Wall clock time and date at job start Tue Mar 31 2020 17:52:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08994 * 109.47383 * 2 1 4 4 C 1.53002 * 109.46804 * 239.99645 * 2 1 3 5 5 C 1.53003 * 109.47169 * 180.02562 * 4 2 1 6 6 C 1.53005 * 109.46923 * 60.00395 * 5 4 2 7 7 C 1.53004 * 109.46830 * 300.00175 * 6 5 4 8 8 C 1.52994 * 109.47574 * 60.00030 * 7 6 5 9 9 C 1.52994 * 109.47477 * 179.97438 * 8 7 6 10 10 N 1.46494 * 109.47302 * 294.14203 * 9 8 7 11 11 C 1.36943 * 119.99885 * 183.54975 * 10 9 8 12 12 H 1.07994 * 120.00188 * 359.97438 * 11 10 9 13 13 C 1.38821 * 119.99760 * 179.97438 * 11 10 9 14 14 N 1.31614 * 119.99917 * 0.02562 * 13 11 10 15 15 Si 1.86791 * 119.99926 * 179.97438 * 13 11 10 16 16 H 1.48500 * 109.47064 * 90.00110 * 15 13 11 17 17 H 1.48500 * 109.47392 * 210.00195 * 15 13 11 18 18 H 1.48505 * 109.47238 * 330.00288 * 15 13 11 19 19 N 1.46502 * 109.46936 * 59.99627 * 8 7 6 20 20 C 1.34777 * 119.99572 * 171.16614 * 19 8 7 21 21 O 1.21275 * 120.00523 * 354.00209 * 20 19 8 22 22 C 1.50705 * 119.99691 * 174.00424 * 20 19 8 23 23 C 1.52995 * 109.47113 * 179.97438 * 22 20 19 24 24 C 1.50700 * 109.47288 * 179.97438 * 23 22 20 25 25 C 1.34515 * 125.78751 * 90.00031 * 24 23 22 26 26 C 1.41381 * 106.84131 * 179.97438 * 25 24 23 27 27 C 1.34513 * 106.83941 * 0.02562 * 26 25 24 28 28 O 1.34302 * 125.78988 * 269.69417 * 24 23 22 29 29 H 1.09004 * 109.46871 * 291.99170 * 1 2 3 30 30 H 1.08999 * 109.47028 * 51.98654 * 1 2 3 31 31 H 1.08992 * 109.47256 * 171.99218 * 1 2 3 32 32 H 1.08994 * 109.47441 * 300.00320 * 4 2 1 33 33 H 1.09002 * 109.46724 * 60.00640 * 4 2 1 34 34 H 1.08998 * 109.46986 * 300.00913 * 5 4 2 35 35 H 1.08999 * 109.47254 * 180.02562 * 5 4 2 36 36 H 1.08999 * 109.47262 * 180.02562 * 6 5 4 37 37 H 1.09001 * 109.46974 * 59.99679 * 6 5 4 38 38 H 1.09001 * 109.46936 * 299.99527 * 7 6 5 39 39 H 1.09003 * 109.46588 * 180.02562 * 7 6 5 40 40 H 1.09006 * 109.46672 * 54.14041 * 9 8 7 41 41 H 1.09000 * 109.47703 * 174.13564 * 9 8 7 42 42 H 0.96997 * 120.00252 * 3.54641 * 10 9 8 43 43 H 0.97003 * 119.99988 * 179.97438 * 14 13 11 44 44 H 0.96999 * 120.00014 * 351.16721 * 19 8 7 45 45 H 1.09000 * 109.47021 * 299.99582 * 22 20 19 46 46 H 1.09000 * 109.47257 * 59.99668 * 22 20 19 47 47 H 1.09001 * 109.47366 * 299.99523 * 23 22 20 48 48 H 1.09000 * 109.47292 * 59.99737 * 23 22 20 49 49 H 1.08002 * 126.58066 * 0.03363 * 25 24 23 50 50 H 1.08004 * 126.58126 * 179.97438 * 26 25 24 51 51 H 1.08005 * 125.78924 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7214 -1.2492 5 6 3.5700 -0.7220 -1.2490 6 6 4.0795 -1.4436 0.0003 7 6 3.5694 -0.7223 1.2495 8 6 2.0395 -0.7217 1.2493 9 6 1.5295 -0.0010 2.4988 10 7 1.8988 -0.7689 3.6904 11 6 1.4842 -0.3542 4.9279 12 1 0.8854 0.5393 5.0254 13 6 1.8337 -1.0822 6.0570 14 7 2.5638 -2.1707 5.9382 15 14 1.2688 -0.5161 7.7451 16 1 -0.0456 -1.1316 8.0593 17 1 2.2656 -0.9297 8.7652 18 1 1.1372 0.9631 7.7528 19 7 1.5506 -2.1027 1.2489 20 6 0.2384 -2.3530 1.4279 21 8 -0.5207 -1.4464 1.6973 22 6 -0.2855 -3.7597 1.2934 23 6 -1.7947 -3.7679 1.5441 24 6 -2.3188 -5.1744 1.4089 25 6 -2.4148 -6.0768 2.4018 26 6 -2.9550 -7.2538 1.8347 27 6 -3.1563 -7.0004 0.5291 28 8 -2.7745 -5.7375 0.2780 29 1 -0.3633 0.3849 0.9529 30 1 -0.3633 0.6329 -0.8097 31 1 -0.3633 -1.0176 -0.1431 32 1 1.6766 -1.7489 -1.2492 33 1 1.6766 -0.2074 -2.1392 34 1 3.9337 0.3056 -1.2487 35 1 3.9333 -1.2355 -2.1392 36 1 5.1695 -1.4437 0.0007 37 1 3.7156 -2.4711 0.0000 38 1 3.9333 0.3052 1.2497 39 1 3.9328 -1.2362 2.1395 40 1 1.9764 0.9918 2.5534 41 1 0.4447 0.0914 2.4477 42 1 2.4369 -1.5712 3.6029 43 1 2.8084 -2.6793 6.7272 44 1 2.1713 -2.8369 1.1199 45 1 -0.0817 -4.1287 0.2882 46 1 0.2072 -4.4022 2.0231 47 1 -1.9981 -3.3991 2.5494 48 1 -2.2877 -3.1252 0.8146 49 1 -2.1341 -5.9301 3.4343 50 1 -3.1650 -8.1792 2.3506 51 1 -3.5605 -7.6936 -0.1939 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753529537.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:52:29 Heat of formation + Delta-G solvation = -28.935725 kcal Electronic energy + Delta-G solvation = -30769.525686 eV Core-core repulsion = 26863.076210 eV Total energy + Delta-G solvation = -3906.449476 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -43.46302 -41.96544 -39.04331 -36.36506 -35.04729 -34.55297 -33.77404 -33.39439 -32.96225 -30.96970 -29.52700 -27.70927 -26.49270 -25.50718 -24.68163 -22.64449 -22.37961 -21.96784 -21.44675 -21.09445 -19.98841 -19.15757 -18.51538 -17.77001 -17.22733 -16.89262 -16.76125 -16.17199 -15.95830 -15.50143 -15.26631 -15.19335 -14.82527 -14.74607 -14.68402 -14.35364 -13.94124 -13.73913 -13.69340 -13.48168 -13.37944 -13.11039 -13.00522 -12.90785 -12.80416 -12.67823 -12.61284 -12.45254 -12.31664 -12.07963 -11.95595 -11.81153 -11.71278 -11.30090 -11.02322 -10.95758 -10.84279 -10.72666 -10.25662 -9.52253 -9.35064 -8.83145 -7.91618 -5.15173 0.80747 1.44022 1.45504 1.53445 1.71244 1.93561 2.07253 2.48639 2.58153 3.41556 3.68578 3.76935 3.82996 3.87991 3.95303 4.08711 4.14813 4.17057 4.22194 4.23942 4.36392 4.42025 4.54245 4.57695 4.60434 4.67122 4.74085 4.81044 4.82064 4.95807 4.97596 4.98458 5.01625 5.06925 5.09756 5.17784 5.24109 5.25965 5.27492 5.32321 5.39548 5.43315 5.48456 5.52980 5.59751 5.62464 5.79466 5.89947 6.23701 6.31975 6.84094 7.38932 7.57895 8.17300 8.44424 9.31537 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.007215 B = 0.004836 C = 0.003233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3879.882221 B = 5788.698588 C = 8659.289978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.087 4.087 3 H 0.071 0.929 4 C -0.103 4.103 5 C -0.113 4.113 6 C -0.112 4.112 7 C -0.115 4.115 8 C 0.189 3.811 9 C 0.132 3.868 10 N -0.725 5.725 11 C -0.233 4.233 12 H 0.059 0.941 13 C -0.070 4.070 14 N -0.964 5.964 15 Si 0.963 3.037 16 H -0.292 1.292 17 H -0.292 1.292 18 H -0.276 1.276 19 N -0.703 5.703 20 C 0.510 3.490 21 O -0.547 6.547 22 C -0.126 4.126 23 C -0.015 4.015 24 C -0.019 4.019 25 C -0.227 4.227 26 C -0.227 4.227 27 C -0.040 4.040 28 O -0.188 6.188 29 H 0.050 0.950 30 H 0.040 0.960 31 H 0.056 0.944 32 H 0.063 0.937 33 H 0.069 0.931 34 H 0.062 0.938 35 H 0.079 0.921 36 H 0.073 0.927 37 H 0.068 0.932 38 H 0.070 0.930 39 H 0.050 0.950 40 H 0.000 1.000 41 H 0.050 0.950 42 H 0.375 0.625 43 H 0.249 0.751 44 H 0.404 0.596 45 H 0.115 0.885 46 H 0.094 0.906 47 H 0.081 0.919 48 H 0.085 0.915 49 H 0.143 0.857 50 H 0.167 0.833 51 H 0.242 0.758 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.356 -7.458 -19.266 20.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.107 4.107 3 H 0.090 0.910 4 C -0.140 4.140 5 C -0.151 4.151 6 C -0.150 4.150 7 C -0.153 4.153 8 C 0.103 3.897 9 C 0.005 3.995 10 N -0.367 5.367 11 C -0.366 4.366 12 H 0.077 0.923 13 C -0.262 4.262 14 N -0.616 5.616 15 Si 0.793 3.207 16 H -0.220 1.220 17 H -0.218 1.218 18 H -0.201 1.201 19 N -0.356 5.356 20 C 0.298 3.702 21 O -0.426 6.426 22 C -0.166 4.166 23 C -0.052 4.052 24 C -0.069 4.069 25 C -0.246 4.246 26 C -0.246 4.246 27 C -0.107 4.107 28 O -0.085 6.085 29 H 0.068 0.932 30 H 0.059 0.941 31 H 0.074 0.926 32 H 0.081 0.919 33 H 0.088 0.912 34 H 0.081 0.919 35 H 0.098 0.902 36 H 0.092 0.908 37 H 0.086 0.914 38 H 0.089 0.911 39 H 0.068 0.932 40 H 0.018 0.982 41 H 0.068 0.932 42 H 0.208 0.792 43 H 0.058 0.942 44 H 0.240 0.760 45 H 0.134 0.866 46 H 0.112 0.888 47 H 0.100 0.900 48 H 0.103 0.897 49 H 0.161 0.839 50 H 0.184 0.816 51 H 0.258 0.742 Dipole moment (debyes) X Y Z Total from point charges -3.983 -6.521 -19.257 20.717 hybrid contribution 0.142 -0.340 1.882 1.918 sum -3.841 -6.860 -17.375 19.071 Atomic orbital electron populations 1.22243 0.94826 1.01615 1.00441 1.21438 0.95960 0.99147 0.94170 0.91038 1.21503 0.95906 1.00539 0.96090 1.21522 0.94899 1.00953 0.97676 1.21529 1.00844 0.99302 0.93303 1.21712 0.92733 1.01926 0.98962 1.20400 0.93828 0.81833 0.93680 1.21403 0.99188 0.92737 0.86148 1.42231 1.62923 1.30285 1.01301 1.19502 1.24923 1.06284 0.85851 0.92263 1.25321 1.01952 0.98234 1.00682 1.69773 1.43939 1.19107 1.28742 0.85288 0.76984 0.77733 0.80690 1.21967 1.21828 1.20092 1.45768 1.07962 1.08210 1.73637 1.20574 0.82566 0.90931 0.76176 1.90707 1.58165 1.46742 1.46959 1.21580 0.95519 0.94052 1.05419 1.19659 0.94088 0.87642 1.03854 1.22420 1.03416 0.96796 0.84282 1.21892 1.07284 0.94760 1.00686 1.22142 1.06577 1.00498 0.95341 1.24814 1.03405 0.83939 0.98537 1.84009 1.63135 1.26067 1.35269 0.93159 0.94116 0.92562 0.91872 0.91199 0.91907 0.90244 0.90797 0.91368 0.91128 0.93157 0.98186 0.93247 0.79162 0.94219 0.75966 0.86640 0.88779 0.90039 0.89652 0.83923 0.81583 0.74220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.04 7.29 71.98 0.52 -3.52 16 2 C -0.09 -2.34 2.07 -10.79 -0.02 -2.36 16 3 H 0.07 1.91 8.14 -2.39 -0.02 1.90 16 4 C -0.10 -2.06 5.04 30.60 0.15 -1.91 16 5 C -0.11 -1.97 5.92 30.60 0.18 -1.78 16 6 C -0.11 -2.26 5.75 30.60 0.18 -2.08 16 7 C -0.12 -3.29 4.70 30.59 0.14 -3.15 16 8 C 0.19 5.95 0.32 3.60 0.00 5.95 16 9 C 0.13 5.72 4.44 86.38 0.38 6.10 16 10 N -0.72 -37.57 5.17 -343.46 -1.77 -39.34 16 11 C -0.23 -13.67 9.99 84.03 0.84 -12.83 16 12 H 0.06 3.49 7.83 -2.91 -0.02 3.47 16 13 C -0.07 -4.11 5.50 84.86 0.47 -3.64 16 14 N -0.96 -59.06 13.06 21.65 0.28 -58.77 16 15 Si 0.96 48.07 29.55 68.60 2.03 50.10 16 16 H -0.29 -14.51 7.11 99.48 0.71 -13.80 16 17 H -0.29 -14.41 7.11 99.48 0.71 -13.70 16 18 H -0.28 -13.27 7.11 99.48 0.71 -12.56 16 19 N -0.70 -20.65 3.58 -422.93 -1.51 -22.17 16 20 C 0.51 16.42 5.88 87.66 0.52 16.93 16 21 O -0.55 -21.38 9.44 -3.02 -0.03 -21.41 16 22 C -0.13 -3.25 5.68 29.85 0.17 -3.08 16 23 C -0.01 -0.40 5.04 29.85 0.15 -0.25 16 24 C -0.02 -0.51 6.57 24.83 0.16 -0.34 16 25 C -0.23 -5.89 10.81 22.19 0.24 -5.65 16 26 C -0.23 -4.67 10.91 22.19 0.24 -4.43 16 27 C -0.04 -0.73 12.09 66.97 0.81 0.08 16 28 O -0.19 -4.51 10.65 -2.51 -0.03 -4.54 16 29 H 0.05 1.86 5.04 -2.38 -0.01 1.85 16 30 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 31 H 0.06 1.72 5.32 -2.39 -0.01 1.70 16 32 H 0.06 1.26 7.60 -2.39 -0.02 1.24 16 33 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 34 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 35 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 36 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 37 H 0.07 1.26 6.70 -2.39 -0.02 1.24 16 38 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 39 H 0.05 1.73 7.17 -2.39 -0.02 1.72 16 40 H 0.00 0.02 8.14 -2.38 -0.02 0.00 16 41 H 0.05 2.37 4.25 -2.39 -0.01 2.36 16 42 H 0.38 20.01 6.49 -92.71 -0.60 19.40 16 43 H 0.25 14.83 8.31 -92.71 -0.77 14.06 16 44 H 0.40 10.06 7.07 -92.71 -0.66 9.40 16 45 H 0.12 2.32 8.14 -2.39 -0.02 2.30 16 46 H 0.09 2.49 8.14 -2.39 -0.02 2.47 16 47 H 0.08 2.60 8.10 -2.39 -0.02 2.58 16 48 H 0.08 2.32 8.10 -2.39 -0.02 2.30 16 49 H 0.14 3.75 8.06 -2.91 -0.02 3.73 16 50 H 0.17 2.59 8.06 -2.91 -0.02 2.57 16 51 H 0.24 1.98 8.06 -2.91 -0.02 1.95 16 Total: -1.00 -71.92 388.35 3.79 -68.13 By element: Atomic # 1 Polarization: 44.27 SS G_CDS: -0.32 Total: 43.95 kcal Atomic # 6 Polarization: -21.09 SS G_CDS: 5.14 Total: -15.95 kcal Atomic # 7 Polarization: -117.28 SS G_CDS: -3.00 Total: -120.28 kcal Atomic # 8 Polarization: -25.89 SS G_CDS: -0.06 Total: -25.95 kcal Atomic # 14 Polarization: 48.07 SS G_CDS: 2.03 Total: 50.10 kcal Total: -71.92 3.79 -68.13 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753529537.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.193 kcal (2) G-P(sol) polarization free energy of solvation -71.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.129 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds