Wall clock time and date at job start Tue Mar 31 2020 20:27:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08995 * 109.47052 * 2 1 4 4 C 1.52999 * 109.46929 * 119.99438 * 2 1 3 5 5 C 1.50696 * 109.47450 * 295.00186 * 4 2 1 6 6 C 1.34516 * 125.78894 * 89.99905 * 5 4 2 7 7 C 1.41392 * 106.83840 * 180.02562 * 6 5 4 8 8 C 1.34512 * 106.83988 * 0.22715 * 7 6 5 9 9 O 1.34298 * 108.42342 * 359.63471 * 8 7 6 10 10 C 1.50697 * 109.47025 * 239.99604 * 2 1 3 11 11 O 1.21287 * 119.99795 * 257.16992 * 10 2 1 12 12 N 1.34775 * 120.00361 * 77.17367 * 10 2 1 13 13 C 1.46924 * 120.62826 * 5.57001 * 12 10 2 14 14 C 1.53191 * 108.77455 * 126.36984 * 13 12 10 15 15 C 1.53036 * 109.31155 * 54.63833 * 14 13 12 16 16 C 1.53044 * 109.53678 * 298.63097 * 15 14 13 17 17 H 1.08999 * 109.49490 * 301.41707 * 16 15 14 18 18 C 1.52995 * 109.49759 * 181.35128 * 16 15 14 19 19 C 1.53003 * 109.47327 * 64.99948 * 18 16 15 20 20 N 1.46499 * 109.47229 * 179.97438 * 19 18 16 21 21 C 1.36935 * 119.99897 * 180.02562 * 20 19 18 22 22 H 1.07996 * 120.00100 * 359.97438 * 21 20 19 23 23 C 1.38816 * 119.99871 * 180.02562 * 21 20 19 24 24 N 1.31616 * 119.99882 * 179.97438 * 23 21 20 25 25 Si 1.86804 * 119.99960 * 359.97438 * 23 21 20 26 26 H 1.48496 * 109.46799 * 90.00596 * 25 23 21 27 27 H 1.48501 * 109.47006 * 210.00574 * 25 23 21 28 28 H 1.48501 * 109.46935 * 330.00426 * 25 23 21 29 29 C 1.46919 * 120.63375 * 185.29493 * 12 10 2 30 30 H 1.09000 * 109.46852 * 180.84375 * 1 2 3 31 31 H 1.08999 * 109.47169 * 300.84360 * 1 2 3 32 32 H 1.08997 * 109.46914 * 60.84842 * 1 2 3 33 33 H 1.09002 * 109.47179 * 175.00054 * 4 2 1 34 34 H 1.09000 * 109.47251 * 55.00345 * 4 2 1 35 35 H 1.07994 * 126.58132 * 359.97438 * 6 5 4 36 36 H 1.07993 * 126.57785 * 179.97438 * 7 6 5 37 37 H 1.08000 * 125.78709 * 179.77050 * 8 7 6 38 38 H 1.08996 * 109.58780 * 246.16200 * 13 12 10 39 39 H 1.09003 * 109.58645 * 6.44199 * 13 12 10 40 40 H 1.09011 * 109.49519 * 174.58850 * 14 13 12 41 41 H 1.09003 * 109.49971 * 294.64906 * 14 13 12 42 42 H 1.09001 * 109.46302 * 58.65437 * 15 14 13 43 43 H 1.09001 * 109.46022 * 178.62521 * 15 14 13 44 44 H 1.09005 * 109.47348 * 185.00018 * 18 16 15 45 45 H 1.09008 * 109.47406 * 305.00159 * 18 16 15 46 46 H 1.08993 * 109.47293 * 300.00258 * 19 18 16 47 47 H 1.08999 * 109.46630 * 60.00033 * 19 18 16 48 48 H 0.97000 * 119.99875 * 0.02562 * 20 19 18 49 49 H 0.96999 * 120.00146 * 179.97438 * 24 23 21 50 50 H 1.09002 * 109.58545 * 353.41066 * 29 12 10 51 51 H 1.08994 * 109.59163 * 113.83997 * 29 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 1.6413 0.0572 2.4766 6 6 0.5008 -0.1007 3.1721 7 6 0.5391 0.8278 4.2378 8 6 1.6984 1.5010 4.1267 9 8 2.3641 1.0266 3.0611 10 6 2.0324 -0.7105 -1.2304 11 8 2.4544 -1.8444 -1.1460 12 7 2.0127 -0.0859 -2.4245 13 6 1.6197 1.3263 -2.5242 14 6 2.7226 2.0943 -3.2595 15 6 2.9961 1.4214 -4.6065 16 6 3.4786 -0.0122 -4.3739 17 1 4.3810 0.0023 -3.7627 18 6 3.7839 -0.6730 -5.7196 19 6 4.9586 0.0460 -6.3860 20 7 5.2513 -0.5872 -7.6743 21 6 6.2704 -0.1111 -8.4553 22 1 6.8580 0.7313 -8.1217 23 6 6.5474 -0.7107 -9.6763 24 7 7.5265 -0.2528 -10.4272 25 14 5.5304 -2.1674 -10.2535 26 1 4.3679 -1.6795 -11.0383 27 1 6.3679 -3.0492 -11.1057 28 1 5.0469 -2.9314 -9.0755 29 6 2.3897 -0.8025 -3.6505 30 1 -0.3633 -1.0276 0.0151 31 1 -0.3633 0.5269 0.8823 32 1 -0.3633 0.5006 -0.8975 33 1 3.1264 -0.7994 1.2057 34 1 1.6054 -1.7197 1.2953 35 1 -0.2923 -0.8015 2.9573 36 1 -0.2190 0.9720 4.9933 37 1 2.0373 2.2878 4.7842 38 1 0.6854 1.4072 -3.0797 39 1 1.4875 1.7402 -1.5246 40 1 2.4014 3.1227 -3.4251 41 1 3.6320 2.0895 -2.6585 42 1 2.0800 1.4049 -5.1969 43 1 3.7634 1.9801 -5.1424 44 1 4.0420 -1.7200 -5.5601 45 1 2.9064 -0.6091 -6.3632 46 1 4.7006 1.0928 -6.5455 47 1 5.8360 -0.0180 -5.7425 48 1 4.7232 -1.3436 -7.9741 49 1 7.7204 -0.6719 -11.2802 50 1 2.7678 -1.7920 -3.3937 51 1 1.5195 -0.8987 -4.2997 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753557955.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:27:30 Heat of formation + Delta-G solvation = -46.314410 kcal Electronic energy + Delta-G solvation = -28676.638853 eV Core-core repulsion = 24769.435781 eV Total energy + Delta-G solvation = -3907.203072 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -43.48792 -41.49147 -39.14492 -37.08886 -36.26731 -34.97104 -33.76413 -33.35865 -32.63695 -31.00353 -29.38958 -27.59744 -26.69507 -25.81190 -24.11657 -23.33327 -22.73131 -22.57486 -21.39448 -20.96041 -19.83808 -19.53291 -18.63648 -17.78464 -17.26997 -16.80949 -16.62997 -16.45782 -16.03796 -15.95003 -15.39390 -15.26187 -15.14725 -14.94889 -14.76641 -14.52234 -14.30072 -13.96081 -13.74959 -13.70477 -13.58474 -13.44554 -13.29712 -13.08279 -12.97200 -12.82662 -12.49370 -12.40170 -12.29202 -12.15169 -12.03162 -11.94106 -11.83185 -11.66293 -11.55943 -11.27995 -10.95513 -10.79967 -10.69152 -9.64892 -9.33927 -9.30830 -8.04860 -5.38787 0.81213 1.36842 1.40699 1.48220 1.55482 1.72563 1.92407 2.19889 2.47062 3.26236 3.37658 3.53310 3.69992 3.73387 3.86638 3.89711 3.95993 4.01851 4.09019 4.17468 4.23421 4.30368 4.34859 4.40634 4.51709 4.55221 4.60971 4.61989 4.73376 4.74950 4.81942 4.84119 4.88073 4.89576 4.97957 4.99145 5.02455 5.08645 5.14002 5.21322 5.25846 5.27526 5.30210 5.43095 5.49557 5.53391 5.65968 5.73254 6.19261 6.25938 6.38733 7.05856 7.11093 7.82192 8.01905 9.16629 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.027989 B = 0.001882 C = 0.001859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1000.145769 B =14876.261710 C =15061.381248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.097 4.097 3 H 0.111 0.889 4 C -0.019 4.019 5 C -0.024 4.024 6 C -0.209 4.209 7 C -0.225 4.225 8 C -0.046 4.046 9 O -0.196 6.196 10 C 0.516 3.484 11 O -0.585 6.585 12 N -0.606 5.606 13 C 0.101 3.899 14 C -0.131 4.131 15 C -0.118 4.118 16 C -0.086 4.086 17 H 0.058 0.942 18 C -0.111 4.111 19 C 0.155 3.845 20 N -0.761 5.761 21 C -0.240 4.240 22 H 0.054 0.946 23 C -0.066 4.066 24 N -0.983 5.983 25 Si 0.959 3.041 26 H -0.274 1.274 27 H -0.295 1.295 28 H -0.253 1.253 29 C 0.120 3.880 30 H 0.058 0.942 31 H 0.081 0.919 32 H 0.076 0.924 33 H 0.070 0.930 34 H 0.099 0.901 35 H 0.159 0.841 36 H 0.167 0.833 37 H 0.232 0.768 38 H 0.091 0.909 39 H 0.106 0.894 40 H 0.099 0.901 41 H 0.057 0.943 42 H 0.076 0.924 43 H 0.060 0.940 44 H 0.059 0.941 45 H 0.076 0.924 46 H 0.033 0.967 47 H 0.012 0.988 48 H 0.366 0.634 49 H 0.259 0.741 50 H 0.070 0.930 51 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.641 5.635 31.047 38.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.118 4.118 3 H 0.129 0.871 4 C -0.057 4.057 5 C -0.073 4.073 6 C -0.228 4.228 7 C -0.244 4.244 8 C -0.113 4.113 9 O -0.093 6.093 10 C 0.305 3.695 11 O -0.465 6.465 12 N -0.338 5.338 13 C -0.020 4.020 14 C -0.169 4.169 15 C -0.155 4.155 16 C -0.106 4.106 17 H 0.076 0.924 18 C -0.150 4.150 19 C 0.029 3.971 20 N -0.407 5.407 21 C -0.371 4.371 22 H 0.072 0.928 23 C -0.257 4.257 24 N -0.634 5.634 25 Si 0.786 3.214 26 H -0.200 1.200 27 H -0.221 1.221 28 H -0.178 1.178 29 C -0.003 4.003 30 H 0.077 0.923 31 H 0.100 0.900 32 H 0.095 0.905 33 H 0.089 0.911 34 H 0.118 0.882 35 H 0.176 0.824 36 H 0.184 0.816 37 H 0.248 0.752 38 H 0.109 0.891 39 H 0.124 0.876 40 H 0.117 0.883 41 H 0.076 0.924 42 H 0.095 0.905 43 H 0.079 0.921 44 H 0.078 0.922 45 H 0.095 0.905 46 H 0.051 0.949 47 H 0.030 0.970 48 H 0.199 0.801 49 H 0.067 0.933 50 H 0.089 0.911 51 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -21.986 5.292 30.947 38.329 hybrid contribution 0.253 -0.923 -0.778 1.233 sum -21.734 4.369 30.169 37.438 Atomic orbital electron populations 1.21826 0.90500 1.03225 1.04153 1.21268 0.99443 1.00842 0.90266 0.87067 1.19842 1.01971 0.97148 0.86713 1.22356 0.92794 0.93754 0.98420 1.21865 0.99283 1.03938 0.97702 1.22172 1.00340 0.99686 1.02210 1.24750 0.93457 1.02427 0.90634 1.84026 1.45099 1.43387 1.36769 1.21037 0.77089 0.86174 0.85165 1.90691 1.48624 1.20969 1.86224 1.48191 1.66195 1.13066 1.06327 1.22113 0.98271 0.78477 1.03138 1.21921 0.98977 1.00303 0.95746 1.21644 1.01909 0.94105 0.97868 1.21222 0.98082 0.96283 0.94989 0.92355 1.21621 0.98017 0.99340 0.95993 1.20815 0.95440 0.95834 0.84975 1.42759 1.38987 1.38295 1.20625 1.19055 1.07693 1.11430 0.98889 0.92799 1.25572 0.99972 1.02829 0.97328 1.69891 1.34267 1.45409 1.13813 0.85348 0.78230 0.79421 0.78423 1.19952 1.22146 1.17771 1.21472 0.97919 0.95698 0.85223 0.92275 0.89969 0.90508 0.91107 0.88236 0.82369 0.81586 0.75174 0.89092 0.87602 0.88287 0.92426 0.90541 0.92147 0.92200 0.90514 0.94907 0.97023 0.80059 0.93265 0.91139 0.89838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.40 8.70 71.98 0.63 -0.78 16 2 C -0.10 -1.38 1.86 -11.54 -0.02 -1.40 16 3 H 0.11 1.28 6.46 -2.39 -0.02 1.26 16 4 C -0.02 -0.32 4.57 29.85 0.14 -0.18 16 5 C -0.02 -0.37 6.05 24.83 0.15 -0.22 16 6 C -0.21 -2.79 9.43 22.19 0.21 -2.58 16 7 C -0.23 -2.54 10.91 22.19 0.24 -2.30 16 8 C -0.05 -0.52 12.09 66.97 0.81 0.29 16 9 O -0.20 -3.31 10.65 -2.51 -0.03 -3.33 16 10 C 0.52 10.89 6.87 87.66 0.60 11.49 16 11 O -0.58 -17.46 15.52 -3.05 -0.05 -17.51 16 12 N -0.61 -11.06 2.98 -819.76 -2.44 -13.51 16 13 C 0.10 1.15 5.54 86.36 0.48 1.63 16 14 C -0.13 -1.80 6.08 30.67 0.19 -1.61 16 15 C -0.12 -2.26 4.96 30.62 0.15 -2.11 16 16 C -0.09 -2.00 2.32 -10.86 -0.03 -2.03 16 17 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 18 C -0.11 -3.20 4.80 30.59 0.15 -3.05 16 19 C 0.16 5.99 6.02 86.38 0.52 6.51 16 20 N -0.76 -36.73 5.41 -343.46 -1.86 -38.58 16 21 C -0.24 -14.15 10.47 84.03 0.88 -13.27 16 22 H 0.05 3.48 8.06 -2.91 -0.02 3.46 16 23 C -0.07 -3.96 5.50 84.86 0.47 -3.49 16 24 N -0.98 -64.17 13.97 21.65 0.30 -63.86 16 25 Si 0.96 46.23 27.74 68.60 1.90 48.13 16 26 H -0.27 -12.68 7.11 99.48 0.71 -11.97 16 27 H -0.29 -14.34 7.11 99.48 0.71 -13.63 16 28 H -0.25 -11.08 6.52 99.48 0.65 -10.43 16 29 C 0.12 2.57 5.70 86.22 0.49 3.06 16 30 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 31 H 0.08 0.71 6.46 -2.39 -0.02 0.70 16 32 H 0.08 0.59 7.25 -2.39 -0.02 0.57 16 33 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 34 H 0.10 1.69 8.07 -2.39 -0.02 1.67 16 35 H 0.16 1.63 8.06 -2.91 -0.02 1.61 16 36 H 0.17 1.11 8.06 -2.91 -0.02 1.09 16 37 H 0.23 0.79 8.06 -2.91 -0.02 0.76 16 38 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 39 H 0.11 0.78 5.32 -2.39 -0.01 0.77 16 40 H 0.10 0.97 8.14 -2.38 -0.02 0.95 16 41 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 42 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 43 H 0.06 1.37 6.50 -2.39 -0.02 1.36 16 44 H 0.06 1.78 8.14 -2.38 -0.02 1.76 16 45 H 0.08 2.03 8.14 -2.38 -0.02 2.01 16 46 H 0.03 1.26 6.54 -2.39 -0.02 1.24 16 47 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 48 H 0.37 16.70 5.53 -92.71 -0.51 16.19 16 49 H 0.26 16.00 8.31 -92.71 -0.77 15.23 16 50 H 0.07 1.86 7.00 -2.39 -0.02 1.84 16 51 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 Total: -1.00 -78.03 398.11 4.23 -73.81 By element: Atomic # 1 Polarization: 24.55 SS G_CDS: 0.34 Total: 24.89 kcal Atomic # 6 Polarization: -16.09 SS G_CDS: 6.05 Total: -10.04 kcal Atomic # 7 Polarization: -111.96 SS G_CDS: -4.00 Total: -115.95 kcal Atomic # 8 Polarization: -20.77 SS G_CDS: -0.07 Total: -20.84 kcal Atomic # 14 Polarization: 46.23 SS G_CDS: 1.90 Total: 48.13 kcal Total: -78.03 4.23 -73.81 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753557955.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.491 kcal (2) G-P(sol) polarization free energy of solvation -78.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.805 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds