Wall clock time and date at job start Tue Mar 31 2020 19:41:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35906 * 117.00124 * 2 1 4 4 C 1.38758 * 120.05244 * 0.20777 * 3 2 1 5 5 C 1.38124 * 119.94146 * 180.22926 * 4 3 2 6 6 C 1.38280 * 120.05584 * 359.81160 * 5 4 3 7 7 C 1.38251 * 120.11342 * 359.97438 * 6 5 4 8 8 C 1.50700 * 119.97002 * 179.97438 * 7 6 5 9 9 H 1.09004 * 109.46371 * 179.97438 * 8 7 6 10 10 C 1.52996 * 109.47316 * 299.97069 * 8 7 6 11 11 C 1.50696 * 109.47257 * 59.97700 * 8 7 6 12 12 O 1.21282 * 120.00384 * 359.97438 * 11 8 7 13 13 N 1.34783 * 119.99921 * 179.97438 * 11 8 7 14 14 C 1.46501 * 119.99665 * 359.97438 * 13 11 8 15 15 C 1.46498 * 119.99860 * 179.97438 * 13 11 8 16 16 C 1.52998 * 109.47148 * 90.00187 * 15 13 11 17 17 C 1.52997 * 109.46967 * 179.97438 * 16 15 13 18 18 N 1.46504 * 109.47259 * 180.02562 * 17 16 15 19 19 C 1.46500 * 120.00046 * 89.99587 * 18 17 16 20 20 C 1.36934 * 119.99753 * 270.00067 * 18 17 16 21 21 H 1.07999 * 120.00068 * 23.04221 * 20 18 17 22 22 C 1.38812 * 120.00170 * 203.04276 * 20 18 17 23 23 N 1.31618 * 119.99559 * 12.92780 * 22 20 18 24 24 Si 1.86794 * 120.00236 * 192.92703 * 22 20 18 25 25 H 1.48508 * 109.47088 * 90.00122 * 24 22 20 26 26 H 1.48503 * 109.47177 * 209.99801 * 24 22 20 27 27 H 1.48497 * 109.47350 * 329.99947 * 24 22 20 28 28 C 1.38164 * 120.05274 * 359.97142 * 7 6 5 29 29 H 1.09003 * 109.47044 * 59.99892 * 1 2 3 30 30 H 1.09000 * 109.47102 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47162 * 300.00164 * 1 2 3 32 32 H 1.08002 * 120.03152 * 0.02562 * 4 3 2 33 33 H 1.08006 * 119.97138 * 179.79202 * 5 4 3 34 34 H 1.08000 * 119.94606 * 179.97438 * 6 5 4 35 35 H 1.09000 * 109.47450 * 300.00740 * 10 8 7 36 36 H 1.09002 * 109.46887 * 60.00325 * 10 8 7 37 37 H 1.08999 * 109.47313 * 179.97438 * 10 8 7 38 38 H 1.09000 * 109.47235 * 90.00241 * 14 13 11 39 39 H 1.09001 * 109.46901 * 209.99912 * 14 13 11 40 40 H 1.08996 * 109.47144 * 329.99788 * 14 13 11 41 41 H 1.08998 * 109.46829 * 210.00089 * 15 13 11 42 42 H 1.08999 * 109.47021 * 329.99858 * 15 13 11 43 43 H 1.08998 * 109.47176 * 299.99689 * 16 15 13 44 44 H 1.08999 * 109.46908 * 59.99842 * 16 15 13 45 45 H 1.09007 * 109.47220 * 299.99871 * 17 16 15 46 46 H 1.08997 * 109.47754 * 59.99884 * 17 16 15 47 47 H 1.08995 * 109.47018 * 95.12911 * 19 18 17 48 48 H 1.09000 * 109.46955 * 215.12408 * 19 18 17 49 49 H 1.09000 * 109.47110 * 335.12653 * 19 18 17 50 50 H 0.97008 * 120.00055 * 179.97438 * 23 22 20 51 51 H 1.07997 * 120.02479 * 179.97438 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3753 0.0044 5 6 1.9208 3.6048 -0.0004 6 6 3.3018 3.6758 -0.0056 7 6 4.0559 2.5171 -0.0055 8 6 5.5607 2.5983 -0.0118 9 1 5.9788 1.5916 -0.0103 10 6 6.0262 3.3419 -1.2652 11 6 6.0290 3.3385 1.2145 12 8 5.2204 3.7593 2.0146 13 7 7.3464 3.5331 1.4221 14 6 8.3232 3.0243 0.4559 15 6 7.8016 4.2532 2.6139 16 6 8.0296 3.2591 3.7544 17 6 8.5055 4.0111 4.9989 18 7 8.7244 3.0592 6.0908 19 6 10.0380 2.4347 6.2659 20 6 7.7011 2.7532 6.9477 21 1 6.6763 2.8922 6.6365 22 6 7.9808 2.2643 8.2164 23 7 9.2062 2.3316 8.6921 24 14 6.6183 1.5109 9.2485 25 1 6.5386 0.0534 8.9753 26 1 6.9095 1.7294 10.6882 27 1 5.3238 2.1510 8.9026 28 6 3.4311 1.2849 0.0004 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 0.2128 2.3204 0.0082 33 1 1.3339 4.5115 -0.0005 34 1 3.7921 4.6381 -0.0098 35 1 5.6874 2.8065 -2.1522 36 1 5.6081 4.3485 -1.2668 37 1 7.1146 3.4010 -1.2695 38 1 8.5160 3.7850 -0.3006 39 1 9.2521 2.7815 0.9720 40 1 7.9282 2.1281 -0.0223 41 1 8.7346 4.7709 2.3913 42 1 7.0449 4.9794 2.9107 43 1 7.0966 2.7414 3.9770 44 1 8.7862 2.5329 3.4576 45 1 9.4387 4.5286 4.7760 46 1 7.7493 4.7376 5.2959 47 1 10.6158 3.0022 6.9953 48 1 9.9097 1.4120 6.6204 49 1 10.5658 2.4252 5.3122 50 1 9.4017 1.9902 9.5788 51 1 4.0206 0.3800 0.0001 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733781783.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:41:33 Heat of formation + Delta-G solvation = -41.631588 kcal Electronic energy + Delta-G solvation = -28939.942515 eV Core-core repulsion = 25032.942506 eV Total energy + Delta-G solvation = -3907.000010 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.62637 -40.70955 -38.59430 -37.86387 -36.69372 -35.18803 -33.88322 -32.05503 -31.59737 -30.00528 -28.20400 -28.04307 -27.86789 -27.09631 -25.22733 -23.92124 -23.56486 -22.25049 -21.81019 -20.17607 -18.78012 -18.63817 -18.09751 -17.29593 -17.14523 -16.88599 -16.69698 -16.61231 -16.30473 -15.82687 -15.55480 -15.26637 -14.89233 -14.65554 -14.55231 -14.45454 -14.30039 -14.11578 -13.69496 -13.53960 -13.31818 -13.16739 -12.98890 -12.96262 -12.79419 -12.68554 -12.54984 -12.51902 -12.30747 -12.24823 -12.17914 -12.10989 -11.91104 -11.89328 -11.66823 -11.42501 -10.74363 -10.65325 -9.83762 -9.62838 -9.14295 -8.77105 -7.86136 -5.35143 0.29992 0.49182 1.40877 1.41855 1.51593 1.65597 2.04692 2.37227 2.47637 2.79554 3.25545 3.48874 3.67250 3.70988 3.85941 4.04899 4.10901 4.14107 4.19603 4.30184 4.32298 4.36994 4.37885 4.41578 4.53776 4.54429 4.61598 4.66166 4.70618 4.73661 4.76197 4.82221 4.86665 4.90869 4.95115 5.00456 5.05594 5.24899 5.26437 5.29008 5.30932 5.46737 5.49918 5.58922 5.60925 5.64758 5.69585 5.78413 6.30862 6.43219 6.45895 7.13371 7.22346 7.86560 8.27791 9.16134 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.010307 B = 0.002828 C = 0.002359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2716.004381 B = 9900.089132 C =11868.947800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.338 6.338 3 C 0.109 3.891 4 C -0.212 4.212 5 C -0.089 4.089 6 C -0.136 4.136 7 C -0.037 4.037 8 C -0.065 4.065 9 H 0.120 0.880 10 C -0.145 4.145 11 C 0.508 3.492 12 O -0.578 6.578 13 N -0.613 5.613 14 C 0.065 3.935 15 C 0.126 3.874 16 C -0.129 4.129 17 C 0.152 3.848 18 N -0.623 5.623 19 C 0.177 3.823 20 C -0.263 4.263 21 H 0.056 0.944 22 C -0.051 4.051 23 N -0.936 5.936 24 Si 0.964 3.036 25 H -0.285 1.285 26 H -0.287 1.287 27 H -0.275 1.275 28 C -0.163 4.163 29 H 0.069 0.931 30 H 0.118 0.882 31 H 0.058 0.942 32 H 0.149 0.851 33 H 0.144 0.856 34 H 0.118 0.882 35 H 0.083 0.917 36 H 0.056 0.944 37 H 0.097 0.903 38 H 0.087 0.913 39 H 0.080 0.920 40 H 0.089 0.911 41 H 0.108 0.892 42 H 0.060 0.940 43 H 0.020 0.980 44 H 0.060 0.940 45 H 0.063 0.937 46 H 0.032 0.968 47 H 0.007 0.993 48 H 0.011 0.989 49 H 0.036 0.964 50 H 0.250 0.750 51 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.553 0.249 -28.352 29.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.252 6.252 3 C 0.064 3.936 4 C -0.230 4.230 5 C -0.107 4.107 6 C -0.154 4.154 7 C -0.038 4.038 8 C -0.086 4.086 9 H 0.138 0.862 10 C -0.202 4.202 11 C 0.297 3.703 12 O -0.457 6.457 13 N -0.345 5.345 14 C -0.077 4.077 15 C 0.002 3.998 16 C -0.170 4.170 17 C 0.026 3.974 18 N -0.347 5.347 19 C 0.033 3.967 20 C -0.394 4.394 21 H 0.074 0.926 22 C -0.246 4.246 23 N -0.583 5.583 24 Si 0.793 3.207 25 H -0.212 1.212 26 H -0.213 1.213 27 H -0.200 1.200 28 C -0.182 4.182 29 H 0.087 0.913 30 H 0.136 0.864 31 H 0.077 0.923 32 H 0.166 0.834 33 H 0.162 0.838 34 H 0.136 0.864 35 H 0.102 0.898 36 H 0.075 0.925 37 H 0.116 0.884 38 H 0.106 0.894 39 H 0.098 0.902 40 H 0.107 0.893 41 H 0.126 0.874 42 H 0.078 0.922 43 H 0.038 0.962 44 H 0.078 0.922 45 H 0.081 0.919 46 H 0.051 0.949 47 H 0.025 0.975 48 H 0.030 0.970 49 H 0.055 0.945 50 H 0.059 0.941 51 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -9.799 0.239 -27.790 29.468 hybrid contribution -0.926 -0.436 1.379 1.718 sum -10.726 -0.197 -26.411 28.507 Atomic orbital electron populations 1.23325 0.76534 1.05502 1.02169 1.86034 1.23437 1.26840 1.88867 1.19123 0.92446 0.84866 0.97148 1.21474 1.01062 0.91952 1.08526 1.21199 0.94455 0.97986 0.97100 1.20942 0.94236 0.97988 1.02229 1.19286 0.94473 0.92528 0.97515 1.20325 0.91910 1.01996 0.94343 0.86186 1.22058 1.03792 1.00003 0.94301 1.21069 0.82211 0.79574 0.87487 1.90725 1.54514 1.52108 1.48395 1.47971 1.06070 1.56438 1.23974 1.22320 0.92423 1.00579 0.92345 1.21366 1.00753 0.93747 0.83898 1.22276 0.99638 0.99135 0.95976 1.20808 0.98742 0.90779 0.87061 1.44165 1.09645 1.49035 1.31835 1.20540 0.85350 0.95438 0.95410 1.19400 0.87813 1.38492 0.93663 0.92602 1.25731 0.98734 1.02629 0.97527 1.70213 1.20041 1.50643 1.17387 0.85309 0.79112 0.78430 0.77897 1.21152 1.21283 1.20045 1.20435 0.92098 0.98201 1.07432 0.91251 0.86376 0.92338 0.83383 0.83781 0.86446 0.89775 0.92536 0.88417 0.89427 0.90157 0.89266 0.87365 0.92152 0.96152 0.92172 0.91923 0.94913 0.97487 0.97031 0.94512 0.94109 0.84807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 9.81 113.37 1.11 1.36 16 2 O -0.34 -7.60 10.50 -92.49 -0.97 -8.57 16 3 C 0.11 2.66 6.69 22.51 0.15 2.81 16 4 C -0.21 -4.51 9.04 22.37 0.20 -4.31 16 5 C -0.09 -1.96 10.04 22.25 0.22 -1.74 16 6 C -0.14 -3.36 7.92 22.28 0.18 -3.18 16 7 C -0.04 -0.92 4.40 -19.88 -0.09 -1.01 16 8 C -0.06 -1.30 2.10 -12.29 -0.03 -1.33 16 9 H 0.12 2.00 7.13 -2.38 -0.02 1.98 16 10 C -0.14 -1.83 8.64 71.98 0.62 -1.21 16 11 C 0.51 14.31 6.94 87.65 0.61 14.92 16 12 O -0.58 -22.42 14.68 -3.04 -0.04 -22.46 16 13 N -0.61 -14.50 2.87 -846.77 -2.43 -16.93 16 14 C 0.06 0.84 8.80 127.77 1.12 1.97 16 15 C 0.13 3.50 5.41 86.38 0.47 3.97 16 16 C -0.13 -4.71 5.86 30.59 0.18 -4.53 16 17 C 0.15 6.47 5.64 86.38 0.49 6.96 16 18 N -0.62 -33.29 2.92 -726.94 -2.12 -35.41 16 19 C 0.18 9.06 8.98 127.77 1.15 10.21 16 20 C -0.26 -15.69 9.65 84.03 0.81 -14.87 16 21 H 0.06 3.38 7.86 -2.91 -0.02 3.36 16 22 C -0.05 -3.04 5.10 84.86 0.43 -2.61 16 23 N -0.94 -57.64 10.71 21.65 0.23 -57.41 16 24 Si 0.96 48.09 29.57 68.60 2.03 50.12 16 25 H -0.28 -13.94 7.11 99.48 0.71 -13.23 16 26 H -0.29 -14.00 7.11 99.48 0.71 -13.30 16 27 H -0.28 -13.44 7.11 99.48 0.71 -12.73 16 28 C -0.16 -4.08 9.61 22.36 0.21 -3.86 16 29 H 0.07 0.70 7.67 -2.39 -0.02 0.68 16 30 H 0.12 1.05 8.14 -2.39 -0.02 1.04 16 31 H 0.06 0.74 7.65 -2.39 -0.02 0.72 16 32 H 0.15 2.30 6.30 -2.91 -0.02 2.28 16 33 H 0.14 2.41 8.06 -2.91 -0.02 2.39 16 34 H 0.12 2.87 7.51 -2.91 -0.02 2.85 16 35 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 36 H 0.06 0.81 7.39 -2.39 -0.02 0.80 16 37 H 0.10 0.80 4.53 -2.39 -0.01 0.79 16 38 H 0.09 0.69 6.95 -2.39 -0.02 0.67 16 39 H 0.08 1.00 8.07 -2.39 -0.02 0.98 16 40 H 0.09 0.87 6.01 -2.39 -0.01 0.86 16 41 H 0.11 2.26 8.07 -2.39 -0.02 2.24 16 42 H 0.06 1.96 7.42 -2.39 -0.02 1.94 16 43 H 0.02 0.90 8.14 -2.39 -0.02 0.88 16 44 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 45 H 0.06 2.30 8.07 -2.38 -0.02 2.28 16 46 H 0.03 1.46 8.04 -2.39 -0.02 1.44 16 47 H 0.01 0.38 7.34 -2.39 -0.02 0.36 16 48 H 0.01 0.61 7.34 -2.39 -0.02 0.60 16 49 H 0.04 1.54 8.03 -2.39 -0.02 1.52 16 50 H 0.25 14.82 8.31 -92.70 -0.77 14.05 16 51 H 0.13 3.02 7.94 -2.91 -0.02 2.99 16 Total: -1.00 -81.24 405.50 5.44 -75.81 By element: Atomic # 1 Polarization: 10.42 SS G_CDS: 0.90 Total: 11.32 kcal Atomic # 6 Polarization: -4.31 SS G_CDS: 7.85 Total: 3.54 kcal Atomic # 7 Polarization: -105.43 SS G_CDS: -4.33 Total: -109.75 kcal Atomic # 8 Polarization: -30.01 SS G_CDS: -1.02 Total: -31.03 kcal Atomic # 14 Polarization: 48.09 SS G_CDS: 2.03 Total: 50.12 kcal Total: -81.24 5.44 -75.81 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733781783.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.174 kcal (2) G-P(sol) polarization free energy of solvation -81.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.806 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds