31621 * 119.99448 * 154.43284 * 22 20 18 24 24 Si 1.86800 * 120.00189 * 334.42583 * 22 20 18 25 25 H 1.48507 * 109.46769 * 95.34747 * 24 22 20 26 26 H 1.48500 * 109.46942 * 215.34687 * 24 22 20 27 27 H 1.48498 * 109.47054 * 335.34866 * 24 22 20 28 28 C 1.38164 * 120.05431 * 0.02562 * 7 6 5 29 29 H 1.09001 * 109.47479 * 300.00087 * 1 2 3 30 30 H 1.09005 * 109.47165 * 59.99787 * 1 2 3 31 31 H 1.08999 * 109.47155 * 179.97438 * 1 2 3 32 32 H 1.07998 * 120.03270 * 0.02901 * 4 3 2 33 33 H 1.07998 * 119.97594 * 179.74687 * 5 4 3 34 34 H 1.08001 * 119.94495 * 179.97438 * 6 5 4 35 35 H 1.09001 * 109.46859 * 178.86018 * 10 8 7 36 36 H 1.09001 * 109.47471 * 298.86549 * 10 8 7 37 37 H 1.09002 * 109.46868 * 58.86603 * 10 8 7 38 38 H 1.08993 * 109.46603 * 85.91158 * 14 13 11 39 39 H 1.09003 * 109.46892 * 205.91185 * 14 13 11 40 40 H 1.09002 * 109.47115 * 325.91401 * 14 13 11 41 41 H 1.08994 * 109.47035 * 209.99561 * 15 13 11 42 42 H 1.08997 * 109.46784 * 330.00156 * 15 13 11 43 43 H 1.09004 * 109.47039 * 299.99694 * 16 15 13 44 44 H 1.08993 * 109.47275 * 60.00139 * 16 15 13 45 45 H 1.08996 * 109.47381 * 299.99997 * 17 16 15 46 46 H 1.09006 * 109.47352 * 60.00209 * 17 16 15 47 47 H 1.09003 * 109.46628 * 95.02306 * 19 18 17 48 48 H 1.09000 * 109.47439 * 215.02008 * 19 18 17 49 49 H 1.08998 * 109.47289 * 335.02408 * 19 18 17 50 50 H 0.97002 * 119.99604 * 179.97438 * 23 22 20 51 51 H 1.08004 * 120.02265 * 179.97438 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2914 2.3753 0.0044 5 6 1.9208 3.6048 -0.0013 6 6 3.3019 3.6758 -0.0066 7 6 4.0560 2.5170 -0.0057 8 6 5.5608 2.5981 -0.0121 9 1 5.9788 1.5915 -0.0108 10 6 6.0363 3.3496 1.2330 11 6 6.0191 3.3308 -1.2467 12 8 5.2223 3.9618 -1.9082 13 7 7.3146 3.2847 -1.6156 14 6 8.2614 2.4572 -0.8637 15 6 7.7761 4.0621 -2.7684 16 6 8.2235 5.4490 -2.3021 17 6 8.7048 6.2611 -3.5061 18 7 9.1326 7.5893 -3.0598 19 6 10.5242 7.8150 -2.6614 20 6 8.2318 8.6197 -3.0149 21 1 8.3241 9.3851 -2.2586 22 6 7.2000 8.6803 -3.9415 23 7 6.0850 9.3133 -3.6442 24 14 7.3942 7.8638 -5.6104 25 1 6.7933 6.5063 -5.5701 26 1 6.7063 8.6792 -6.6434 27 1 8.8372 7.7566 -5.9441 28 6 3.4311 1.2848 0.0000 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 0.2128 2.3204 0.0082 33 1 1.3340 4.5114 -0.0021 34 1 3.7922 4.6381 -0.0115 35 1 7.1255 3.3906 1.2387 36 1 5.6346 4.3628 1.2215 37 1 5.6876 2.8306 2.1258 38 1 8.2384 1.4378 -1.2488 39 1 9.2665 2.8645 -0.9733 40 1 7.9836 2.4538 0.1903 41 1 8.6143 3.5496 -3.2402 42 1 6.9624 4.1652 -3.4863 43 1 7.3852 5.9616 -1.8302 44 1 9.0371 5.3461 -1.5842 45 1 9.5429 5.7487 -3.9784 46 1 7.8908 6.3641 -4.2238 47 1 11.0862 8.2054 -3.5098 48 1 10.5558 8.5342 -1.8429 49 1 10.9661 6.8736 -2.3351 50 1 5.3641 9.3560 -4.2919 51 1 4.0207 0.3799 0.0003 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733781782.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:41:28 Heat of formation + Delta-G solvation = -38.566756 kcal Electronic energy + Delta-G solvation = -29398.569312 eV Core-core repulsion = 25491.702203 eV Total energy + Delta-G solvation = -3906.867109 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -41.63645 -40.71353 -38.64595 -38.07185 -36.68288 -35.12134 -33.89815 -32.63769 -31.70693 -30.09810 -28.30884 -28.16131 -27.85845 -27.13104 -25.22560 -23.77641 -23.56603 -22.57265 -21.99695 -20.13268 -18.80088 -18.63779 -18.18525 -17.44918 -17.14863 -17.06077 -16.75461 -16.61077 -16.36828 -15.92838 -15.64464 -15.26579 -15.00337 -14.88479 -14.61109 -14.46630 -14.27985 -14.13744 -13.98515 -13.61648 -13.49525 -13.39713 -13.22788 -13.05332 -12.95606 -12.75048 -12.71111 -12.46364 -12.39994 -12.33736 -12.22630 -12.17140 -11.92553 -11.74435 -11.70670 -11.30970 -10.73736 -10.62365 -9.85005 -9.65068 -9.15400 -8.84700 -8.24394 -5.54257 0.27068 0.47387 1.26712 1.34320 1.46478 1.62370 2.02885 2.35881 2.39210 2.77527 2.98863 3.43609 3.48638 3.67053 3.84413 4.01466 4.07202 4.09585 4.18128 4.26930 4.30349 4.33602 4.36829 4.38650 4.42018 4.52968 4.54617 4.61742 4.64787 4.71086 4.72325 4.73603 4.74999 4.83947 4.85549 4.97833 5.03487 5.04263 5.11789 5.22566 5.25063 5.27801 5.40072 5.47079 5.60047 5.65168 5.74160 5.88819 6.09753 6.41772 6.44483 6.95451 7.21789 7.63338 8.01202 8.95721 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.014472 B = 0.002906 C = 0.002639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1934.239870 B = 9631.765495 C =10606.746694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.331 6.331 3 C 0.112 3.888 4 C -0.207 4.207 5 C -0.096 4.096 6 C -0.137 4.137 7 C -0.041 4.041 8 C -0.060 4.060 9 H 0.137 0.863 10 C -0.139 4.139 11 C 0.504 3.496 12 O -0.581 6.581 13 N -0.613 5.613 14 C 0.061 3.939 15 C 0.120 3.880 16 C -0.127 4.127 17 C 0.133 3.867 18 N -0.628 5.628 19 C 0.124 3.876 20 C -0.259 4.259 21 H 0.041 0.959 22 C -0.026 4.026 23 N -0.947 5.947 24 Si 0.943 3.057 25 H -0.281 1.281 26 H -0.309 1.309 27 H -0.252 1.252 28 C -0.150 4.150 29 H 0.065 0.935 30 H 0.058 0.942 31 H 0.122 0.878 32 H 0.149 0.851 33 H 0.133 0.867 34 H 0.098 0.902 35 H 0.088 0.912 36 H 0.038 0.962 37 H 0.093 0.907 38 H 0.079 0.921 39 H 0.089 0.911 40 H 0.093 0.907 41 H 0.114 0.886 42 H 0.044 0.956 43 H 0.016 0.984 44 H 0.078 0.922 45 H 0.080 0.920 46 H 0.023 0.977 47 H 0.016 0.984 48 H 0.032 0.968 49 H 0.071 0.929 50 H 0.260 0.740 51 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.632 -25.193 11.344 27.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.245 6.245 3 C 0.067 3.933 4 C -0.226 4.226 5 C -0.114 4.114 6 C -0.156 4.156 7 C -0.042 4.042 8 C -0.081 4.081 9 H 0.155 0.845 10 C -0.196 4.196 11 C 0.292 3.708 12 O -0.460 6.460 13 N -0.345 5.345 14 C -0.080 4.080 15 C -0.004 4.004 16 C -0.168 4.168 17 C 0.008 3.992 18 N -0.352 5.352 19 C -0.020 4.020 20 C -0.389 4.389 21 H 0.059 0.941 22 C -0.223 4.223 23 N -0.592 5.592 24 Si 0.772 3.228 25 H -0.209 1.209 26 H -0.238 1.238 27 H -0.176 1.176 28 C -0.169 4.169 29 H 0.084 0.916 30 H 0.076 0.924 31 H 0.140 0.860 32 H 0.167 0.833 33 H 0.151 0.849 34 H 0.117 0.883 35 H 0.107 0.893 36 H 0.057 0.943 37 H 0.112 0.888 38 H 0.098 0.902 39 H 0.108 0.892 40 H 0.111 0.889 41 H 0.132 0.868 42 H 0.062 0.938 43 H 0.035 0.965 44 H 0.097 0.903 45 H 0.098 0.902 46 H 0.041 0.959 47 H 0.034 0.966 48 H 0.051 0.949 49 H 0.090 0.910 50 H 0.069 0.931 51 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -2.030 -25.002 10.956 27.373 hybrid contribution -0.886 0.948 -1.045 1.666 sum -2.917 -24.055 9.912 26.180 Atomic orbital electron populations 1.23335 0.76588 1.05611 1.02088 1.86024 1.23322 1.26332 1.88831 1.19056 0.92483 0.84664 0.97088 1.21441 1.01098 0.91748 1.08295 1.21140 0.94325 0.98178 0.97734 1.20940 0.94452 0.98100 1.02071 1.19270 0.94385 0.92409 0.98110 1.20323 0.92009 1.02477 0.93248 0.84505 1.21874 1.02699 0.99576 0.95453 1.21191 0.82102 0.80806 0.86676 1.90752 1.54476 1.44696 1.56055 1.47970 1.08516 1.46707 1.31322 1.22332 0.93340 0.94996 0.97302 1.21406 0.99755 0.91278 0.87935 1.22207 1.00027 0.94772 0.99755 1.21232 0.97911 0.85180 0.94923 1.44236 1.06800 1.05304 1.78892 1.21184 0.83207 1.00129 0.97456 1.18684 1.06138 1.04676 1.09406 0.94107 1.25987 0.95629 0.99177 1.01460 1.70044 1.04659 1.48657 1.35794 0.85880 0.78844 0.76832 0.81231 1.20883 1.23758 1.17603 1.20418 0.91894 0.97888 1.06690 0.91602 0.92353 0.86005 0.83298 0.84919 0.88331 0.89304 0.94250 0.88793 0.90248 0.89179 0.88882 0.86819 0.93785 0.96510 0.90344 0.90160 0.95862 0.96590 0.94920 0.90988 0.93114 0.83296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 9.81 113.37 1.11 1.33 16 2 O -0.33 -6.83 10.50 -92.41 -0.97 -7.80 16 3 C 0.11 2.68 6.69 22.51 0.15 2.83 16 4 C -0.21 -4.84 9.04 22.37 0.20 -4.64 16 5 C -0.10 -2.62 10.04 22.26 0.22 -2.40 16 6 C -0.14 -4.30 7.85 22.29 0.17 -4.12 16 7 C -0.04 -1.11 4.54 -19.88 -0.09 -1.20 16 8 C -0.06 -1.34 2.07 -12.28 -0.03 -1.37 16 9 H 0.14 2.02 7.20 -2.39 -0.02 2.00 16 10 C -0.14 -2.65 8.70 71.98 0.63 -2.03 16 11 C 0.50 16.11 6.84 87.66 0.60 16.71 16 12 O -0.58 -25.75 14.24 -3.01 -0.04 -25.79 16 13 N -0.61 -16.22 2.87 -846.74 -2.43 -18.65 16 14 C 0.06 0.85 9.86 127.77 1.26 2.11 16 15 C 0.12 3.77 5.42 86.38 0.47 4.23 16 16 C -0.13 -4.82 5.86 30.59 0.18 -4.64 16 17 C 0.13 5.67 4.53 86.38 0.39 6.06 16 18 N -0.63 -30.47 2.56 -726.92 -1.86 -32.33 16 19 C 0.12 4.73 10.69 127.77 1.37 6.10 16 20 C -0.26 -15.54 9.96 84.03 0.84 -14.70 16 21 H 0.04 2.69 8.06 -2.91 -0.02 2.67 16 22 C -0.03 -1.64 5.28 84.86 0.45 -1.19 16 23 N -0.95 -63.43 13.97 21.65 0.30 -63.13 16 24 Si 0.94 49.48 25.06 68.60 1.72 51.20 16 25 H -0.28 -14.49 6.62 99.48 0.66 -13.83 16 26 H -0.31 -16.33 7.11 99.48 0.71 -15.62 16 27 H -0.25 -12.25 7.11 99.48 0.71 -11.55 16 28 C -0.15 -3.58 9.61 22.37 0.21 -3.37 16 29 H 0.07 0.66 7.65 -2.39 -0.02 0.65 16 30 H 0.06 0.68 7.67 -2.38 -0.02 0.66 16 31 H 0.12 0.88 8.14 -2.39 -0.02 0.86 16 32 H 0.15 2.59 6.30 -2.91 -0.02 2.57 16 33 H 0.13 3.24 8.06 -2.91 -0.02 3.22 16 34 H 0.10 3.58 7.18 -2.91 -0.02 3.56 16 35 H 0.09 1.33 5.86 -2.39 -0.01 1.32 16 36 H 0.04 0.99 7.43 -2.39 -0.02 0.97 16 37 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 38 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 39 H 0.09 1.03 8.04 -2.39 -0.02 1.01 16 40 H 0.09 0.97 4.55 -2.39 -0.01 0.95 16 41 H 0.11 2.59 8.07 -2.39 -0.02 2.57 16 42 H 0.04 1.73 7.37 -2.39 -0.02 1.71 16 43 H 0.02 0.80 8.14 -2.38 -0.02 0.78 16 44 H 0.08 2.53 8.14 -2.39 -0.02 2.51 16 45 H 0.08 2.75 8.07 -2.39 -0.02 2.73 16 46 H 0.02 1.15 2.88 -2.38 -0.01 1.15 16 47 H 0.02 0.59 8.14 -2.39 -0.02 0.57 16 48 H 0.03 1.25 8.08 -2.39 -0.02 1.24 16 49 H 0.07 2.14 8.03 -2.39 -0.02 2.12 16 50 H 0.26 16.64 8.31 -92.71 -0.77 15.87 16 51 H 0.15 2.77 7.94 -2.91 -0.02 2.74 16 Total: -1.00 -86.98 402.41 5.71 -81.27 By element: Atomic # 1 Polarization: 14.66 SS G_CDS: 0.86 Total: 15.52 kcal Atomic # 6 Polarization: -8.43 SS G_CDS: 8.14 Total: -0.29 kcal Atomic # 7 Polarization: -110.12 SS G_CDS: -3.99 Total: -114.11 kcal Atomic # 8 Polarization: -32.58 SS G_CDS: -1.01 Total: -33.59 kcal Atomic # 14 Polarization: 49.48 SS G_CDS: 1.72 Total: 51.20 kcal Total: -86.98 5.71 -81.27 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733781782.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.701 kcal (2) G-P(sol) polarization free energy of solvation -86.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds