Wall clock time and date at job start Tue Mar 31 2020 17:52:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08994 * 109.47383 * 2 1 4 4 C 1.53002 * 109.46804 * 239.99645 * 2 1 3 5 5 C 1.53003 * 109.47169 * 180.02562 * 4 2 1 6 6 C 1.53005 * 109.46923 * 60.00395 * 5 4 2 7 7 C 1.53004 * 109.46830 * 300.00175 * 6 5 4 8 8 C 1.52994 * 109.47574 * 60.00030 * 7 6 5 9 9 C 1.52994 * 109.47477 * 179.97438 * 8 7 6 10 10 N 1.46494 * 109.47302 * 294.14203 * 9 8 7 11 11 C 1.36943 * 119.99885 * 183.54975 * 10 9 8 12 12 H 1.07994 * 120.00188 * 359.97438 * 11 10 9 13 13 C 1.38821 * 119.99760 * 179.97438 * 11 10 9 14 14 N 1.31614 * 119.99917 * 0.02562 * 13 11 10 15 15 Si 1.86791 * 119.99926 * 179.97438 * 13 11 10 16 16 H 1.48500 * 109.47064 * 90.00110 * 15 13 11 17 17 H 1.48500 * 109.47392 * 210.00195 * 15 13 11 18 18 H 1.48505 * 109.47238 * 330.00288 * 15 13 11 19 19 N 1.46502 * 109.46936 * 59.99627 * 8 7 6 20 20 C 1.34777 * 119.99572 * 171.16614 * 19 8 7 21 21 O 1.21275 * 120.00523 * 354.00209 * 20 19 8 22 22 C 1.50705 * 119.99691 * 174.00424 * 20 19 8 23 23 C 1.52995 * 109.47113 * 179.97438 * 22 20 19 24 24 C 1.50700 * 109.47288 * 179.97438 * 23 22 20 25 25 C 1.34515 * 125.78751 * 90.00031 * 24 23 22 26 26 C 1.41381 * 106.84131 * 179.97438 * 25 24 23 27 27 C 1.34513 * 106.83941 * 0.02562 * 26 25 24 28 28 O 1.34302 * 125.78988 * 269.69417 * 24 23 22 29 29 H 1.09004 * 109.46871 * 291.99170 * 1 2 3 30 30 H 1.08999 * 109.47028 * 51.98654 * 1 2 3 31 31 H 1.08992 * 109.47256 * 171.99218 * 1 2 3 32 32 H 1.08994 * 109.47441 * 300.00320 * 4 2 1 33 33 H 1.09002 * 109.46724 * 60.00640 * 4 2 1 34 34 H 1.08998 * 109.46986 * 300.00913 * 5 4 2 35 35 H 1.08999 * 109.47254 * 180.02562 * 5 4 2 36 36 H 1.08999 * 109.47262 * 180.02562 * 6 5 4 37 37 H 1.09001 * 109.46974 * 59.99679 * 6 5 4 38 38 H 1.09001 * 109.46936 * 299.99527 * 7 6 5 39 39 H 1.09003 * 109.46588 * 180.02562 * 7 6 5 40 40 H 1.09006 * 109.46672 * 54.14041 * 9 8 7 41 41 H 1.09000 * 109.47703 * 174.13564 * 9 8 7 42 42 H 0.96997 * 120.00252 * 3.54641 * 10 9 8 43 43 H 0.97003 * 119.99988 * 179.97438 * 14 13 11 44 44 H 0.96999 * 120.00014 * 351.16721 * 19 8 7 45 45 H 1.09000 * 109.47021 * 299.99582 * 22 20 19 46 46 H 1.09000 * 109.47257 * 59.99668 * 22 20 19 47 47 H 1.09001 * 109.47366 * 299.99523 * 23 22 20 48 48 H 1.09000 * 109.47292 * 59.99737 * 23 22 20 49 49 H 1.08002 * 126.58066 * 0.03363 * 25 24 23 50 50 H 1.08004 * 126.58126 * 179.97438 * 26 25 24 51 51 H 1.08005 * 125.78924 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7214 -1.2492 5 6 3.5700 -0.7220 -1.2490 6 6 4.0795 -1.4436 0.0003 7 6 3.5694 -0.7223 1.2495 8 6 2.0395 -0.7217 1.2493 9 6 1.5295 -0.0010 2.4988 10 7 1.8988 -0.7689 3.6904 11 6 1.4842 -0.3542 4.9279 12 1 0.8854 0.5393 5.0254 13 6 1.8337 -1.0822 6.0570 14 7 2.5638 -2.1707 5.9382 15 14 1.2688 -0.5161 7.7451 16 1 -0.0456 -1.1316 8.0593 17 1 2.2656 -0.9297 8.7652 18 1 1.1372 0.9631 7.7528 19 7 1.5506 -2.1027 1.2489 20 6 0.2384 -2.3530 1.4279 21 8 -0.5207 -1.4464 1.6973 22 6 -0.2855 -3.7597 1.2934 23 6 -1.7947 -3.7679 1.5441 24 6 -2.3188 -5.1744 1.4089 25 6 -2.4148 -6.0768 2.4018 26 6 -2.9550 -7.2538 1.8347 27 6 -3.1563 -7.0004 0.5291 28 8 -2.7745 -5.7375 0.2780 29 1 -0.3633 0.3849 0.9529 30 1 -0.3633 0.6329 -0.8097 31 1 -0.3633 -1.0176 -0.1431 32 1 1.6766 -1.7489 -1.2492 33 1 1.6766 -0.2074 -2.1392 34 1 3.9337 0.3056 -1.2487 35 1 3.9333 -1.2355 -2.1392 36 1 5.1695 -1.4437 0.0007 37 1 3.7156 -2.4711 0.0000 38 1 3.9333 0.3052 1.2497 39 1 3.9328 -1.2362 2.1395 40 1 1.9764 0.9918 2.5534 41 1 0.4447 0.0914 2.4477 42 1 2.4369 -1.5712 3.6029 43 1 2.8084 -2.6793 6.7272 44 1 2.1713 -2.8369 1.1199 45 1 -0.0817 -4.1287 0.2882 46 1 0.2072 -4.4022 2.0231 47 1 -1.9981 -3.3991 2.5494 48 1 -2.2877 -3.1252 0.8146 49 1 -2.1341 -5.9301 3.4343 50 1 -3.1650 -8.1792 2.3506 51 1 -3.5605 -7.6936 -0.1939 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753529537.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:52:30 Heat of formation + Delta-G solvation = -9.945070 kcal Electronic energy + Delta-G solvation = -30768.702190 eV Core-core repulsion = 26863.076210 eV Total energy + Delta-G solvation = -3905.625979 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.54240 -40.70347 -37.83974 -34.63299 -33.91231 -33.11590 -32.79554 -32.30040 -31.19380 -29.48360 -28.51990 -26.32772 -24.94418 -24.44231 -22.89534 -21.73408 -21.14902 -20.80065 -20.36943 -20.04845 -18.71822 -17.48452 -17.12283 -16.71428 -16.01179 -15.79380 -15.27500 -14.86599 -14.44960 -14.25621 -14.18386 -13.85300 -13.59743 -13.32206 -13.17053 -12.98445 -12.80765 -12.66710 -12.58577 -12.38810 -12.00982 -11.97727 -11.76748 -11.63249 -11.38076 -11.30041 -11.16443 -10.91336 -10.78304 -10.73170 -10.66725 -10.28375 -10.06454 -9.93258 -9.91429 -9.60340 -9.54377 -9.12183 -8.62384 -8.41033 -8.20597 -6.72544 -5.66895 -2.91290 1.72412 2.62550 2.98224 3.21030 3.49430 3.54867 3.56029 3.68059 4.67806 4.68701 4.87870 4.90227 4.92512 5.01015 5.02436 5.08728 5.23151 5.28792 5.30561 5.37379 5.56486 5.64517 5.67671 5.69602 5.70881 5.76813 5.82455 5.84345 5.85033 6.02717 6.03875 6.07637 6.10688 6.16270 6.22303 6.26762 6.30716 6.33012 6.41884 6.45838 6.52563 6.57294 6.71499 6.73774 6.85634 7.15794 7.17029 7.32208 7.81532 8.06654 8.53404 8.82137 9.64633 10.24899 10.60308 11.56577 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.007215 B = 0.004836 C = 0.003233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3879.882221 B = 5788.698588 C = 8659.289978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.092 4.092 3 H 0.071 0.929 4 C -0.110 4.110 5 C -0.118 4.118 6 C -0.119 4.119 7 C -0.120 4.120 8 C 0.181 3.819 9 C 0.133 3.867 10 N -0.722 5.722 11 C -0.222 4.222 12 H 0.067 0.933 13 C -0.018 4.018 14 N -0.938 5.938 15 Si 0.902 3.098 16 H -0.292 1.292 17 H -0.294 1.294 18 H -0.284 1.284 19 N -0.710 5.710 20 C 0.518 3.482 21 O -0.514 6.514 22 C -0.137 4.137 23 C -0.023 4.023 24 C -0.003 4.003 25 C -0.211 4.211 26 C -0.211 4.211 27 C -0.053 4.053 28 O -0.178 6.178 29 H 0.083 0.917 30 H 0.025 0.975 31 H 0.059 0.941 32 H 0.060 0.940 33 H 0.055 0.945 34 H 0.059 0.941 35 H 0.055 0.945 36 H 0.061 0.939 37 H 0.058 0.942 38 H 0.073 0.927 39 H 0.079 0.921 40 H 0.011 0.989 41 H 0.067 0.933 42 H 0.380 0.620 43 H 0.251 0.749 44 H 0.393 0.607 45 H 0.087 0.913 46 H 0.096 0.904 47 H 0.105 0.895 48 H 0.086 0.914 49 H 0.149 0.851 50 H 0.146 0.854 51 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.600 -6.231 -17.001 18.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.112 4.112 3 H 0.089 0.911 4 C -0.147 4.147 5 C -0.156 4.156 6 C -0.157 4.157 7 C -0.158 4.158 8 C 0.095 3.905 9 C 0.005 3.995 10 N -0.366 5.366 11 C -0.354 4.354 12 H 0.085 0.915 13 C -0.213 4.213 14 N -0.588 5.588 15 Si 0.734 3.266 16 H -0.220 1.220 17 H -0.220 1.220 18 H -0.209 1.209 19 N -0.362 5.362 20 C 0.304 3.696 21 O -0.390 6.390 22 C -0.177 4.177 23 C -0.060 4.060 24 C -0.053 4.053 25 C -0.231 4.231 26 C -0.231 4.231 27 C -0.121 4.121 28 O -0.074 6.074 29 H 0.102 0.898 30 H 0.044 0.956 31 H 0.078 0.922 32 H 0.079 0.921 33 H 0.074 0.926 34 H 0.078 0.922 35 H 0.074 0.926 36 H 0.079 0.921 37 H 0.077 0.923 38 H 0.092 0.908 39 H 0.098 0.902 40 H 0.028 0.972 41 H 0.085 0.915 42 H 0.214 0.786 43 H 0.061 0.939 44 H 0.227 0.773 45 H 0.105 0.895 46 H 0.114 0.886 47 H 0.124 0.876 48 H 0.105 0.895 49 H 0.167 0.833 50 H 0.163 0.837 51 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges -4.238 -5.300 -16.966 18.272 hybrid contribution 0.284 -0.737 1.172 1.413 sum -3.953 -6.037 -15.794 17.365 Atomic orbital electron populations 1.22398 0.93905 1.01803 1.01816 1.21483 0.96882 0.98978 0.93867 0.91050 1.21550 0.95041 1.00743 0.97399 1.21544 0.95980 1.00572 0.97494 1.21558 1.00092 0.99245 0.94778 1.21790 0.93930 1.01898 0.98200 1.20553 0.92997 0.81623 0.95294 1.21327 1.00174 0.92900 0.85071 1.42178 1.63265 1.30229 1.00943 1.19227 1.25398 1.06559 0.84171 0.91526 1.24632 1.01303 0.97837 0.97499 1.69644 1.42828 1.18196 1.28174 0.86239 0.77698 0.77839 0.84778 1.21983 1.22015 1.20941 1.45810 1.07964 1.08214 1.74208 1.20029 0.82537 0.90084 0.76933 1.90699 1.57353 1.45493 1.45494 1.21641 0.96046 0.96143 1.03895 1.19864 0.93711 0.87101 1.05334 1.22604 1.02033 0.96936 0.83747 1.21703 1.06962 0.93586 1.00809 1.21841 1.06218 1.00294 0.94711 1.23955 1.05500 0.84700 0.97901 1.84015 1.62955 1.24909 1.35557 0.89819 0.95567 0.92215 0.92124 0.92625 0.92181 0.92588 0.92075 0.92291 0.90837 0.90216 0.97158 0.91512 0.78575 0.93877 0.77264 0.89486 0.88557 0.87621 0.89530 0.83274 0.83669 0.78416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.14 7.29 37.16 0.27 -1.87 16 2 C -0.09 -1.27 2.07 -90.62 -0.19 -1.46 16 3 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 4 C -0.11 -1.26 5.04 -26.73 -0.13 -1.39 16 5 C -0.12 -1.23 5.92 -26.73 -0.16 -1.39 16 6 C -0.12 -1.34 5.75 -26.73 -0.15 -1.50 16 7 C -0.12 -1.74 4.70 -26.73 -0.13 -1.87 16 8 C 0.18 2.84 0.32 -131.82 -0.04 2.80 16 9 C 0.13 2.76 4.44 -4.05 -0.02 2.74 16 10 N -0.72 -18.05 5.17 -59.91 -0.31 -18.36 16 11 C -0.22 -6.32 9.99 -15.05 -0.15 -6.47 16 12 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 13 C -0.02 -0.52 5.50 -17.43 -0.10 -0.61 16 14 N -0.94 -28.23 13.06 55.49 0.72 -27.50 16 15 Si 0.90 23.00 29.55 -169.99 -5.02 17.97 16 16 H -0.29 -7.47 7.11 56.52 0.40 -7.07 16 17 H -0.29 -7.51 7.11 56.52 0.40 -7.11 16 18 H -0.28 -7.08 7.11 56.52 0.40 -6.68 16 19 N -0.71 -10.46 3.58 -47.61 -0.17 -10.63 16 20 C 0.52 8.20 5.88 -10.98 -0.06 8.14 16 21 O -0.51 -9.62 9.44 5.56 0.05 -9.57 16 22 C -0.14 -1.78 5.68 -27.88 -0.16 -1.94 16 23 C -0.02 -0.30 5.04 -27.89 -0.14 -0.44 16 24 C 0.00 -0.04 6.57 -35.62 -0.23 -0.28 16 25 C -0.21 -2.75 10.81 -39.70 -0.43 -3.17 16 26 C -0.21 -2.36 10.91 -39.70 -0.43 -2.79 16 27 C -0.05 -0.55 12.09 29.42 0.36 -0.19 16 28 O -0.18 -2.27 10.65 5.70 0.06 -2.21 16 29 H 0.08 1.48 5.04 -51.93 -0.26 1.22 16 30 H 0.03 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.06 0.92 5.32 -51.93 -0.28 0.64 16 32 H 0.06 0.70 7.60 -51.93 -0.39 0.31 16 33 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 36 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.06 0.63 6.70 -51.93 -0.35 0.28 16 38 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 39 H 0.08 1.35 7.17 -51.93 -0.37 0.98 16 40 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 16 41 H 0.07 1.51 4.25 -51.93 -0.22 1.29 16 42 H 0.38 9.80 6.49 -40.82 -0.27 9.54 16 43 H 0.25 7.39 8.31 -40.82 -0.34 7.05 16 44 H 0.39 5.07 7.07 -40.82 -0.29 4.78 16 45 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 46 H 0.10 1.27 8.14 -51.93 -0.42 0.85 16 47 H 0.11 1.56 8.10 -51.93 -0.42 1.14 16 48 H 0.09 1.14 8.10 -51.93 -0.42 0.72 16 49 H 0.15 1.88 8.06 -52.49 -0.42 1.46 16 50 H 0.15 1.29 8.06 -52.48 -0.42 0.87 16 51 H 0.20 1.23 8.06 -52.48 -0.42 0.81 16 LS Contribution 388.35 15.07 5.85 5.85 Total: -1.00 -32.40 388.35 -9.02 -41.43 By element: Atomic # 1 Polarization: 23.03 SS G_CDS: -8.31 Total: 14.72 kcal Atomic # 6 Polarization: -9.79 SS G_CDS: -1.90 Total: -11.69 kcal Atomic # 7 Polarization: -56.74 SS G_CDS: 0.24 Total: -56.50 kcal Atomic # 8 Polarization: -11.89 SS G_CDS: 0.11 Total: -11.78 kcal Atomic # 14 Polarization: 23.00 SS G_CDS: -5.02 Total: 17.97 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -32.40 -9.02 -41.43 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753529537.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.481 kcal (2) G-P(sol) polarization free energy of solvation -32.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.426 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds