Wall clock time and date at job start Tue Mar 31 2020 20:27:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 109.47009 * 2 1 4 4 C 1.52991 * 109.46983 * 239.99854 * 2 1 3 5 5 C 1.50697 * 109.47432 * 64.99833 * 4 2 1 6 6 C 1.34522 * 125.78760 * 90.00054 * 5 4 2 7 7 C 1.41383 * 106.83671 * 180.02562 * 6 5 4 8 8 C 1.34513 * 106.84514 * 0.22414 * 7 6 5 9 9 O 1.34297 * 125.79392 * 270.02754 * 5 4 2 10 10 C 1.50702 * 109.47327 * 119.99746 * 2 1 3 11 11 O 1.21279 * 119.99925 * 94.71367 * 10 2 1 12 12 N 1.34775 * 120.00110 * 274.72407 * 10 2 1 13 13 C 1.46927 * 120.63309 * 5.21134 * 12 10 2 14 14 C 1.53192 * 108.77753 * 126.37266 * 13 12 10 15 15 C 1.53046 * 109.30766 * 54.63560 * 14 13 12 16 16 C 1.53037 * 109.54006 * 298.63610 * 15 14 13 17 17 H 1.08999 * 109.49835 * 301.41491 * 16 15 14 18 18 C 1.53000 * 109.49330 * 181.34584 * 16 15 14 19 19 C 1.53004 * 109.47122 * 65.00542 * 18 16 15 20 20 N 1.46497 * 109.47457 * 179.97438 * 19 18 16 21 21 C 1.36936 * 120.00232 * 179.97438 * 20 19 18 22 22 H 1.08001 * 119.99633 * 359.97438 * 21 20 19 23 23 C 1.38810 * 120.00200 * 179.97438 * 21 20 19 24 24 N 1.31620 * 119.99737 * 359.97438 * 23 21 20 25 25 Si 1.86797 * 120.00261 * 180.02562 * 23 21 20 26 26 H 1.48496 * 109.47215 * 89.99612 * 25 23 21 27 27 H 1.48497 * 109.47323 * 209.99818 * 25 23 21 28 28 H 1.48500 * 109.46935 * 330.00109 * 25 23 21 29 29 C 1.46926 * 120.63029 * 184.94407 * 12 10 2 30 30 H 1.09008 * 109.46923 * 294.92085 * 1 2 3 31 31 H 1.08998 * 109.47262 * 54.91681 * 1 2 3 32 32 H 1.09003 * 109.47223 * 174.92240 * 1 2 3 33 33 H 1.09004 * 109.47140 * 304.99632 * 4 2 1 34 34 H 1.09000 * 109.47356 * 185.00014 * 4 2 1 35 35 H 1.07996 * 126.57836 * 0.05192 * 6 5 4 36 36 H 1.08007 * 126.57424 * 179.97438 * 7 6 5 37 37 H 1.08000 * 125.78792 * 179.77615 * 8 7 6 38 38 H 1.08997 * 109.58719 * 246.16415 * 13 12 10 39 39 H 1.09009 * 109.58309 * 6.44656 * 13 12 10 40 40 H 1.08997 * 109.50015 * 174.59009 * 14 13 12 41 41 H 1.09003 * 109.49575 * 294.65917 * 14 13 12 42 42 H 1.09006 * 109.45684 * 58.66143 * 15 14 13 43 43 H 1.08996 * 109.45651 * 178.62412 * 15 14 13 44 44 H 1.09000 * 109.46747 * 184.99677 * 18 16 15 45 45 H 1.08993 * 109.47694 * 304.99990 * 18 16 15 46 46 H 1.09004 * 109.46752 * 299.99693 * 19 18 16 47 47 H 1.09000 * 109.46976 * 59.99453 * 19 18 16 48 48 H 0.96999 * 119.99483 * 359.97438 * 20 19 18 49 49 H 0.97004 * 120.00282 * 179.97438 * 24 23 21 50 50 H 1.08997 * 109.58716 * 353.40737 * 29 12 10 51 51 H 1.08995 * 109.59181 * 113.83920 * 29 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.6413 0.0569 -2.4765 6 6 2.3656 1.0274 -3.0624 7 6 1.6192 1.4809 -4.1742 8 6 0.4813 0.7640 -4.1984 9 8 0.5025 -0.1004 -3.1707 10 6 2.0324 -0.7104 1.2305 11 8 2.3159 -1.8883 1.1773 12 7 2.1664 -0.0366 2.3900 13 6 1.7206 1.3590 2.5008 14 6 0.7670 1.4788 3.6937 15 6 1.4558 0.9374 4.9486 16 6 1.7956 -0.5413 4.7485 17 1 0.8826 -1.0996 4.5416 18 6 2.4538 -1.0900 6.0160 19 6 1.4472 -1.0587 7.1678 20 7 2.0772 -1.5847 8.3814 21 6 1.3639 -1.6538 9.5483 22 1 0.3371 -1.3201 9.5740 23 6 1.9607 -2.1527 10.6980 24 7 3.2120 -2.5598 10.6664 25 14 0.9876 -2.2476 12.2896 26 1 0.3026 -3.5625 12.3733 27 1 1.9098 -2.0955 13.4435 28 1 -0.0235 -1.1602 12.3172 29 6 2.7558 -0.6856 3.5691 30 1 -0.3633 0.4331 0.9321 31 1 -0.3634 0.5906 -0.8409 32 1 -0.3634 -1.0236 -0.0910 33 1 1.6054 -1.7198 -1.2950 34 1 3.1263 -0.7995 -1.2056 35 1 3.3319 1.3901 -2.7447 36 1 1.9058 2.2572 -4.8684 37 1 -0.3133 0.8647 -4.9229 38 1 2.5833 2.0069 2.6561 39 1 1.2040 1.6512 1.5865 40 1 0.5042 2.5256 3.8458 41 1 -0.1365 0.9018 3.4965 42 1 2.3720 1.4992 5.1309 43 1 0.7883 1.0440 5.8037 44 1 2.7758 -2.1168 5.8427 45 1 3.3177 -0.4766 6.2716 46 1 1.1251 -0.0319 7.3411 47 1 0.5833 -1.6723 6.9121 48 1 2.9995 -1.8840 8.3582 49 1 3.6292 -2.9080 11.4699 50 1 2.9197 -1.7428 3.3605 51 1 3.7045 -0.2078 3.8133 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753557954.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:27:26 Heat of formation + Delta-G solvation = -49.935221 kcal Electronic energy + Delta-G solvation = -28615.490897 eV Core-core repulsion = 24708.130815 eV Total energy + Delta-G solvation = -3907.360082 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -43.47032 -41.49292 -39.11681 -36.94741 -36.19881 -34.94323 -33.81514 -33.16494 -32.44877 -31.03097 -29.13227 -27.46341 -26.71286 -25.94557 -24.28181 -23.38197 -22.72906 -22.53083 -21.35493 -20.97095 -19.65363 -19.13188 -18.67971 -17.79517 -17.30717 -16.80322 -16.57074 -16.32819 -16.06586 -15.72891 -15.60689 -15.30467 -15.03490 -14.98462 -14.74985 -14.38951 -14.17132 -14.01623 -13.78701 -13.67385 -13.44219 -13.30821 -13.15525 -12.99125 -12.96265 -12.87922 -12.44255 -12.42320 -12.31832 -12.13074 -12.05166 -11.94970 -11.81285 -11.66979 -11.53215 -11.26405 -10.92060 -10.82611 -10.68595 -9.64220 -9.33703 -9.01182 -7.96618 -5.26114 0.82424 1.46091 1.48594 1.54434 1.57041 1.73501 1.91933 2.21425 2.55176 3.36160 3.37001 3.69448 3.72543 3.78747 3.82971 3.91415 4.02491 4.05724 4.14472 4.19342 4.25779 4.31938 4.36258 4.41677 4.55415 4.56928 4.57396 4.65641 4.71328 4.76545 4.78732 4.85525 4.86953 4.89062 4.93863 5.00131 5.03505 5.10574 5.15045 5.19570 5.24719 5.29161 5.33488 5.44761 5.46809 5.51405 5.54333 5.66755 6.25823 6.27260 6.39498 7.11416 7.31428 8.07956 8.31125 9.27056 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.034928 B = 0.001763 C = 0.001742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 801.460913 B =15880.341682 C =16069.056593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.095 4.095 3 H 0.123 0.877 4 C -0.020 4.020 5 C -0.020 4.020 6 C -0.215 4.215 7 C -0.226 4.226 8 C -0.046 4.046 9 O -0.192 6.192 10 C 0.516 3.484 11 O -0.586 6.586 12 N -0.606 5.606 13 C 0.099 3.901 14 C -0.129 4.129 15 C -0.117 4.117 16 C -0.083 4.083 17 H 0.060 0.940 18 C -0.107 4.107 19 C 0.154 3.846 20 N -0.749 5.749 21 C -0.249 4.249 22 H 0.075 0.925 23 C -0.077 4.077 24 N -0.970 5.970 25 Si 0.977 3.023 26 H -0.288 1.288 27 H -0.293 1.293 28 H -0.268 1.268 29 C 0.119 3.881 30 H 0.073 0.927 31 H 0.077 0.923 32 H 0.049 0.951 33 H 0.074 0.926 34 H 0.098 0.902 35 H 0.159 0.841 36 H 0.166 0.834 37 H 0.232 0.768 38 H 0.088 0.912 39 H 0.109 0.891 40 H 0.101 0.899 41 H 0.061 0.939 42 H 0.072 0.928 43 H 0.062 0.938 44 H 0.051 0.949 45 H 0.067 0.933 46 H 0.030 0.970 47 H 0.009 0.991 48 H 0.373 0.627 49 H 0.252 0.748 50 H 0.068 0.932 51 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.821 14.952 -32.343 35.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.116 4.116 3 H 0.141 0.859 4 C -0.058 4.058 5 C -0.070 4.070 6 C -0.234 4.234 7 C -0.244 4.244 8 C -0.113 4.113 9 O -0.088 6.088 10 C 0.305 3.695 11 O -0.466 6.466 12 N -0.338 5.338 13 C -0.022 4.022 14 C -0.167 4.167 15 C -0.154 4.154 16 C -0.103 4.103 17 H 0.078 0.922 18 C -0.146 4.146 19 C 0.028 3.972 20 N -0.392 5.392 21 C -0.381 4.381 22 H 0.093 0.907 23 C -0.270 4.270 24 N -0.621 5.621 25 Si 0.805 3.195 26 H -0.215 1.215 27 H -0.219 1.219 28 H -0.192 1.192 29 C -0.004 4.004 30 H 0.092 0.908 31 H 0.096 0.904 32 H 0.068 0.932 33 H 0.093 0.907 34 H 0.117 0.883 35 H 0.176 0.824 36 H 0.183 0.817 37 H 0.248 0.752 38 H 0.106 0.894 39 H 0.127 0.873 40 H 0.119 0.881 41 H 0.080 0.920 42 H 0.090 0.910 43 H 0.080 0.920 44 H 0.070 0.930 45 H 0.085 0.915 46 H 0.048 0.952 47 H 0.027 0.973 48 H 0.205 0.795 49 H 0.060 0.940 50 H 0.086 0.914 51 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -5.052 14.181 -32.197 35.543 hybrid contribution 0.236 -0.632 1.146 1.330 sum -4.815 13.549 -31.052 34.219 Atomic orbital electron populations 1.21767 0.91527 1.02717 1.03564 1.21312 0.98648 1.01368 0.90285 0.85949 1.19865 1.01908 0.97558 0.86448 1.22298 0.86524 1.01015 0.97132 1.21898 1.02862 1.00067 0.98581 1.22157 0.95932 1.04899 1.01450 1.24749 1.01958 0.92328 0.92240 1.84040 1.37949 1.51581 1.35272 1.21066 0.76660 0.86546 0.85196 1.90694 1.52527 1.17713 1.85639 1.48219 1.60817 1.14451 1.10289 1.22128 0.99272 0.80331 1.00476 1.21912 0.98119 1.02964 0.93712 1.21635 1.01464 0.93825 0.98509 1.21210 0.98270 0.97817 0.93028 0.92192 1.21554 0.98466 1.00778 0.93764 1.20819 0.94566 0.96080 0.85717 1.42631 1.13516 1.76481 1.06558 1.19661 0.95832 1.34041 0.88538 0.90679 1.25625 0.97452 1.02304 1.01571 1.69827 1.13323 1.50053 1.28864 0.85095 0.77479 0.77942 0.78977 1.21470 1.21940 1.19237 1.21454 0.96082 0.98682 0.84137 0.90770 0.90373 0.93187 0.90689 0.88345 0.82359 0.81680 0.75161 0.89352 0.87284 0.88095 0.92020 0.90954 0.91951 0.93049 0.91463 0.95209 0.97288 0.79549 0.93953 0.91357 0.90187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.91 8.60 71.98 0.62 -1.29 16 2 C -0.10 -1.41 1.84 -11.54 -0.02 -1.43 16 3 H 0.12 1.19 6.74 -2.39 -0.02 1.18 16 4 C -0.02 -0.33 4.67 29.84 0.14 -0.19 16 5 C -0.02 -0.32 5.75 24.83 0.14 -0.17 16 6 C -0.22 -2.93 10.81 22.19 0.24 -2.69 16 7 C -0.23 -2.59 10.91 22.19 0.24 -2.35 16 8 C -0.05 -0.51 12.09 66.97 0.81 0.30 16 9 O -0.19 -3.15 10.24 -2.43 -0.02 -3.18 16 10 C 0.52 11.44 6.80 87.66 0.60 12.04 16 11 O -0.59 -18.40 15.62 -3.03 -0.05 -18.44 16 12 N -0.61 -11.82 2.98 -819.73 -2.44 -14.26 16 13 C 0.10 1.19 5.92 86.36 0.51 1.70 16 14 C -0.13 -1.78 6.08 30.67 0.19 -1.59 16 15 C -0.12 -2.38 4.95 30.62 0.15 -2.22 16 16 C -0.08 -2.11 2.32 -10.86 -0.03 -2.14 16 17 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 18 C -0.11 -3.49 4.80 30.60 0.15 -3.34 16 19 C 0.15 6.33 6.02 86.38 0.52 6.85 16 20 N -0.75 -39.64 5.60 -343.45 -1.92 -41.56 16 21 C -0.25 -14.35 9.99 84.03 0.84 -13.51 16 22 H 0.08 4.14 7.83 -2.91 -0.02 4.12 16 23 C -0.08 -4.55 5.50 84.86 0.47 -4.09 16 24 N -0.97 -60.66 13.06 21.65 0.28 -60.38 16 25 Si 0.98 46.86 29.55 68.60 2.03 48.89 16 26 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 27 H -0.29 -14.03 7.11 99.48 0.71 -13.32 16 28 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 29 C 0.12 2.84 5.70 86.22 0.49 3.33 16 30 H 0.07 0.87 7.18 -2.38 -0.02 0.86 16 31 H 0.08 0.95 7.20 -2.39 -0.02 0.94 16 32 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 33 H 0.07 1.51 8.03 -2.39 -0.02 1.49 16 34 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 35 H 0.16 1.66 8.06 -2.91 -0.02 1.63 16 36 H 0.17 1.16 8.06 -2.91 -0.02 1.13 16 37 H 0.23 0.74 8.06 -2.91 -0.02 0.72 16 38 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 39 H 0.11 0.81 4.88 -2.38 -0.01 0.80 16 40 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 41 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 42 H 0.07 1.39 8.14 -2.38 -0.02 1.37 16 43 H 0.06 1.45 6.50 -2.39 -0.02 1.43 16 44 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 45 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 46 H 0.03 1.18 6.54 -2.38 -0.02 1.17 16 47 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 48 H 0.37 20.91 7.67 -92.71 -0.71 20.20 16 49 H 0.25 15.19 8.31 -92.71 -0.77 14.42 16 50 H 0.07 1.98 7.00 -2.39 -0.02 1.97 16 51 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 Total: -1.00 -75.34 402.74 4.13 -71.21 By element: Atomic # 1 Polarization: 28.33 SS G_CDS: 0.20 Total: 28.54 kcal Atomic # 6 Polarization: -16.86 SS G_CDS: 6.06 Total: -10.80 kcal Atomic # 7 Polarization: -112.12 SS G_CDS: -4.08 Total: -116.21 kcal Atomic # 8 Polarization: -21.55 SS G_CDS: -0.07 Total: -21.62 kcal Atomic # 14 Polarization: 46.86 SS G_CDS: 2.03 Total: 48.89 kcal Total: -75.34 4.13 -71.21 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753557954.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.270 kcal (2) G-P(sol) polarization free energy of solvation -75.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.206 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds