Wall clock time and date at job start Tue Mar 31 2020 20:27:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 109.47009 * 2 1 4 4 C 1.52991 * 109.46983 * 239.99854 * 2 1 3 5 5 C 1.50697 * 109.47432 * 64.99833 * 4 2 1 6 6 C 1.34522 * 125.78760 * 90.00054 * 5 4 2 7 7 C 1.41383 * 106.83671 * 180.02562 * 6 5 4 8 8 C 1.34513 * 106.84514 * 0.22414 * 7 6 5 9 9 O 1.34297 * 125.79392 * 270.02754 * 5 4 2 10 10 C 1.50702 * 109.47327 * 119.99746 * 2 1 3 11 11 O 1.21279 * 119.99925 * 94.71367 * 10 2 1 12 12 N 1.34775 * 120.00110 * 274.72407 * 10 2 1 13 13 C 1.46927 * 120.63309 * 5.21134 * 12 10 2 14 14 C 1.53192 * 108.77753 * 126.37266 * 13 12 10 15 15 C 1.53046 * 109.30766 * 54.63560 * 14 13 12 16 16 C 1.53037 * 109.54006 * 298.63610 * 15 14 13 17 17 H 1.08999 * 109.49835 * 301.41491 * 16 15 14 18 18 C 1.53000 * 109.49330 * 181.34584 * 16 15 14 19 19 C 1.53004 * 109.47122 * 65.00542 * 18 16 15 20 20 N 1.46497 * 109.47457 * 179.97438 * 19 18 16 21 21 C 1.36936 * 120.00232 * 179.97438 * 20 19 18 22 22 H 1.08001 * 119.99633 * 359.97438 * 21 20 19 23 23 C 1.38810 * 120.00200 * 179.97438 * 21 20 19 24 24 N 1.31620 * 119.99737 * 359.97438 * 23 21 20 25 25 Si 1.86797 * 120.00261 * 180.02562 * 23 21 20 26 26 H 1.48496 * 109.47215 * 89.99612 * 25 23 21 27 27 H 1.48497 * 109.47323 * 209.99818 * 25 23 21 28 28 H 1.48500 * 109.46935 * 330.00109 * 25 23 21 29 29 C 1.46926 * 120.63029 * 184.94407 * 12 10 2 30 30 H 1.09008 * 109.46923 * 294.92085 * 1 2 3 31 31 H 1.08998 * 109.47262 * 54.91681 * 1 2 3 32 32 H 1.09003 * 109.47223 * 174.92240 * 1 2 3 33 33 H 1.09004 * 109.47140 * 304.99632 * 4 2 1 34 34 H 1.09000 * 109.47356 * 185.00014 * 4 2 1 35 35 H 1.07996 * 126.57836 * 0.05192 * 6 5 4 36 36 H 1.08007 * 126.57424 * 179.97438 * 7 6 5 37 37 H 1.08000 * 125.78792 * 179.77615 * 8 7 6 38 38 H 1.08997 * 109.58719 * 246.16415 * 13 12 10 39 39 H 1.09009 * 109.58309 * 6.44656 * 13 12 10 40 40 H 1.08997 * 109.50015 * 174.59009 * 14 13 12 41 41 H 1.09003 * 109.49575 * 294.65917 * 14 13 12 42 42 H 1.09006 * 109.45684 * 58.66143 * 15 14 13 43 43 H 1.08996 * 109.45651 * 178.62412 * 15 14 13 44 44 H 1.09000 * 109.46747 * 184.99677 * 18 16 15 45 45 H 1.08993 * 109.47694 * 304.99990 * 18 16 15 46 46 H 1.09004 * 109.46752 * 299.99693 * 19 18 16 47 47 H 1.09000 * 109.46976 * 59.99453 * 19 18 16 48 48 H 0.96999 * 119.99483 * 359.97438 * 20 19 18 49 49 H 0.97004 * 120.00282 * 179.97438 * 24 23 21 50 50 H 1.08997 * 109.58716 * 353.40737 * 29 12 10 51 51 H 1.08995 * 109.59181 * 113.83920 * 29 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.6413 0.0569 -2.4765 6 6 2.3656 1.0274 -3.0624 7 6 1.6192 1.4809 -4.1742 8 6 0.4813 0.7640 -4.1984 9 8 0.5025 -0.1004 -3.1707 10 6 2.0324 -0.7104 1.2305 11 8 2.3159 -1.8883 1.1773 12 7 2.1664 -0.0366 2.3900 13 6 1.7206 1.3590 2.5008 14 6 0.7670 1.4788 3.6937 15 6 1.4558 0.9374 4.9486 16 6 1.7956 -0.5413 4.7485 17 1 0.8826 -1.0996 4.5416 18 6 2.4538 -1.0900 6.0160 19 6 1.4472 -1.0587 7.1678 20 7 2.0772 -1.5847 8.3814 21 6 1.3639 -1.6538 9.5483 22 1 0.3371 -1.3201 9.5740 23 6 1.9607 -2.1527 10.6980 24 7 3.2120 -2.5598 10.6664 25 14 0.9876 -2.2476 12.2896 26 1 0.3026 -3.5625 12.3733 27 1 1.9098 -2.0955 13.4435 28 1 -0.0235 -1.1602 12.3172 29 6 2.7558 -0.6856 3.5691 30 1 -0.3633 0.4331 0.9321 31 1 -0.3634 0.5906 -0.8409 32 1 -0.3634 -1.0236 -0.0910 33 1 1.6054 -1.7198 -1.2950 34 1 3.1263 -0.7995 -1.2056 35 1 3.3319 1.3901 -2.7447 36 1 1.9058 2.2572 -4.8684 37 1 -0.3133 0.8647 -4.9229 38 1 2.5833 2.0069 2.6561 39 1 1.2040 1.6512 1.5865 40 1 0.5042 2.5256 3.8458 41 1 -0.1365 0.9018 3.4965 42 1 2.3720 1.4992 5.1309 43 1 0.7883 1.0440 5.8037 44 1 2.7758 -2.1168 5.8427 45 1 3.3177 -0.4766 6.2716 46 1 1.1251 -0.0319 7.3411 47 1 0.5833 -1.6723 6.9121 48 1 2.9995 -1.8840 8.3582 49 1 3.6292 -2.9080 11.4699 50 1 2.9197 -1.7428 3.3605 51 1 3.7045 -0.2078 3.8133 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753557954.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:27:27 Heat of formation + Delta-G solvation = -29.833741 kcal Electronic energy + Delta-G solvation = -28614.619231 eV Core-core repulsion = 24708.130815 eV Total energy + Delta-G solvation = -3906.488417 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.92690 -40.62001 -38.11212 -35.52042 -35.28183 -33.49165 -33.23686 -32.03284 -30.94298 -30.28397 -27.63213 -26.86615 -25.88473 -24.31387 -23.17459 -22.34186 -22.05777 -21.37169 -20.60690 -19.97488 -18.84209 -18.03270 -17.21014 -16.95423 -16.58734 -15.87645 -15.52244 -15.20825 -14.82081 -14.69373 -14.47139 -14.29949 -14.07092 -13.56573 -13.51857 -13.25018 -13.17340 -13.11519 -13.02118 -12.93407 -12.81973 -12.43540 -12.36953 -12.07792 -11.70311 -11.43578 -11.36472 -11.23050 -11.02425 -10.94114 -10.75529 -10.56623 -10.46457 -10.27331 -10.16087 -10.03359 -9.81897 -9.65157 -8.84770 -8.80163 -8.73136 -6.88048 -5.73578 -3.01987 1.36701 2.24991 2.42103 2.58611 2.86705 3.45318 3.50049 3.51924 4.05998 4.36280 4.46200 4.51361 4.57150 4.62377 4.68436 4.76099 4.79880 4.81621 4.87104 4.97352 5.16373 5.20017 5.22936 5.32534 5.37430 5.42056 5.47591 5.53625 5.57190 5.60904 5.62117 5.65953 5.73497 5.76194 5.78631 5.83574 5.93133 5.99794 6.11721 6.15404 6.24279 6.26230 6.36732 6.45740 6.50924 6.80212 6.89666 6.94498 7.21968 7.72226 7.98022 8.45649 9.56375 10.15735 10.50121 11.49450 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.034928 B = 0.001763 C = 0.001742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 801.460913 B =15880.341682 C =16069.056593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.106 4.106 3 H 0.097 0.903 4 C -0.024 4.024 5 C -0.003 4.003 6 C -0.212 4.212 7 C -0.213 4.213 8 C -0.046 4.046 9 O -0.173 6.173 10 C 0.520 3.480 11 O -0.539 6.539 12 N -0.608 5.608 13 C 0.103 3.897 14 C -0.135 4.135 15 C -0.118 4.118 16 C -0.095 4.095 17 H 0.073 0.927 18 C -0.119 4.119 19 C 0.155 3.845 20 N -0.734 5.734 21 C -0.239 4.239 22 H 0.070 0.930 23 C -0.016 4.016 24 N -0.934 5.934 25 Si 0.907 3.093 26 H -0.290 1.290 27 H -0.291 1.291 28 H -0.282 1.282 29 C 0.115 3.885 30 H 0.064 0.936 31 H 0.068 0.932 32 H 0.066 0.934 33 H 0.094 0.906 34 H 0.098 0.902 35 H 0.147 0.853 36 H 0.147 0.853 37 H 0.201 0.799 38 H 0.070 0.930 39 H 0.084 0.916 40 H 0.075 0.925 41 H 0.066 0.934 42 H 0.064 0.936 43 H 0.076 0.924 44 H 0.064 0.936 45 H 0.064 0.936 46 H 0.020 0.980 47 H 0.015 0.985 48 H 0.383 0.617 49 H 0.255 0.745 50 H 0.093 0.907 51 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.738 12.265 -30.978 33.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.128 4.128 3 H 0.115 0.885 4 C -0.062 4.062 5 C -0.053 4.053 6 C -0.231 4.231 7 C -0.232 4.232 8 C -0.113 4.113 9 O -0.069 6.069 10 C 0.308 3.692 11 O -0.416 6.416 12 N -0.341 5.341 13 C -0.020 4.020 14 C -0.173 4.173 15 C -0.156 4.156 16 C -0.115 4.115 17 H 0.091 0.909 18 C -0.158 4.158 19 C 0.027 3.973 20 N -0.378 5.378 21 C -0.370 4.370 22 H 0.087 0.913 23 C -0.211 4.211 24 N -0.583 5.583 25 Si 0.738 3.262 26 H -0.217 1.217 27 H -0.218 1.218 28 H -0.208 1.208 29 C -0.007 4.007 30 H 0.083 0.917 31 H 0.087 0.913 32 H 0.085 0.915 33 H 0.112 0.888 34 H 0.116 0.884 35 H 0.165 0.835 36 H 0.165 0.835 37 H 0.218 0.782 38 H 0.088 0.912 39 H 0.103 0.897 40 H 0.093 0.907 41 H 0.085 0.915 42 H 0.083 0.917 43 H 0.094 0.906 44 H 0.083 0.917 45 H 0.082 0.918 46 H 0.038 0.962 47 H 0.033 0.967 48 H 0.217 0.783 49 H 0.064 0.936 50 H 0.111 0.889 51 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -3.932 11.444 -30.805 33.096 hybrid contribution -0.081 0.193 0.800 0.827 sum -4.013 11.637 -30.005 32.432 Atomic orbital electron populations 1.21802 0.92072 1.03480 1.02722 1.21333 0.98438 1.00716 0.92285 0.88518 1.19974 1.02010 0.98354 0.85841 1.22363 0.85992 1.00245 0.96694 1.21624 1.02487 1.00504 0.98510 1.21839 0.95904 1.04231 1.01261 1.24039 1.01152 0.93431 0.92699 1.84049 1.37651 1.50734 1.34502 1.20462 0.77498 0.86999 0.84240 1.90713 1.50448 1.15515 1.84878 1.48124 1.61429 1.13338 1.11195 1.21857 0.98460 0.82057 0.99634 1.21937 0.98588 1.01733 0.95057 1.21656 1.01115 0.95388 0.97392 1.21364 0.99085 0.96554 0.94470 0.90869 1.21697 0.99273 1.01135 0.93675 1.20664 0.94007 0.96337 0.86290 1.42381 1.13869 1.76200 1.05396 1.19239 0.95422 1.34866 0.87461 0.91251 1.24747 0.96340 1.01987 0.98065 1.69664 1.11656 1.48746 1.28205 0.86183 0.78772 0.77712 0.83496 1.21739 1.21770 1.20801 1.21662 0.95715 0.99594 0.83730 0.91708 0.91321 0.91494 0.88768 0.88361 0.83518 0.83549 0.78219 0.91173 0.89748 0.90657 0.91489 0.91683 0.90572 0.91713 0.91773 0.96223 0.96666 0.78334 0.93550 0.88885 0.91343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.09 8.60 37.16 0.32 -0.77 16 2 C -0.11 -0.86 1.84 -91.77 -0.17 -1.03 16 3 H 0.10 0.62 6.74 -51.93 -0.35 0.27 16 4 C -0.02 -0.20 4.67 -27.89 -0.13 -0.33 16 5 C 0.00 -0.02 5.75 -35.62 -0.20 -0.23 16 6 C -0.21 -1.64 10.81 -39.70 -0.43 -2.07 16 7 C -0.21 -1.47 10.91 -39.70 -0.43 -1.90 16 8 C -0.05 -0.30 12.09 29.42 0.36 0.05 16 9 O -0.17 -1.52 10.24 5.72 0.06 -1.47 16 10 C 0.52 5.89 6.80 -10.99 -0.07 5.81 16 11 O -0.54 -8.15 15.62 5.56 0.09 -8.06 16 12 N -0.61 -6.34 2.98 -173.03 -0.52 -6.85 16 13 C 0.10 0.78 5.92 -3.71 -0.02 0.76 16 14 C -0.13 -1.13 6.08 -26.61 -0.16 -1.29 16 15 C -0.12 -1.30 4.95 -26.69 -0.13 -1.44 16 16 C -0.09 -1.22 2.32 -90.72 -0.21 -1.43 16 17 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 18 C -0.12 -1.92 4.80 -26.73 -0.13 -2.04 16 19 C 0.15 3.14 6.02 -4.04 -0.02 3.11 16 20 N -0.73 -19.11 5.60 -59.91 -0.34 -19.44 16 21 C -0.24 -6.84 9.99 -15.06 -0.15 -6.99 16 22 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 23 C -0.02 -0.46 5.50 -17.43 -0.10 -0.55 16 24 N -0.93 -28.74 13.06 55.49 0.72 -28.02 16 25 Si 0.91 22.73 29.55 -169.99 -5.02 17.71 16 26 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 27 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 28 H -0.28 -6.86 7.11 56.52 0.40 -6.45 16 29 C 0.11 1.38 5.70 -3.93 -0.02 1.36 16 30 H 0.06 0.46 7.18 -51.92 -0.37 0.08 16 31 H 0.07 0.49 7.20 -51.93 -0.37 0.11 16 32 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.09 0.89 8.03 -51.93 -0.42 0.47 16 34 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.15 0.92 8.06 -52.49 -0.42 0.49 16 36 H 0.15 0.71 8.06 -52.48 -0.42 0.29 16 37 H 0.20 0.61 8.06 -52.49 -0.42 0.18 16 38 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 39 H 0.08 0.49 4.88 -51.92 -0.25 0.24 16 40 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 42 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.08 0.94 6.50 -51.93 -0.34 0.60 16 44 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 45 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 46 H 0.02 0.40 6.54 -51.93 -0.34 0.06 16 47 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 48 H 0.38 10.45 7.67 -40.82 -0.31 10.14 16 49 H 0.25 7.56 8.31 -40.82 -0.34 7.22 16 50 H 0.09 1.29 7.00 -51.93 -0.36 0.93 16 51 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 402.74 15.07 6.07 6.07 Total: -1.00 -34.19 402.74 -9.24 -43.43 By element: Atomic # 1 Polarization: 14.20 SS G_CDS: -8.59 Total: 5.61 kcal Atomic # 6 Polarization: -7.26 SS G_CDS: -1.71 Total: -8.97 kcal Atomic # 7 Polarization: -54.19 SS G_CDS: -0.13 Total: -54.31 kcal Atomic # 8 Polarization: -9.67 SS G_CDS: 0.15 Total: -9.53 kcal Atomic # 14 Polarization: 22.73 SS G_CDS: -5.02 Total: 17.71 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -34.19 -9.24 -43.43 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753557954.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.592 kcal (2) G-P(sol) polarization free energy of solvation -34.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.425 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds