Wall clock time and date at job start Tue Mar 31 2020 19:41:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.35897 * 116.99833 * 2 1 4 4 C 1.38757 * 120.05588 * 0.02562 * 3 2 1 5 5 C 1.38124 * 119.94424 * 180.02562 * 4 3 2 6 6 C 1.38287 * 120.05462 * 0.02562 * 5 4 3 7 7 C 1.38244 * 120.11519 * 359.97438 * 6 5 4 8 8 C 1.50696 * 119.97481 * 179.97438 * 7 6 5 9 9 H 1.08999 * 109.47059 * 179.97438 * 8 7 6 10 10 C 1.52998 * 109.47557 * 300.00162 * 8 7 6 11 11 C 1.50700 * 109.47012 * 60.00368 * 8 7 6 12 12 O 1.21280 * 120.00133 * 359.97438 * 11 8 7 13 13 N 1.34775 * 120.00028 * 179.97438 * 11 8 7 14 14 C 1.46502 * 119.99947 * 179.97438 * 13 11 8 15 15 C 1.53004 * 109.46925 * 180.02562 * 14 13 11 16 16 H 1.08995 * 109.47216 * 295.00133 * 15 14 13 17 17 N 1.46498 * 109.47065 * 55.00022 * 15 14 13 18 18 C 1.36943 * 119.99752 * 204.72207 * 17 15 14 19 19 H 1.08002 * 119.99793 * 0.27665 * 18 17 15 20 20 C 1.38811 * 120.00012 * 180.27737 * 18 17 15 21 21 N 1.31624 * 119.99698 * 0.02562 * 20 18 17 22 22 Si 1.86795 * 120.00072 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.47294 * 90.00155 * 22 20 18 24 24 H 1.48499 * 109.47218 * 210.00015 * 22 20 18 25 25 H 1.48496 * 109.47166 * 329.99846 * 22 20 18 26 26 C 1.52999 * 109.47083 * 175.00128 * 15 14 13 27 27 C 1.53003 * 109.47010 * 59.99777 * 26 15 14 28 28 C 1.52997 * 109.47278 * 179.97438 * 26 15 14 29 29 C 1.38176 * 120.05168 * 0.23592 * 7 6 5 30 30 H 1.08998 * 109.47209 * 59.99539 * 1 2 3 31 31 H 1.09001 * 109.46820 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.46586 * 299.99658 * 1 2 3 33 33 H 1.07995 * 120.02938 * 359.97438 * 4 3 2 34 34 H 1.08000 * 119.97367 * 179.97438 * 5 4 3 35 35 H 1.07995 * 119.94467 * 179.97438 * 6 5 4 36 36 H 1.08996 * 109.47454 * 179.97438 * 10 8 7 37 37 H 1.09005 * 109.46765 * 300.00647 * 10 8 7 38 38 H 1.09001 * 109.46707 * 59.99615 * 10 8 7 39 39 H 0.96997 * 119.99994 * 0.02562 * 13 11 8 40 40 H 1.08997 * 109.46993 * 60.00870 * 14 13 11 41 41 H 1.08999 * 109.47017 * 300.00291 * 14 13 11 42 42 H 0.97001 * 120.00384 * 25.00562 * 17 15 14 43 43 H 0.96999 * 119.99739 * 180.02562 * 21 20 18 44 44 H 1.08995 * 109.47098 * 300.00077 * 26 15 14 45 45 H 1.09003 * 109.47062 * 60.00488 * 27 26 15 46 46 H 1.08996 * 109.47077 * 179.97438 * 27 26 15 47 47 H 1.08996 * 109.47248 * 300.00159 * 27 26 15 48 48 H 1.09003 * 109.47146 * 59.99973 * 28 26 15 49 49 H 1.08996 * 109.47253 * 180.02562 * 28 26 15 50 50 H 1.08995 * 109.47275 * 300.00159 * 28 26 15 51 51 H 1.08003 * 120.02426 * 179.73729 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3753 0.0005 5 6 1.9208 3.6048 0.0000 6 6 3.3019 3.6758 -0.0016 7 6 4.0560 2.5172 -0.0021 8 6 5.5608 2.5983 -0.0045 9 1 5.9789 1.5917 -0.0041 10 6 6.0294 3.3453 -1.2548 11 6 6.0260 3.3353 1.2249 12 8 5.2154 3.7539 2.0241 13 7 7.3428 3.5292 1.4364 14 6 7.7951 4.2462 2.6313 15 6 9.3229 4.3284 2.6290 16 1 9.7408 3.3258 2.7188 17 7 9.7773 4.9364 1.3760 18 6 11.0364 4.6748 0.9052 19 1 11.6927 4.0168 1.4553 20 6 11.4690 5.2555 -0.2791 21 7 10.6693 6.0578 -0.9492 22 14 13.1862 4.8981 -0.9217 23 1 13.1448 3.7088 -1.8101 24 1 13.6823 6.0703 -1.6866 25 1 14.0966 4.6312 0.2207 26 6 9.7894 5.1830 3.8092 27 6 9.3147 4.5480 5.1178 28 6 11.3172 5.2648 3.8073 29 6 3.4311 1.2848 -0.0060 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3632 0.5138 0.8900 33 1 0.2128 2.3204 0.0005 34 1 1.3339 4.5114 0.0000 35 1 3.7921 4.6381 -0.0024 36 1 7.1178 3.4044 -1.2562 37 1 5.6928 2.8122 -2.1440 38 1 5.6112 4.3519 -1.2546 39 1 7.9911 3.1948 0.7971 40 1 7.4609 3.7145 3.5222 41 1 7.3773 5.2529 2.6308 42 1 9.1879 5.5275 0.8819 43 1 10.9715 6.4633 -1.7770 44 1 9.3714 6.1857 3.7194 45 1 9.7328 3.5454 5.2077 46 1 9.6475 5.1566 5.9586 47 1 8.2264 4.4894 5.1194 48 1 11.6557 5.7169 2.8750 49 1 11.6495 5.8732 4.6483 50 1 11.7348 4.2620 3.8973 51 1 4.0207 0.3800 -0.0107 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753845782.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:41:45 Heat of formation + Delta-G solvation = -71.956022 kcal Electronic energy + Delta-G solvation = -29137.721828 eV Core-core repulsion = 25229.406852 eV Total energy + Delta-G solvation = -3908.314976 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.47975 -40.59135 -38.96012 -38.21915 -35.31298 -34.94474 -34.71776 -32.15245 -31.69384 -30.27287 -29.25024 -28.12308 -27.45877 -25.98845 -25.18541 -23.56503 -23.48604 -22.29564 -21.16353 -20.52128 -19.24378 -18.70312 -17.91803 -17.12705 -17.07703 -16.92545 -16.74073 -16.59050 -16.14009 -15.69627 -15.37275 -15.27430 -14.93260 -14.84483 -14.53172 -14.34600 -14.21995 -13.85421 -13.63637 -13.41660 -13.24263 -13.17150 -12.94063 -12.88981 -12.84009 -12.68577 -12.46280 -12.35409 -12.29474 -12.23637 -12.00123 -11.88872 -11.73809 -11.66111 -11.42876 -11.26473 -10.86566 -10.68558 -9.94806 -9.79839 -9.11187 -8.92414 -7.84505 -5.11096 0.33085 0.52246 1.51278 1.53393 1.59487 1.68804 2.24600 2.43918 2.61943 2.86644 3.48522 3.56795 3.80955 3.89299 3.94523 3.97090 4.13354 4.14522 4.23641 4.31437 4.34035 4.35686 4.40931 4.41734 4.48693 4.57555 4.64517 4.68534 4.75119 4.80319 4.85883 4.90043 4.93755 5.00000 5.07108 5.09793 5.16677 5.24421 5.28157 5.32124 5.34880 5.49662 5.57188 5.63923 5.66996 5.67799 5.78699 5.80206 6.35535 6.47826 6.64920 7.30015 7.43923 8.14968 8.40673 9.38078 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.014661 B = 0.002641 C = 0.002378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1909.382326 B =10598.080392 C =11770.274038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.336 6.336 3 C 0.113 3.887 4 C -0.208 4.208 5 C -0.087 4.087 6 C -0.138 4.138 7 C -0.033 4.033 8 C -0.065 4.065 9 H 0.124 0.876 10 C -0.134 4.134 11 C 0.515 3.485 12 O -0.576 6.576 13 N -0.709 5.709 14 C 0.124 3.876 15 C 0.173 3.827 16 H 0.057 0.943 17 N -0.726 5.726 18 C -0.213 4.213 19 H 0.078 0.922 20 C -0.070 4.070 21 N -0.965 5.965 22 Si 0.955 3.045 23 H -0.290 1.290 24 H -0.306 1.306 25 H -0.273 1.273 26 C -0.106 4.106 27 C -0.141 4.141 28 C -0.134 4.134 29 C -0.159 4.159 30 H 0.066 0.934 31 H 0.119 0.881 32 H 0.062 0.938 33 H 0.152 0.848 34 H 0.144 0.856 35 H 0.109 0.891 36 H 0.065 0.935 37 H 0.084 0.916 38 H 0.052 0.948 39 H 0.410 0.590 40 H 0.078 0.922 41 H 0.046 0.954 42 H 0.373 0.627 43 H 0.246 0.754 44 H 0.049 0.951 45 H 0.059 0.941 46 H 0.059 0.941 47 H 0.057 0.943 48 H 0.050 0.950 49 H 0.049 0.951 50 H 0.046 0.954 51 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.294 -10.387 3.379 20.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.250 6.250 3 C 0.068 3.932 4 C -0.227 4.227 5 C -0.105 4.105 6 C -0.157 4.157 7 C -0.033 4.033 8 C -0.086 4.086 9 H 0.142 0.858 10 C -0.192 4.192 11 C 0.302 3.698 12 O -0.456 6.456 13 N -0.360 5.360 14 C -0.001 4.001 15 C 0.064 3.936 16 H 0.075 0.925 17 N -0.365 5.365 18 C -0.344 4.344 19 H 0.096 0.904 20 C -0.262 4.262 21 N -0.616 5.616 22 Si 0.787 3.213 23 H -0.217 1.217 24 H -0.233 1.233 25 H -0.198 1.198 26 C -0.128 4.128 27 C -0.198 4.198 28 C -0.192 4.192 29 C -0.177 4.177 30 H 0.084 0.916 31 H 0.137 0.863 32 H 0.080 0.920 33 H 0.169 0.831 34 H 0.162 0.838 35 H 0.127 0.873 36 H 0.084 0.916 37 H 0.103 0.897 38 H 0.071 0.929 39 H 0.247 0.753 40 H 0.096 0.904 41 H 0.065 0.935 42 H 0.205 0.795 43 H 0.055 0.945 44 H 0.068 0.932 45 H 0.078 0.922 46 H 0.078 0.922 47 H 0.076 0.924 48 H 0.069 0.931 49 H 0.068 0.932 50 H 0.065 0.935 51 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -17.586 -10.369 3.944 20.793 hybrid contribution 1.074 0.600 -0.968 1.565 sum -16.511 -9.770 2.976 19.415 Atomic orbital electron populations 1.23337 0.76495 1.05534 1.02216 1.86035 1.23447 1.26645 1.88852 1.19051 0.92246 0.84872 0.97055 1.21462 1.01098 0.91738 1.08388 1.21161 0.94054 0.98180 0.97128 1.20927 0.94501 0.97843 1.02419 1.19164 0.93682 0.92793 0.97685 1.20292 0.92649 1.02052 0.93629 0.85791 1.21738 1.01744 1.00043 0.95652 1.20804 0.82124 0.79496 0.87416 1.90661 1.54178 1.52480 1.48287 1.45969 1.07102 1.57210 1.25749 1.21583 0.94813 0.95989 0.87708 1.20672 0.90500 0.95943 0.86505 0.92528 1.42555 1.14616 1.56133 1.23227 1.19441 0.91532 1.21020 1.02453 0.90407 1.25311 1.00817 1.01067 0.99037 1.69798 1.37035 1.36868 1.17900 0.85400 0.81552 0.76239 0.78137 1.21729 1.23326 1.19847 1.21629 0.96484 0.99174 0.95531 1.21849 1.00952 1.00893 0.96140 1.21730 0.95398 1.00851 1.01183 1.20393 0.92164 0.97900 1.07253 0.91582 0.86300 0.91958 0.83087 0.83847 0.87284 0.91615 0.89671 0.92882 0.75294 0.90371 0.93524 0.79515 0.94485 0.93244 0.92220 0.92158 0.92448 0.93136 0.93160 0.93470 0.84459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 9.81 113.37 1.11 1.33 16 2 O -0.34 -7.11 10.50 -92.39 -0.97 -8.08 16 3 C 0.11 2.69 6.69 22.51 0.15 2.84 16 4 C -0.21 -4.38 9.04 22.37 0.20 -4.18 16 5 C -0.09 -2.02 10.04 22.25 0.22 -1.79 16 6 C -0.14 -3.84 7.93 22.28 0.18 -3.67 16 7 C -0.03 -0.89 4.40 -19.88 -0.09 -0.98 16 8 C -0.07 -1.72 2.90 -12.29 -0.04 -1.75 16 9 H 0.12 2.71 7.87 -2.39 -0.02 2.69 16 10 C -0.13 -3.44 8.90 71.98 0.64 -2.80 16 11 C 0.51 16.76 7.02 87.66 0.62 17.37 16 12 O -0.58 -22.28 15.10 -3.03 -0.05 -22.32 16 13 N -0.71 -22.89 5.28 -463.06 -2.45 -25.34 16 14 C 0.12 4.09 4.73 86.38 0.41 4.49 16 15 C 0.17 6.08 2.18 44.99 0.10 6.18 16 16 H 0.06 1.99 8.08 -2.39 -0.02 1.97 16 17 N -0.73 -32.09 4.45 -322.94 -1.44 -33.53 16 18 C -0.21 -10.44 7.55 84.03 0.63 -9.80 16 19 H 0.08 3.70 7.38 -2.91 -0.02 3.68 16 20 C -0.07 -3.71 5.50 84.86 0.47 -3.25 16 21 N -0.96 -55.33 13.06 21.65 0.28 -55.05 16 22 Si 0.96 43.84 29.55 68.60 2.03 45.86 16 23 H -0.29 -13.13 7.11 99.48 0.71 -12.42 16 24 H -0.31 -14.59 7.11 99.48 0.71 -13.88 16 25 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 26 C -0.11 -3.46 2.69 -10.79 -0.03 -3.49 16 27 C -0.14 -3.58 8.84 71.98 0.64 -2.95 16 28 C -0.13 -4.59 8.25 71.98 0.59 -4.00 16 29 C -0.16 -4.03 9.61 22.37 0.21 -3.82 16 30 H 0.07 0.63 7.66 -2.39 -0.02 0.61 16 31 H 0.12 0.87 8.14 -2.39 -0.02 0.85 16 32 H 0.06 0.64 7.66 -2.39 -0.02 0.62 16 33 H 0.15 2.22 6.30 -2.91 -0.02 2.20 16 34 H 0.14 2.58 8.06 -2.91 -0.02 2.56 16 35 H 0.11 3.23 7.51 -2.91 -0.02 3.21 16 36 H 0.06 1.82 7.56 -2.39 -0.02 1.80 16 37 H 0.08 1.84 8.14 -2.38 -0.02 1.83 16 38 H 0.05 1.46 7.39 -2.39 -0.02 1.44 16 39 H 0.41 13.28 7.56 -92.71 -0.70 12.58 16 40 H 0.08 2.40 6.71 -2.39 -0.02 2.38 16 41 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 42 H 0.37 18.43 7.80 -92.71 -0.72 17.71 16 43 H 0.25 14.02 8.31 -92.71 -0.77 13.25 16 44 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 45 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 46 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 47 H 0.06 1.40 6.54 -2.39 -0.02 1.39 16 48 H 0.05 2.10 5.99 -2.39 -0.01 2.09 16 49 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 50 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 51 H 0.14 3.09 7.94 -2.91 -0.02 3.06 16 Total: -1.00 -64.13 406.82 2.94 -61.19 By element: Atomic # 1 Polarization: 48.03 SS G_CDS: -0.49 Total: 47.54 kcal Atomic # 6 Polarization: -16.28 SS G_CDS: 6.02 Total: -10.26 kcal Atomic # 7 Polarization: -110.32 SS G_CDS: -3.60 Total: -113.91 kcal Atomic # 8 Polarization: -29.39 SS G_CDS: -1.02 Total: -30.41 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 2.03 Total: 45.86 kcal Total: -64.13 2.94 -61.19 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753845782.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.769 kcal (2) G-P(sol) polarization free energy of solvation -64.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.187 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds