Wall clock time and date at job start Tue Mar 31 2020 19:41:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.35897 * 116.99833 * 2 1 4 4 C 1.38757 * 120.05588 * 0.02562 * 3 2 1 5 5 C 1.38124 * 119.94424 * 180.02562 * 4 3 2 6 6 C 1.38287 * 120.05462 * 0.02562 * 5 4 3 7 7 C 1.38244 * 120.11519 * 359.97438 * 6 5 4 8 8 C 1.50696 * 119.97481 * 179.97438 * 7 6 5 9 9 H 1.08999 * 109.47059 * 179.97438 * 8 7 6 10 10 C 1.52998 * 109.47557 * 300.00162 * 8 7 6 11 11 C 1.50700 * 109.47012 * 60.00368 * 8 7 6 12 12 O 1.21280 * 120.00133 * 359.97438 * 11 8 7 13 13 N 1.34775 * 120.00028 * 179.97438 * 11 8 7 14 14 C 1.46502 * 119.99947 * 179.97438 * 13 11 8 15 15 C 1.53004 * 109.46925 * 180.02562 * 14 13 11 16 16 H 1.08995 * 109.47216 * 295.00133 * 15 14 13 17 17 N 1.46498 * 109.47065 * 55.00022 * 15 14 13 18 18 C 1.36943 * 119.99752 * 204.72207 * 17 15 14 19 19 H 1.08002 * 119.99793 * 0.27665 * 18 17 15 20 20 C 1.38811 * 120.00012 * 180.27737 * 18 17 15 21 21 N 1.31624 * 119.99698 * 0.02562 * 20 18 17 22 22 Si 1.86795 * 120.00072 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.47294 * 90.00155 * 22 20 18 24 24 H 1.48499 * 109.47218 * 210.00015 * 22 20 18 25 25 H 1.48496 * 109.47166 * 329.99846 * 22 20 18 26 26 C 1.52999 * 109.47083 * 175.00128 * 15 14 13 27 27 C 1.53003 * 109.47010 * 59.99777 * 26 15 14 28 28 C 1.52997 * 109.47278 * 179.97438 * 26 15 14 29 29 C 1.38176 * 120.05168 * 0.23592 * 7 6 5 30 30 H 1.08998 * 109.47209 * 59.99539 * 1 2 3 31 31 H 1.09001 * 109.46820 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.46586 * 299.99658 * 1 2 3 33 33 H 1.07995 * 120.02938 * 359.97438 * 4 3 2 34 34 H 1.08000 * 119.97367 * 179.97438 * 5 4 3 35 35 H 1.07995 * 119.94467 * 179.97438 * 6 5 4 36 36 H 1.08996 * 109.47454 * 179.97438 * 10 8 7 37 37 H 1.09005 * 109.46765 * 300.00647 * 10 8 7 38 38 H 1.09001 * 109.46707 * 59.99615 * 10 8 7 39 39 H 0.96997 * 119.99994 * 0.02562 * 13 11 8 40 40 H 1.08997 * 109.46993 * 60.00870 * 14 13 11 41 41 H 1.08999 * 109.47017 * 300.00291 * 14 13 11 42 42 H 0.97001 * 120.00384 * 25.00562 * 17 15 14 43 43 H 0.96999 * 119.99739 * 180.02562 * 21 20 18 44 44 H 1.08995 * 109.47098 * 300.00077 * 26 15 14 45 45 H 1.09003 * 109.47062 * 60.00488 * 27 26 15 46 46 H 1.08996 * 109.47077 * 179.97438 * 27 26 15 47 47 H 1.08996 * 109.47248 * 300.00159 * 27 26 15 48 48 H 1.09003 * 109.47146 * 59.99973 * 28 26 15 49 49 H 1.08996 * 109.47253 * 180.02562 * 28 26 15 50 50 H 1.08995 * 109.47275 * 300.00159 * 28 26 15 51 51 H 1.08003 * 120.02426 * 179.73729 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3753 0.0005 5 6 1.9208 3.6048 0.0000 6 6 3.3019 3.6758 -0.0016 7 6 4.0560 2.5172 -0.0021 8 6 5.5608 2.5983 -0.0045 9 1 5.9789 1.5917 -0.0041 10 6 6.0294 3.3453 -1.2548 11 6 6.0260 3.3353 1.2249 12 8 5.2154 3.7539 2.0241 13 7 7.3428 3.5292 1.4364 14 6 7.7951 4.2462 2.6313 15 6 9.3229 4.3284 2.6290 16 1 9.7408 3.3258 2.7188 17 7 9.7773 4.9364 1.3760 18 6 11.0364 4.6748 0.9052 19 1 11.6927 4.0168 1.4553 20 6 11.4690 5.2555 -0.2791 21 7 10.6693 6.0578 -0.9492 22 14 13.1862 4.8981 -0.9217 23 1 13.1448 3.7088 -1.8101 24 1 13.6823 6.0703 -1.6866 25 1 14.0966 4.6312 0.2207 26 6 9.7894 5.1830 3.8092 27 6 9.3147 4.5480 5.1178 28 6 11.3172 5.2648 3.8073 29 6 3.4311 1.2848 -0.0060 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3632 0.5138 0.8900 33 1 0.2128 2.3204 0.0005 34 1 1.3339 4.5114 0.0000 35 1 3.7921 4.6381 -0.0024 36 1 7.1178 3.4044 -1.2562 37 1 5.6928 2.8122 -2.1440 38 1 5.6112 4.3519 -1.2546 39 1 7.9911 3.1948 0.7971 40 1 7.4609 3.7145 3.5222 41 1 7.3773 5.2529 2.6308 42 1 9.1879 5.5275 0.8819 43 1 10.9715 6.4633 -1.7770 44 1 9.3714 6.1857 3.7194 45 1 9.7328 3.5454 5.2077 46 1 9.6475 5.1566 5.9586 47 1 8.2264 4.4894 5.1194 48 1 11.6557 5.7169 2.8750 49 1 11.6495 5.8732 4.6483 50 1 11.7348 4.2620 3.8973 51 1 4.0207 0.3800 -0.0107 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753845782.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:41:46 Heat of formation + Delta-G solvation = -54.651837 kcal Electronic energy + Delta-G solvation = -29136.971462 eV Core-core repulsion = 25229.406852 eV Total energy + Delta-G solvation = -3907.564610 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -40.44474 -39.47027 -37.72563 -37.00811 -33.99875 -33.61213 -33.12853 -30.82118 -30.39038 -29.18351 -27.83731 -27.46405 -26.11188 -24.65278 -23.63865 -22.60265 -22.13248 -21.12688 -19.87267 -19.17415 -17.92625 -17.27374 -16.70400 -16.21043 -15.90318 -15.77063 -15.75150 -15.23383 -14.84714 -14.25719 -14.08282 -13.83985 -13.61985 -13.49781 -13.41852 -13.23478 -12.87069 -12.79374 -12.42754 -12.25485 -12.05029 -12.02598 -12.01676 -11.62845 -11.43435 -11.32890 -11.10215 -11.00782 -10.95139 -10.82159 -10.77093 -10.62869 -10.30747 -10.10627 -9.95786 -9.56163 -9.42992 -8.94007 -8.82389 -8.56338 -8.18036 -7.04373 -5.83798 -3.12736 1.28417 1.48664 2.98246 3.10992 3.37701 3.44498 3.45681 3.53860 3.89964 4.52255 4.58097 4.70367 4.89853 4.91177 4.95036 5.06030 5.19673 5.22309 5.28248 5.34078 5.38641 5.40393 5.48547 5.54008 5.62504 5.63729 5.75838 5.87709 5.89501 5.92815 6.00778 6.03444 6.18817 6.24142 6.24974 6.29324 6.37975 6.46084 6.46784 6.54265 6.63141 6.65045 6.68941 6.73144 6.96117 7.07465 7.29288 7.31178 7.65179 7.97941 8.33628 8.61724 9.45774 10.00519 10.36740 11.37884 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.014661 B = 0.002641 C = 0.002378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1909.382326 B =10598.080392 C =11770.274038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.320 6.320 3 C 0.119 3.881 4 C -0.210 4.210 5 C -0.084 4.084 6 C -0.117 4.117 7 C -0.021 4.021 8 C -0.073 4.073 9 H 0.103 0.897 10 C -0.142 4.142 11 C 0.515 3.485 12 O -0.546 6.546 13 N -0.711 5.711 14 C 0.115 3.885 15 C 0.170 3.830 16 H 0.053 0.947 17 N -0.721 5.721 18 C -0.236 4.236 19 H 0.072 0.928 20 C -0.010 4.010 21 N -0.929 5.929 22 Si 0.902 3.098 23 H -0.290 1.290 24 H -0.293 1.293 25 H -0.282 1.282 26 C -0.109 4.109 27 C -0.149 4.149 28 C -0.139 4.139 29 C -0.145 4.145 30 H 0.053 0.947 31 H 0.097 0.903 32 H 0.054 0.946 33 H 0.124 0.876 34 H 0.123 0.877 35 H 0.123 0.877 36 H 0.076 0.924 37 H 0.066 0.934 38 H 0.063 0.937 39 H 0.410 0.590 40 H 0.065 0.935 41 H 0.062 0.938 42 H 0.385 0.615 43 H 0.255 0.745 44 H 0.062 0.938 45 H 0.049 0.951 46 H 0.045 0.955 47 H 0.051 0.949 48 H 0.086 0.914 49 H 0.031 0.969 50 H 0.040 0.960 51 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.286 -8.690 2.347 18.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.234 6.234 3 C 0.075 3.925 4 C -0.229 4.229 5 C -0.102 4.102 6 C -0.135 4.135 7 C -0.021 4.021 8 C -0.094 4.094 9 H 0.121 0.879 10 C -0.199 4.199 11 C 0.301 3.699 12 O -0.424 6.424 13 N -0.362 5.362 14 C -0.010 4.010 15 C 0.059 3.941 16 H 0.071 0.929 17 N -0.362 5.362 18 C -0.367 4.367 19 H 0.090 0.910 20 C -0.207 4.207 21 N -0.577 5.577 22 Si 0.733 3.267 23 H -0.218 1.218 24 H -0.219 1.219 25 H -0.208 1.208 26 C -0.131 4.131 27 C -0.207 4.207 28 C -0.196 4.196 29 C -0.163 4.163 30 H 0.072 0.928 31 H 0.115 0.885 32 H 0.072 0.928 33 H 0.141 0.859 34 H 0.141 0.859 35 H 0.141 0.859 36 H 0.095 0.905 37 H 0.085 0.915 38 H 0.083 0.917 39 H 0.246 0.754 40 H 0.083 0.917 41 H 0.080 0.920 42 H 0.219 0.781 43 H 0.065 0.935 44 H 0.081 0.919 45 H 0.068 0.932 46 H 0.064 0.936 47 H 0.070 0.930 48 H 0.105 0.895 49 H 0.050 0.950 50 H 0.059 0.941 51 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -16.584 -8.635 2.870 18.916 hybrid contribution 0.867 0.119 -0.746 1.150 sum -15.717 -8.516 2.124 18.001 Atomic orbital electron populations 1.23012 0.78692 1.03661 1.01258 1.86051 1.21134 1.27139 1.89074 1.18879 0.92144 0.84008 0.97517 1.21160 0.99663 0.92487 1.09605 1.20880 0.94555 0.96855 0.97895 1.20869 0.93421 0.98291 1.00921 1.19125 0.93723 0.92428 0.96851 1.20310 0.92399 1.01525 0.95187 0.87866 1.21806 1.02703 1.00387 0.95009 1.20310 0.82644 0.80016 0.86966 1.90683 1.53548 1.51155 1.46975 1.45967 1.06890 1.57433 1.25925 1.21716 0.95959 0.96461 0.86853 1.20547 0.89742 0.96066 0.87722 0.92905 1.42459 1.15539 1.56288 1.21924 1.19190 0.90978 1.23037 1.03476 0.90959 1.24717 0.98002 0.99959 0.98010 1.69659 1.35631 1.34835 1.17526 0.86281 0.84536 0.77170 0.78736 1.21782 1.21911 1.20793 1.21728 0.97038 0.99883 0.94460 1.21942 1.00560 1.00457 0.97733 1.21820 0.94905 1.00542 1.02373 1.20226 0.91362 0.97872 1.06867 0.92792 0.88452 0.92764 0.85857 0.85916 0.85908 0.90474 0.91518 0.91744 0.75355 0.91714 0.92006 0.78091 0.93513 0.91929 0.93213 0.93599 0.93047 0.89475 0.95040 0.94090 0.85362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 9.81 101.05 0.99 1.20 16 2 O -0.32 -3.69 10.50 -19.42 -0.20 -3.89 16 3 C 0.12 1.50 6.69 -39.22 -0.26 1.24 16 4 C -0.21 -2.41 9.04 -39.43 -0.36 -2.77 16 5 C -0.08 -1.01 10.04 -39.61 -0.40 -1.41 16 6 C -0.12 -1.61 7.93 -39.56 -0.31 -1.92 16 7 C -0.02 -0.28 4.40 -104.64 -0.46 -0.74 16 8 C -0.07 -0.97 2.90 -92.93 -0.27 -1.24 16 9 H 0.10 1.18 7.87 -51.93 -0.41 0.77 16 10 C -0.14 -1.80 8.90 37.16 0.33 -1.47 16 11 C 0.52 8.36 7.02 -10.99 -0.08 8.28 16 12 O -0.55 -10.46 15.10 5.56 0.08 -10.38 16 13 N -0.71 -11.47 5.28 -60.29 -0.32 -11.79 16 14 C 0.11 1.92 4.73 -4.04 -0.02 1.90 16 15 C 0.17 3.05 2.18 -67.93 -0.15 2.90 16 16 H 0.05 0.97 8.08 -51.93 -0.42 0.55 16 17 N -0.72 -15.83 4.45 -53.43 -0.24 -16.07 16 18 C -0.24 -5.80 7.55 -15.06 -0.11 -5.91 16 19 H 0.07 1.75 7.38 -52.49 -0.39 1.37 16 20 C -0.01 -0.28 5.50 -17.43 -0.10 -0.37 16 21 N -0.93 -25.97 13.06 55.49 0.72 -25.24 16 22 Si 0.90 21.10 29.55 -169.99 -5.02 16.08 16 23 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 24 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 25 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 26 C -0.11 -1.84 2.69 -90.62 -0.24 -2.09 16 27 C -0.15 -2.10 8.84 37.16 0.33 -1.77 16 28 C -0.14 -2.48 8.25 37.16 0.31 -2.17 16 29 C -0.14 -1.90 9.61 -39.43 -0.38 -2.28 16 30 H 0.05 0.33 7.66 -51.93 -0.40 -0.07 16 31 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.05 0.35 7.66 -51.93 -0.40 -0.04 16 33 H 0.12 1.09 6.30 -52.49 -0.33 0.76 16 34 H 0.12 1.19 8.06 -52.49 -0.42 0.77 16 35 H 0.12 1.74 7.51 -52.49 -0.39 1.35 16 36 H 0.08 1.05 7.56 -51.93 -0.39 0.66 16 37 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.06 0.85 7.39 -51.93 -0.38 0.47 16 39 H 0.41 6.63 7.56 -40.82 -0.31 6.32 16 40 H 0.06 1.04 6.71 -51.93 -0.35 0.69 16 41 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 42 H 0.39 9.29 7.80 -40.82 -0.32 8.97 16 43 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 44 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 45 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 46 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 47 H 0.05 0.69 6.54 -51.93 -0.34 0.35 16 48 H 0.09 1.84 5.99 -51.93 -0.31 1.53 16 49 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 50 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 51 H 0.13 1.50 7.94 -52.48 -0.42 1.09 16 LS Contribution 406.82 15.07 6.13 6.13 Total: -1.00 -29.60 406.82 -8.52 -38.12 By element: Atomic # 1 Polarization: 24.14 SS G_CDS: -8.50 Total: 15.65 kcal Atomic # 6 Polarization: -7.43 SS G_CDS: -1.18 Total: -8.61 kcal Atomic # 7 Polarization: -53.27 SS G_CDS: 0.17 Total: -53.10 kcal Atomic # 8 Polarization: -14.15 SS G_CDS: -0.12 Total: -14.27 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -29.60 -8.52 -38.12 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753845782.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.529 kcal (2) G-P(sol) polarization free energy of solvation -29.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.123 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds