Wall clock time and date at job start Tue Mar 31 2020 19:41:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35906 * 117.00124 * 2 1 4 4 C 1.38758 * 120.05244 * 0.20777 * 3 2 1 5 5 C 1.38124 * 119.94146 * 180.22926 * 4 3 2 6 6 C 1.38280 * 120.05584 * 359.81160 * 5 4 3 7 7 C 1.38251 * 120.11342 * 359.97438 * 6 5 4 8 8 C 1.50700 * 119.97002 * 179.97438 * 7 6 5 9 9 H 1.09004 * 109.46371 * 179.97438 * 8 7 6 10 10 C 1.52996 * 109.47316 * 299.97069 * 8 7 6 11 11 C 1.50696 * 109.47257 * 59.97700 * 8 7 6 12 12 O 1.21282 * 120.00384 * 359.97438 * 11 8 7 13 13 N 1.34783 * 119.99921 * 179.97438 * 11 8 7 14 14 C 1.46501 * 119.99665 * 359.97438 * 13 11 8 15 15 C 1.46498 * 119.99860 * 179.97438 * 13 11 8 16 16 C 1.52998 * 109.47148 * 90.00187 * 15 13 11 17 17 C 1.52997 * 109.46967 * 179.97438 * 16 15 13 18 18 N 1.46504 * 109.47259 * 180.02562 * 17 16 15 19 19 C 1.46500 * 120.00046 * 89.99587 * 18 17 16 20 20 C 1.36934 * 119.99753 * 270.00067 * 18 17 16 21 21 H 1.07999 * 120.00068 * 23.04221 * 20 18 17 22 22 C 1.38812 * 120.00170 * 203.04276 * 20 18 17 23 23 N 1.31618 * 119.99559 * 12.92780 * 22 20 18 24 24 Si 1.86794 * 120.00236 * 192.92703 * 22 20 18 25 25 H 1.48508 * 109.47088 * 90.00122 * 24 22 20 26 26 H 1.48503 * 109.47177 * 209.99801 * 24 22 20 27 27 H 1.48497 * 109.47350 * 329.99947 * 24 22 20 28 28 C 1.38164 * 120.05274 * 359.97142 * 7 6 5 29 29 H 1.09003 * 109.47044 * 59.99892 * 1 2 3 30 30 H 1.09000 * 109.47102 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47162 * 300.00164 * 1 2 3 32 32 H 1.08002 * 120.03152 * 0.02562 * 4 3 2 33 33 H 1.08006 * 119.97138 * 179.79202 * 5 4 3 34 34 H 1.08000 * 119.94606 * 179.97438 * 6 5 4 35 35 H 1.09000 * 109.47450 * 300.00740 * 10 8 7 36 36 H 1.09002 * 109.46887 * 60.00325 * 10 8 7 37 37 H 1.08999 * 109.47313 * 179.97438 * 10 8 7 38 38 H 1.09000 * 109.47235 * 90.00241 * 14 13 11 39 39 H 1.09001 * 109.46901 * 209.99912 * 14 13 11 40 40 H 1.08996 * 109.47144 * 329.99788 * 14 13 11 41 41 H 1.08998 * 109.46829 * 210.00089 * 15 13 11 42 42 H 1.08999 * 109.47021 * 329.99858 * 15 13 11 43 43 H 1.08998 * 109.47176 * 299.99689 * 16 15 13 44 44 H 1.08999 * 109.46908 * 59.99842 * 16 15 13 45 45 H 1.09007 * 109.47220 * 299.99871 * 17 16 15 46 46 H 1.08997 * 109.47754 * 59.99884 * 17 16 15 47 47 H 1.08995 * 109.47018 * 95.12911 * 19 18 17 48 48 H 1.09000 * 109.46955 * 215.12408 * 19 18 17 49 49 H 1.09000 * 109.47110 * 335.12653 * 19 18 17 50 50 H 0.97008 * 120.00055 * 179.97438 * 23 22 20 51 51 H 1.07997 * 120.02479 * 179.97438 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3753 0.0044 5 6 1.9208 3.6048 -0.0004 6 6 3.3018 3.6758 -0.0056 7 6 4.0559 2.5171 -0.0055 8 6 5.5607 2.5983 -0.0118 9 1 5.9788 1.5916 -0.0103 10 6 6.0262 3.3419 -1.2652 11 6 6.0290 3.3385 1.2145 12 8 5.2204 3.7593 2.0146 13 7 7.3464 3.5331 1.4221 14 6 8.3232 3.0243 0.4559 15 6 7.8016 4.2532 2.6139 16 6 8.0296 3.2591 3.7544 17 6 8.5055 4.0111 4.9989 18 7 8.7244 3.0592 6.0908 19 6 10.0380 2.4347 6.2659 20 6 7.7011 2.7532 6.9477 21 1 6.6763 2.8922 6.6365 22 6 7.9808 2.2643 8.2164 23 7 9.2062 2.3316 8.6921 24 14 6.6183 1.5109 9.2485 25 1 6.5386 0.0534 8.9753 26 1 6.9095 1.7294 10.6882 27 1 5.3238 2.1510 8.9026 28 6 3.4311 1.2849 0.0004 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 0.2128 2.3204 0.0082 33 1 1.3339 4.5115 -0.0005 34 1 3.7921 4.6381 -0.0098 35 1 5.6874 2.8065 -2.1522 36 1 5.6081 4.3485 -1.2668 37 1 7.1146 3.4010 -1.2695 38 1 8.5160 3.7850 -0.3006 39 1 9.2521 2.7815 0.9720 40 1 7.9282 2.1281 -0.0223 41 1 8.7346 4.7709 2.3913 42 1 7.0449 4.9794 2.9107 43 1 7.0966 2.7414 3.9770 44 1 8.7862 2.5329 3.4576 45 1 9.4387 4.5286 4.7760 46 1 7.7493 4.7376 5.2959 47 1 10.6158 3.0022 6.9953 48 1 9.9097 1.4120 6.6204 49 1 10.5658 2.4252 5.3122 50 1 9.4017 1.9902 9.5788 51 1 4.0206 0.3800 0.0001 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733781783.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:41:34 Heat of formation + Delta-G solvation = -19.922370 kcal Electronic energy + Delta-G solvation = -28939.001133 eV Core-core repulsion = 25032.942506 eV Total energy + Delta-G solvation = -3906.058627 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -40.69362 -39.78791 -37.69972 -36.18560 -35.33199 -34.19741 -32.14682 -30.92364 -30.17167 -29.09085 -27.53129 -27.05239 -26.00037 -25.57238 -24.21113 -22.73046 -22.39589 -21.08852 -20.14085 -19.20265 -17.79826 -17.18456 -16.61438 -16.31929 -16.13436 -15.94248 -15.80865 -15.35787 -14.85498 -14.46687 -14.24804 -13.97874 -13.80029 -13.55618 -13.36259 -13.27030 -12.92346 -12.86434 -12.70634 -12.50564 -12.38677 -12.29883 -11.92535 -11.76179 -11.49531 -11.44997 -11.21945 -11.16032 -10.89919 -10.87414 -10.75494 -10.65211 -10.37581 -10.09422 -9.78999 -9.67231 -9.60842 -8.95464 -8.61553 -8.40686 -8.27470 -6.63775 -5.63356 -3.09591 1.16962 1.38435 2.71743 2.97188 3.14750 3.45443 3.51108 3.54108 3.67491 4.33803 4.50302 4.58999 4.64920 4.79827 4.85629 4.88703 4.91876 4.93739 5.05456 5.19210 5.19895 5.25083 5.30995 5.35735 5.42884 5.45684 5.49460 5.55624 5.58737 5.61317 5.85020 5.86354 5.87773 6.09447 6.14623 6.15442 6.23106 6.33345 6.49142 6.52523 6.61472 6.70218 6.80317 6.91492 7.10991 7.23734 7.44273 7.45217 7.79473 7.91179 8.27656 8.49968 9.33880 9.97364 10.46033 11.41553 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.010307 B = 0.002828 C = 0.002359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2716.004381 B = 9900.089132 C =11868.947800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.319 6.319 3 C 0.122 3.878 4 C -0.208 4.208 5 C -0.083 4.083 6 C -0.119 4.119 7 C -0.026 4.026 8 C -0.071 4.071 9 H 0.105 0.895 10 C -0.152 4.152 11 C 0.516 3.484 12 O -0.522 6.522 13 N -0.614 5.614 14 C 0.075 3.925 15 C 0.117 3.883 16 C -0.150 4.150 17 C 0.156 3.844 18 N -0.604 5.604 19 C 0.164 3.836 20 C -0.250 4.250 21 H 0.068 0.932 22 C -0.001 4.001 23 N -0.911 5.911 24 Si 0.903 3.097 25 H -0.289 1.289 26 H -0.291 1.291 27 H -0.279 1.279 28 C -0.143 4.143 29 H 0.053 0.947 30 H 0.098 0.902 31 H 0.055 0.945 32 H 0.125 0.875 33 H 0.124 0.876 34 H 0.121 0.879 35 H 0.068 0.932 36 H 0.062 0.938 37 H 0.076 0.924 38 H 0.058 0.942 39 H 0.073 0.927 40 H 0.071 0.929 41 H 0.072 0.928 42 H 0.081 0.919 43 H 0.063 0.937 44 H 0.051 0.949 45 H 0.034 0.966 46 H 0.047 0.953 47 H 0.030 0.970 48 H 0.039 0.961 49 H -0.004 1.004 50 H 0.251 0.749 51 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.662 0.419 -26.082 27.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.233 6.233 3 C 0.077 3.923 4 C -0.227 4.227 5 C -0.101 4.101 6 C -0.137 4.137 7 C -0.027 4.027 8 C -0.093 4.093 9 H 0.123 0.877 10 C -0.209 4.209 11 C 0.302 3.698 12 O -0.397 6.397 13 N -0.348 5.348 14 C -0.068 4.068 15 C -0.005 4.005 16 C -0.192 4.192 17 C 0.028 3.972 18 N -0.326 5.326 19 C 0.019 3.981 20 C -0.380 4.380 21 H 0.086 0.914 22 C -0.198 4.198 23 N -0.556 5.556 24 Si 0.733 3.267 25 H -0.216 1.216 26 H -0.218 1.218 27 H -0.204 1.204 28 C -0.161 4.161 29 H 0.072 0.928 30 H 0.117 0.883 31 H 0.074 0.926 32 H 0.143 0.857 33 H 0.142 0.858 34 H 0.139 0.861 35 H 0.087 0.913 36 H 0.082 0.918 37 H 0.095 0.905 38 H 0.076 0.924 39 H 0.092 0.908 40 H 0.089 0.911 41 H 0.090 0.910 42 H 0.099 0.901 43 H 0.082 0.918 44 H 0.070 0.930 45 H 0.052 0.948 46 H 0.065 0.935 47 H 0.049 0.951 48 H 0.057 0.943 49 H 0.014 0.986 50 H 0.061 0.939 51 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -9.930 0.409 -25.458 27.329 hybrid contribution -0.871 -0.498 0.719 1.235 sum -10.801 -0.089 -24.739 26.994 Atomic orbital electron populations 1.23032 0.78528 1.03817 1.01296 1.86062 1.21270 1.27007 1.88926 1.18892 0.92148 0.84122 0.97105 1.21196 0.99826 0.92461 1.09170 1.20877 0.94519 0.96922 0.97764 1.20801 0.93490 0.97981 1.01438 1.19052 0.93419 0.92577 0.97646 1.20280 0.92790 1.01399 0.94794 0.87747 1.22053 1.02567 1.00698 0.95562 1.20370 0.82147 0.80179 0.87065 1.90755 1.52948 1.49717 1.46320 1.47890 1.05631 1.57115 1.24125 1.21956 0.93335 0.98934 0.92582 1.21583 0.99692 0.95072 0.84181 1.22598 1.01943 0.98849 0.95790 1.20627 0.97722 0.91405 0.87489 1.43888 1.09985 1.47829 1.30933 1.20766 0.85592 0.97609 0.94103 1.19229 0.87412 1.38406 0.92916 0.91449 1.25008 0.96502 1.01918 0.96404 1.70074 1.18525 1.49848 1.17186 0.86263 0.81618 0.79333 0.79465 1.21570 1.21766 1.20423 1.20217 0.91476 0.97840 1.06587 0.92793 0.88336 0.92621 0.85701 0.85838 0.86128 0.91299 0.91844 0.90515 0.92351 0.90802 0.91055 0.91002 0.90070 0.91815 0.92975 0.94786 0.93466 0.95145 0.94266 0.98585 0.93889 0.85322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 9.81 101.05 0.99 1.20 16 2 O -0.32 -3.67 10.50 -19.44 -0.20 -3.87 16 3 C 0.12 1.50 6.69 -39.22 -0.26 1.24 16 4 C -0.21 -2.28 9.04 -39.43 -0.36 -2.64 16 5 C -0.08 -0.92 10.04 -39.61 -0.40 -1.32 16 6 C -0.12 -1.46 7.92 -39.56 -0.31 -1.77 16 7 C -0.03 -0.32 4.40 -104.64 -0.46 -0.78 16 8 C -0.07 -0.76 2.10 -92.93 -0.19 -0.96 16 9 H 0.10 0.97 7.13 -51.93 -0.37 0.60 16 10 C -0.15 -1.15 8.64 37.16 0.32 -0.83 16 11 C 0.52 7.37 6.94 -10.98 -0.08 7.29 16 12 O -0.52 -9.78 14.68 5.56 0.08 -9.70 16 13 N -0.61 -7.81 2.87 -181.58 -0.52 -8.33 16 14 C 0.08 0.63 8.80 59.85 0.53 1.16 16 15 C 0.12 1.71 5.41 -4.04 -0.02 1.69 16 16 C -0.15 -2.78 5.86 -26.73 -0.16 -2.94 16 17 C 0.16 3.33 5.64 -4.04 -0.02 3.31 16 18 N -0.60 -16.00 2.92 -181.12 -0.53 -16.53 16 19 C 0.16 4.20 8.98 59.85 0.54 4.73 16 20 C -0.25 -7.29 9.65 -15.06 -0.15 -7.44 16 21 H 0.07 1.97 7.86 -52.49 -0.41 1.56 16 22 C 0.00 -0.02 5.10 -17.43 -0.09 -0.11 16 23 N -0.91 -27.63 10.71 55.49 0.59 -27.03 16 24 Si 0.90 23.05 29.57 -169.99 -5.03 18.02 16 25 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 26 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 27 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 28 C -0.14 -1.78 9.61 -39.44 -0.38 -2.15 16 29 H 0.05 0.32 7.67 -51.93 -0.40 -0.08 16 30 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.06 0.38 7.65 -51.93 -0.40 -0.01 16 32 H 0.13 1.06 6.30 -52.49 -0.33 0.73 16 33 H 0.12 1.09 8.06 -52.48 -0.42 0.66 16 34 H 0.12 1.43 7.51 -52.49 -0.39 1.04 16 35 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.06 0.51 7.39 -51.93 -0.38 0.13 16 37 H 0.08 0.46 4.53 -51.93 -0.24 0.23 16 38 H 0.06 0.37 6.95 -51.93 -0.36 0.01 16 39 H 0.07 0.61 8.07 -51.93 -0.42 0.19 16 40 H 0.07 0.49 6.01 -51.93 -0.31 0.17 16 41 H 0.07 0.87 8.07 -51.93 -0.42 0.45 16 42 H 0.08 1.31 7.42 -51.93 -0.39 0.92 16 43 H 0.06 1.40 8.14 -51.93 -0.42 0.97 16 44 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 45 H 0.03 0.66 8.07 -51.92 -0.42 0.24 16 46 H 0.05 1.04 8.04 -51.93 -0.42 0.62 16 47 H 0.03 0.83 7.34 -51.93 -0.38 0.45 16 48 H 0.04 1.07 7.34 -51.93 -0.38 0.69 16 49 H 0.00 -0.10 8.03 -51.93 -0.42 -0.51 16 50 H 0.25 7.35 8.31 -40.82 -0.34 7.01 16 51 H 0.13 1.44 7.94 -52.49 -0.42 1.02 16 LS Contribution 405.50 15.07 6.11 6.11 Total: -1.00 -35.97 405.50 -8.50 -44.47 By element: Atomic # 1 Polarization: 5.69 SS G_CDS: -8.50 Total: -2.81 kcal Atomic # 6 Polarization: 0.17 SS G_CDS: -0.50 Total: -0.33 kcal Atomic # 7 Polarization: -51.44 SS G_CDS: -0.46 Total: -51.90 kcal Atomic # 8 Polarization: -13.45 SS G_CDS: -0.12 Total: -13.57 kcal Atomic # 14 Polarization: 23.05 SS G_CDS: -5.03 Total: 18.02 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -35.97 -8.50 -44.47 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733781783.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.548 kcal (2) G-P(sol) polarization free energy of solvation -35.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.470 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds