Wall clock time and date at job start Tue Mar 31 2020 20:27:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08995 * 109.47052 * 2 1 4 4 C 1.52999 * 109.46929 * 119.99438 * 2 1 3 5 5 C 1.50696 * 109.47450 * 295.00186 * 4 2 1 6 6 C 1.34516 * 125.78894 * 89.99905 * 5 4 2 7 7 C 1.41392 * 106.83840 * 180.02562 * 6 5 4 8 8 C 1.34512 * 106.83988 * 0.22715 * 7 6 5 9 9 O 1.34298 * 108.42342 * 359.63471 * 8 7 6 10 10 C 1.50697 * 109.47025 * 239.99604 * 2 1 3 11 11 O 1.21287 * 119.99795 * 257.16992 * 10 2 1 12 12 N 1.34775 * 120.00361 * 77.17367 * 10 2 1 13 13 C 1.46924 * 120.62826 * 5.57001 * 12 10 2 14 14 C 1.53191 * 108.77455 * 126.36984 * 13 12 10 15 15 C 1.53036 * 109.31155 * 54.63833 * 14 13 12 16 16 C 1.53044 * 109.53678 * 298.63097 * 15 14 13 17 17 H 1.08999 * 109.49490 * 301.41707 * 16 15 14 18 18 C 1.52995 * 109.49759 * 181.35128 * 16 15 14 19 19 C 1.53003 * 109.47327 * 64.99948 * 18 16 15 20 20 N 1.46499 * 109.47229 * 179.97438 * 19 18 16 21 21 C 1.36935 * 119.99897 * 180.02562 * 20 19 18 22 22 H 1.07996 * 120.00100 * 359.97438 * 21 20 19 23 23 C 1.38816 * 119.99871 * 180.02562 * 21 20 19 24 24 N 1.31616 * 119.99882 * 179.97438 * 23 21 20 25 25 Si 1.86804 * 119.99960 * 359.97438 * 23 21 20 26 26 H 1.48496 * 109.46799 * 90.00596 * 25 23 21 27 27 H 1.48501 * 109.47006 * 210.00574 * 25 23 21 28 28 H 1.48501 * 109.46935 * 330.00426 * 25 23 21 29 29 C 1.46919 * 120.63375 * 185.29493 * 12 10 2 30 30 H 1.09000 * 109.46852 * 180.84375 * 1 2 3 31 31 H 1.08999 * 109.47169 * 300.84360 * 1 2 3 32 32 H 1.08997 * 109.46914 * 60.84842 * 1 2 3 33 33 H 1.09002 * 109.47179 * 175.00054 * 4 2 1 34 34 H 1.09000 * 109.47251 * 55.00345 * 4 2 1 35 35 H 1.07994 * 126.58132 * 359.97438 * 6 5 4 36 36 H 1.07993 * 126.57785 * 179.97438 * 7 6 5 37 37 H 1.08000 * 125.78709 * 179.77050 * 8 7 6 38 38 H 1.08996 * 109.58780 * 246.16200 * 13 12 10 39 39 H 1.09003 * 109.58645 * 6.44199 * 13 12 10 40 40 H 1.09011 * 109.49519 * 174.58850 * 14 13 12 41 41 H 1.09003 * 109.49971 * 294.64906 * 14 13 12 42 42 H 1.09001 * 109.46302 * 58.65437 * 15 14 13 43 43 H 1.09001 * 109.46022 * 178.62521 * 15 14 13 44 44 H 1.09005 * 109.47348 * 185.00018 * 18 16 15 45 45 H 1.09008 * 109.47406 * 305.00159 * 18 16 15 46 46 H 1.08993 * 109.47293 * 300.00258 * 19 18 16 47 47 H 1.08999 * 109.46630 * 60.00033 * 19 18 16 48 48 H 0.97000 * 119.99875 * 0.02562 * 20 19 18 49 49 H 0.96999 * 120.00146 * 179.97438 * 24 23 21 50 50 H 1.09002 * 109.58545 * 353.41066 * 29 12 10 51 51 H 1.08994 * 109.59163 * 113.83997 * 29 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 1.6413 0.0572 2.4766 6 6 0.5008 -0.1007 3.1721 7 6 0.5391 0.8278 4.2378 8 6 1.6984 1.5010 4.1267 9 8 2.3641 1.0266 3.0611 10 6 2.0324 -0.7105 -1.2304 11 8 2.4544 -1.8444 -1.1460 12 7 2.0127 -0.0859 -2.4245 13 6 1.6197 1.3263 -2.5242 14 6 2.7226 2.0943 -3.2595 15 6 2.9961 1.4214 -4.6065 16 6 3.4786 -0.0122 -4.3739 17 1 4.3810 0.0023 -3.7627 18 6 3.7839 -0.6730 -5.7196 19 6 4.9586 0.0460 -6.3860 20 7 5.2513 -0.5872 -7.6743 21 6 6.2704 -0.1111 -8.4553 22 1 6.8580 0.7313 -8.1217 23 6 6.5474 -0.7107 -9.6763 24 7 7.5265 -0.2528 -10.4272 25 14 5.5304 -2.1674 -10.2535 26 1 4.3679 -1.6795 -11.0383 27 1 6.3679 -3.0492 -11.1057 28 1 5.0469 -2.9314 -9.0755 29 6 2.3897 -0.8025 -3.6505 30 1 -0.3633 -1.0276 0.0151 31 1 -0.3633 0.5269 0.8823 32 1 -0.3633 0.5006 -0.8975 33 1 3.1264 -0.7994 1.2057 34 1 1.6054 -1.7197 1.2953 35 1 -0.2923 -0.8015 2.9573 36 1 -0.2190 0.9720 4.9933 37 1 2.0373 2.2878 4.7842 38 1 0.6854 1.4072 -3.0797 39 1 1.4875 1.7402 -1.5246 40 1 2.4014 3.1227 -3.4251 41 1 3.6320 2.0895 -2.6585 42 1 2.0800 1.4049 -5.1969 43 1 3.7634 1.9801 -5.1424 44 1 4.0420 -1.7200 -5.5601 45 1 2.9064 -0.6091 -6.3632 46 1 4.7006 1.0928 -6.5455 47 1 5.8360 -0.0180 -5.7425 48 1 4.7232 -1.3436 -7.9741 49 1 7.7204 -0.6719 -11.2802 50 1 2.7678 -1.7920 -3.3937 51 1 1.5195 -0.8987 -4.2997 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753557955.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:27:31 Heat of formation + Delta-G solvation = -24.950465 kcal Electronic energy + Delta-G solvation = -28675.712443 eV Core-core repulsion = 24769.435781 eV Total energy + Delta-G solvation = -3906.276662 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.94452 -40.66975 -38.19163 -35.63617 -35.45695 -33.57335 -33.18093 -32.08485 -31.14991 -30.32784 -27.99254 -27.05972 -25.91545 -24.34499 -23.10912 -22.25022 -22.06504 -21.28657 -20.68350 -20.03657 -19.01357 -18.00542 -17.48512 -17.16703 -16.57850 -15.89762 -15.80589 -15.11389 -14.87592 -14.63944 -14.51809 -14.43175 -14.07471 -13.82665 -13.61493 -13.28317 -13.20680 -13.13066 -13.09476 -12.93485 -12.68773 -12.62710 -12.30960 -12.22489 -11.78676 -11.63745 -11.51527 -11.32156 -11.13349 -11.05157 -10.80618 -10.63538 -10.51008 -10.26682 -10.26183 -10.09474 -9.84919 -9.57208 -8.88398 -8.82373 -8.76884 -7.19849 -5.74762 -3.09873 1.35284 2.23517 2.38197 2.56865 2.81869 3.39332 3.42358 3.46901 4.03876 4.29453 4.43401 4.47033 4.54355 4.61335 4.66831 4.71596 4.75311 4.78134 4.80915 4.88091 5.09167 5.16984 5.19555 5.26096 5.31389 5.36468 5.46284 5.47854 5.50751 5.55926 5.58124 5.58839 5.66504 5.67176 5.73170 5.79050 5.84294 5.86668 5.98852 6.05069 6.13988 6.16618 6.24282 6.30697 6.41711 6.77811 6.78806 6.82203 7.16677 7.93051 8.02023 8.44501 9.24051 9.96631 10.16783 11.43750 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.027989 B = 0.001882 C = 0.001859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1000.145769 B =14876.261710 C =15061.381248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.107 4.107 3 H 0.098 0.902 4 C -0.023 4.023 5 C -0.005 4.005 6 C -0.208 4.208 7 C -0.214 4.214 8 C -0.044 4.044 9 O -0.176 6.176 10 C 0.521 3.479 11 O -0.540 6.540 12 N -0.608 5.608 13 C 0.104 3.896 14 C -0.136 4.136 15 C -0.119 4.119 16 C -0.095 4.095 17 H 0.075 0.925 18 C -0.124 4.124 19 C 0.158 3.842 20 N -0.758 5.758 21 C -0.244 4.244 22 H 0.089 0.911 23 C 0.002 3.998 24 N -0.935 5.935 25 Si 0.886 3.114 26 H -0.284 1.284 27 H -0.291 1.291 28 H -0.277 1.277 29 C 0.115 3.885 30 H 0.064 0.936 31 H 0.072 0.928 32 H 0.063 0.937 33 H 0.088 0.912 34 H 0.104 0.896 35 H 0.148 0.852 36 H 0.147 0.853 37 H 0.201 0.799 38 H 0.070 0.930 39 H 0.084 0.916 40 H 0.076 0.924 41 H 0.067 0.933 42 H 0.064 0.936 43 H 0.077 0.923 44 H 0.064 0.936 45 H 0.063 0.937 46 H 0.029 0.971 47 H 0.024 0.976 48 H 0.360 0.640 49 H 0.259 0.741 50 H 0.093 0.907 51 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.401 5.144 29.551 35.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.129 4.129 3 H 0.116 0.884 4 C -0.061 4.061 5 C -0.056 4.056 6 C -0.228 4.228 7 C -0.233 4.233 8 C -0.112 4.112 9 O -0.072 6.072 10 C 0.309 3.691 11 O -0.417 6.417 12 N -0.340 5.340 13 C -0.019 4.019 14 C -0.174 4.174 15 C -0.156 4.156 16 C -0.115 4.115 17 H 0.094 0.906 18 C -0.162 4.162 19 C 0.031 3.969 20 N -0.403 5.403 21 C -0.373 4.373 22 H 0.107 0.893 23 C -0.193 4.193 24 N -0.583 5.583 25 Si 0.716 3.284 26 H -0.211 1.211 27 H -0.217 1.217 28 H -0.203 1.203 29 C -0.007 4.007 30 H 0.083 0.917 31 H 0.091 0.909 32 H 0.082 0.918 33 H 0.106 0.894 34 H 0.123 0.877 35 H 0.165 0.835 36 H 0.165 0.835 37 H 0.218 0.782 38 H 0.089 0.911 39 H 0.102 0.898 40 H 0.094 0.906 41 H 0.086 0.914 42 H 0.083 0.917 43 H 0.096 0.904 44 H 0.082 0.918 45 H 0.082 0.918 46 H 0.047 0.953 47 H 0.042 0.958 48 H 0.193 0.807 49 H 0.069 0.931 50 H 0.111 0.889 51 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -18.706 4.768 29.409 35.178 hybrid contribution -0.828 -0.874 -0.399 1.268 sum -19.534 3.894 29.010 35.190 Atomic orbital electron populations 1.21849 0.92138 1.03228 1.03124 1.21298 0.98315 1.00945 0.92305 0.88383 1.19954 1.03103 0.97049 0.85948 1.22399 0.92214 0.93019 0.97924 1.21616 0.99433 1.03897 0.97805 1.21849 0.99675 0.99894 1.01923 1.24042 0.93649 1.02234 0.91259 1.84041 1.44291 1.42974 1.35855 1.20460 0.77868 0.86585 0.84222 1.90713 1.46561 1.18857 1.85534 1.48093 1.66886 1.11971 1.07081 1.21867 0.97996 0.80461 1.01579 1.21944 0.98905 0.99171 0.97398 1.21661 1.02085 0.95564 0.96291 1.21357 0.98247 0.95066 0.96832 0.90645 1.21750 0.99677 1.00022 0.94747 1.20647 0.94045 0.95273 0.86927 1.42733 1.40074 1.37969 1.19550 1.19073 1.07304 1.12615 0.98351 0.89286 1.24685 0.98349 0.99209 0.97069 1.69704 1.31994 1.43403 1.13225 0.86523 0.80011 0.83492 0.78384 1.21105 1.21729 1.20312 1.21645 0.97832 0.96776 0.84425 0.91705 0.90868 0.91778 0.89383 0.87736 0.83471 0.83529 0.78191 0.91144 0.89775 0.90573 0.91400 0.91697 0.90431 0.91752 0.91819 0.95344 0.95796 0.80725 0.93098 0.88910 0.91430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.90 8.70 37.16 0.32 -0.58 16 2 C -0.11 -0.83 1.86 -91.77 -0.17 -1.00 16 3 H 0.10 0.67 6.46 -51.93 -0.34 0.34 16 4 C -0.02 -0.19 4.57 -27.89 -0.13 -0.32 16 5 C -0.01 -0.04 6.05 -35.63 -0.22 -0.26 16 6 C -0.21 -1.55 9.43 -39.70 -0.37 -1.93 16 7 C -0.21 -1.44 10.91 -39.70 -0.43 -1.87 16 8 C -0.04 -0.29 12.09 29.42 0.36 0.06 16 9 O -0.18 -1.57 10.65 5.70 0.06 -1.51 16 10 C 0.52 5.68 6.87 -10.99 -0.08 5.60 16 11 O -0.54 -7.88 15.52 5.55 0.09 -7.79 16 12 N -0.61 -6.05 2.98 -173.04 -0.52 -6.56 16 13 C 0.10 0.75 5.54 -3.71 -0.02 0.73 16 14 C -0.14 -1.10 6.08 -26.61 -0.16 -1.27 16 15 C -0.12 -1.24 4.96 -26.69 -0.13 -1.38 16 16 C -0.10 -1.15 2.32 -90.72 -0.21 -1.36 16 17 H 0.08 1.00 8.14 -51.93 -0.42 0.57 16 18 C -0.12 -1.84 4.80 -26.73 -0.13 -1.97 16 19 C 0.16 3.05 6.02 -4.04 -0.02 3.03 16 20 N -0.76 -18.43 5.41 -59.91 -0.32 -18.75 16 21 C -0.24 -7.05 10.47 -15.06 -0.16 -7.21 16 22 H 0.09 2.75 8.06 -52.49 -0.42 2.33 16 23 C 0.00 0.07 5.50 -17.43 -0.10 -0.02 16 24 N -0.94 -29.80 13.97 55.49 0.78 -29.02 16 25 Si 0.89 22.47 27.74 -169.99 -4.71 17.76 16 26 H -0.28 -7.12 7.11 56.52 0.40 -6.72 16 27 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 28 H -0.28 -6.64 6.52 56.52 0.37 -6.27 16 29 C 0.12 1.31 5.70 -3.94 -0.02 1.28 16 30 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 31 H 0.07 0.41 6.46 -51.93 -0.34 0.08 16 32 H 0.06 0.35 7.25 -51.93 -0.38 -0.02 16 33 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.10 0.86 8.07 -51.93 -0.42 0.44 16 35 H 0.15 0.88 8.06 -52.49 -0.42 0.46 16 36 H 0.15 0.69 8.06 -52.49 -0.42 0.26 16 37 H 0.20 0.62 8.06 -52.49 -0.42 0.19 16 38 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.08 0.47 5.32 -51.93 -0.28 0.19 16 40 H 0.08 0.51 8.14 -51.92 -0.42 0.08 16 41 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 43 H 0.08 0.92 6.50 -51.93 -0.34 0.58 16 44 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 45 H 0.06 0.92 8.14 -51.92 -0.42 0.49 16 46 H 0.03 0.55 6.54 -51.93 -0.34 0.21 16 47 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 48 H 0.36 8.53 5.53 -40.82 -0.23 8.30 16 49 H 0.26 7.84 8.31 -40.82 -0.34 7.50 16 50 H 0.09 1.22 7.00 -51.93 -0.36 0.85 16 51 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 LS Contribution 398.11 15.07 6.00 6.00 Total: -1.00 -34.97 398.11 -8.82 -43.80 By element: Atomic # 1 Polarization: 13.07 SS G_CDS: -8.52 Total: 4.55 kcal Atomic # 6 Polarization: -6.79 SS G_CDS: -1.67 Total: -8.46 kcal Atomic # 7 Polarization: -54.27 SS G_CDS: -0.06 Total: -54.34 kcal Atomic # 8 Polarization: -9.45 SS G_CDS: 0.15 Total: -9.31 kcal Atomic # 14 Polarization: 22.47 SS G_CDS: -4.71 Total: 17.76 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -34.97 -8.82 -43.80 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753557955.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.845 kcal (2) G-P(sol) polarization free energy of solvation -34.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.795 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds