Wall clock time and date at job start Tue Mar 31 2020 19:11:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47166 * 2 1 4 4 C 1.50699 * 109.47185 * 120.00471 * 2 1 3 5 5 C 1.38169 * 120.02448 * 300.31614 * 4 2 1 6 6 C 1.38250 * 120.05407 * 180.30062 * 5 4 2 7 7 C 1.38282 * 120.10957 * 359.67761 * 6 5 4 8 8 C 1.38128 * 120.05840 * 0.02562 * 7 6 5 9 9 C 1.38710 * 120.03282 * 119.99945 * 4 2 1 10 10 O 1.35899 * 120.05113 * 359.97438 * 9 4 2 11 11 C 1.42908 * 116.99857 * 179.72932 * 10 9 4 12 12 C 1.50697 * 109.47066 * 180.02562 * 11 10 9 13 13 O 1.21285 * 120.00256 * 359.97438 * 12 11 10 14 14 N 1.34775 * 120.00168 * 179.97438 * 12 11 10 15 15 C 1.46498 * 120.00533 * 179.97438 * 14 12 11 16 16 C 1.52999 * 109.47281 * 179.97438 * 15 14 12 17 17 H 1.09007 * 109.46691 * 55.00839 * 16 15 14 18 18 C 1.52994 * 109.47313 * 295.00596 * 16 15 14 19 19 C 1.53003 * 109.46790 * 175.00106 * 16 15 14 20 20 N 1.46499 * 109.46708 * 185.00148 * 19 16 15 21 21 C 1.36935 * 119.99926 * 180.02562 * 20 19 16 22 22 H 1.08005 * 119.99877 * 359.97438 * 21 20 19 23 23 C 1.38811 * 120.00369 * 179.73019 * 21 20 19 24 24 N 1.31617 * 119.99773 * 359.97438 * 23 21 20 25 25 Si 1.86800 * 120.00451 * 180.02562 * 23 21 20 26 26 H 1.48497 * 109.47050 * 59.99408 * 25 23 21 27 27 H 1.48496 * 109.47289 * 179.97438 * 25 23 21 28 28 H 1.48508 * 109.46855 * 299.99389 * 25 23 21 29 29 H 1.09000 * 109.46889 * 300.00165 * 1 2 3 30 30 H 1.09001 * 109.47273 * 59.99920 * 1 2 3 31 31 H 1.09003 * 109.47390 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.46889 * 239.99835 * 2 1 3 33 33 H 1.09004 * 109.46984 * 179.97438 * 3 2 1 34 34 H 1.09001 * 109.47090 * 300.00191 * 3 2 1 35 35 H 1.09000 * 109.47352 * 60.00118 * 3 2 1 36 36 H 1.07996 * 119.97662 * 359.97438 * 5 4 2 37 37 H 1.07997 * 119.94283 * 179.70399 * 6 5 4 38 38 H 1.08004 * 119.97471 * 180.02562 * 7 6 5 39 39 H 1.08001 * 120.02851 * 180.02562 * 8 7 6 40 40 H 1.09000 * 109.47072 * 59.99902 * 11 10 9 41 41 H 1.08994 * 109.46744 * 299.99980 * 11 10 9 42 42 H 0.97002 * 119.99362 * 0.02562 * 14 12 11 43 43 H 1.09000 * 109.46701 * 60.00421 * 15 14 12 44 44 H 1.08998 * 109.47517 * 300.00740 * 15 14 12 45 45 H 1.08995 * 109.47196 * 59.99903 * 18 16 15 46 46 H 1.09006 * 109.47245 * 179.97438 * 18 16 15 47 47 H 1.09000 * 109.47110 * 299.99807 * 18 16 15 48 48 H 1.08998 * 109.46692 * 65.00650 * 19 16 15 49 49 H 1.08994 * 109.47584 * 305.00514 * 19 16 15 50 50 H 0.97005 * 120.00261 * 0.02562 * 20 19 16 51 51 H 0.97004 * 120.00382 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7105 1.2304 5 6 1.6935 -0.2428 2.4856 6 6 2.1591 -0.8905 3.6148 7 6 2.9593 -2.0115 3.4912 8 6 3.2958 -2.4866 2.2386 9 6 2.8298 -1.8383 1.1038 10 8 3.1587 -2.3043 -0.1297 11 6 3.9881 -3.4668 -0.1841 12 6 4.2460 -3.8330 -1.6230 13 8 3.7663 -3.1646 -2.5142 14 7 5.0096 -4.9032 -1.9197 15 6 5.2598 -5.2595 -3.3184 16 6 6.1490 -6.5033 -3.3767 17 1 5.6895 -7.3056 -2.7994 18 6 7.5235 -6.1755 -2.7903 19 6 6.3081 -6.9486 -4.8318 20 7 7.0591 -8.2056 -4.8783 21 6 7.3265 -8.7992 -6.0830 22 1 6.9834 -8.3409 -6.9988 23 6 8.0429 -9.9873 -6.1275 24 7 8.4656 -10.5431 -5.0118 25 14 8.4083 -10.7968 -7.7709 26 1 9.2017 -9.8675 -8.6148 27 1 9.1819 -12.0444 -7.5471 28 1 7.1321 -11.1216 -8.4573 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 3.1300 1.4424 0.0005 34 1 1.6766 1.9563 -0.8900 35 1 1.6767 1.9563 0.8900 36 1 1.0687 0.6325 2.5848 37 1 1.8970 -0.5206 4.5950 38 1 3.3215 -2.5160 4.3748 39 1 3.9205 -3.3624 2.1426 40 1 3.4870 -4.2945 0.3176 41 1 4.9357 -3.2606 0.3133 42 1 5.3929 -5.4379 -1.2069 43 1 5.7606 -4.4316 -3.8202 44 1 4.3123 -5.4661 -3.8159 45 1 7.4101 -5.8582 -1.7537 46 1 8.1568 -7.0618 -2.8314 47 1 7.9829 -5.3732 -3.3676 48 1 6.8471 -6.1825 -5.3893 49 1 5.3240 -7.0966 -5.2763 50 1 7.3670 -8.6174 -4.0558 51 1 8.9666 -11.3732 -5.0429 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001482166607.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:11:17 Heat of formation + Delta-G solvation = -57.337741 kcal Electronic energy + Delta-G solvation = -27775.880165 eV Core-core repulsion = 23868.199085 eV Total energy + Delta-G solvation = -3907.681080 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.86394 -39.70822 -37.83790 -36.77388 -35.63821 -34.43738 -32.61293 -30.67032 -30.42807 -29.99462 -28.52699 -27.37301 -26.36930 -25.16659 -23.84256 -22.71572 -22.23238 -20.86791 -20.35417 -19.83832 -18.53212 -17.61524 -16.92018 -16.70004 -16.46246 -15.86355 -15.82117 -15.22839 -14.80494 -14.65803 -14.34271 -14.30181 -14.16543 -13.81744 -13.71522 -13.57146 -13.10137 -12.95626 -12.81508 -12.60804 -12.41488 -12.31936 -12.28681 -12.08910 -11.99675 -11.45140 -11.38021 -11.09638 -10.93321 -10.89155 -10.85000 -10.73565 -10.61151 -10.46927 -10.13830 -9.93315 -9.68797 -9.18494 -9.16202 -8.89170 -8.46682 -6.94643 -5.78884 -3.07405 0.97287 1.10177 2.31451 2.40421 3.40847 3.43562 3.43684 3.47960 3.49080 4.28032 4.35394 4.49175 4.57409 4.60336 4.68079 4.68209 4.83920 4.89063 4.97508 4.99420 5.04576 5.16291 5.20264 5.30382 5.32833 5.37333 5.53709 5.55771 5.57849 5.71588 5.75461 5.80197 5.89404 5.90752 5.92494 6.00669 6.03666 6.05384 6.17681 6.18155 6.28633 6.32545 6.37973 6.42974 6.61286 6.73506 6.82745 7.00979 7.32122 7.68444 8.02463 8.40209 9.51495 10.08350 10.43144 11.43983 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.026560 B = 0.001646 C = 0.001579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1053.981812 B =17010.733766 C =17727.899424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.057 4.057 3 C -0.141 4.141 4 C -0.101 4.101 5 C -0.079 4.079 6 C -0.157 4.157 7 C -0.085 4.085 8 C -0.208 4.208 9 C 0.130 3.870 10 O -0.286 6.286 11 C 0.040 3.960 12 C 0.513 3.487 13 O -0.518 6.518 14 N -0.721 5.721 15 C 0.128 3.872 16 C -0.110 4.110 17 H 0.077 0.923 18 C -0.142 4.142 19 C 0.160 3.840 20 N -0.730 5.730 21 C -0.240 4.240 22 H 0.070 0.930 23 C -0.014 4.014 24 N -0.935 5.935 25 Si 0.908 3.092 26 H -0.286 1.286 27 H -0.291 1.291 28 H -0.286 1.286 29 H 0.053 0.947 30 H 0.058 0.942 31 H 0.055 0.945 32 H 0.091 0.909 33 H 0.055 0.945 34 H 0.058 0.942 35 H 0.053 0.947 36 H 0.127 0.873 37 H 0.122 0.878 38 H 0.124 0.876 39 H 0.128 0.872 40 H 0.093 0.907 41 H 0.092 0.908 42 H 0.402 0.598 43 H 0.071 0.929 44 H 0.071 0.929 45 H 0.042 0.958 46 H 0.070 0.930 47 H 0.053 0.947 48 H 0.023 0.977 49 H 0.021 0.979 50 H 0.384 0.616 51 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.021 21.458 20.267 32.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.075 4.075 3 C -0.198 4.198 4 C -0.102 4.102 5 C -0.097 4.097 6 C -0.175 4.175 7 C -0.103 4.103 8 C -0.227 4.227 9 C 0.085 3.915 10 O -0.198 6.198 11 C -0.038 4.038 12 C 0.297 3.703 13 O -0.393 6.393 14 N -0.374 5.374 15 C 0.005 3.995 16 C -0.129 4.129 17 H 0.096 0.904 18 C -0.199 4.199 19 C 0.032 3.968 20 N -0.375 5.375 21 C -0.371 4.371 22 H 0.088 0.912 23 C -0.210 4.210 24 N -0.583 5.583 25 Si 0.739 3.261 26 H -0.213 1.213 27 H -0.217 1.217 28 H -0.213 1.213 29 H 0.072 0.928 30 H 0.077 0.923 31 H 0.074 0.926 32 H 0.109 0.891 33 H 0.074 0.926 34 H 0.077 0.923 35 H 0.072 0.928 36 H 0.145 0.855 37 H 0.140 0.860 38 H 0.142 0.858 39 H 0.146 0.854 40 H 0.110 0.890 41 H 0.110 0.890 42 H 0.236 0.764 43 H 0.089 0.911 44 H 0.089 0.911 45 H 0.061 0.939 46 H 0.089 0.911 47 H 0.072 0.928 48 H 0.041 0.959 49 H 0.039 0.961 50 H 0.218 0.782 51 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -13.413 21.986 19.218 32.134 hybrid contribution 0.745 -1.224 0.012 1.432 sum -12.668 20.762 19.230 31.006 Atomic orbital electron populations 1.21836 0.94403 1.01945 1.01650 1.20027 0.95735 0.95827 0.95946 1.21834 1.01249 0.95084 1.01649 1.19251 1.00028 0.95136 0.95779 1.20843 0.98590 0.99278 0.90987 1.21047 1.00596 0.97257 0.98576 1.20928 0.96818 0.95913 0.96636 1.21258 1.05904 1.02990 0.92563 1.18872 0.95297 0.93743 0.83612 1.86147 1.65272 1.42830 1.25553 1.22493 0.96217 0.88877 0.96254 1.19945 0.79290 0.81126 0.89954 1.90762 1.49207 1.50856 1.48487 1.45898 1.52011 1.29597 1.09926 1.21464 0.99942 0.97547 0.80541 1.21560 0.95756 0.95907 0.99726 0.90450 1.21799 0.96715 1.02605 0.98817 1.20575 0.95293 0.89568 0.91369 1.42322 1.65555 1.22952 1.06686 1.19197 1.28551 1.03322 0.86062 0.91185 1.24735 1.01051 0.98198 0.97000 1.69643 1.42772 1.20712 1.25213 0.86248 0.77883 0.78678 0.83261 1.21261 1.21694 1.21251 0.92771 0.92315 0.92610 0.89084 0.92623 0.92310 0.92779 0.85478 0.85971 0.85802 0.85400 0.88951 0.88978 0.76387 0.91106 0.91104 0.93945 0.91071 0.92751 0.95948 0.96075 0.78211 0.93477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.10 9.00 37.16 0.33 -0.77 16 2 C -0.06 -0.53 3.06 -91.77 -0.28 -0.81 16 3 C -0.14 -1.10 9.01 37.16 0.33 -0.76 16 4 C -0.10 -0.96 4.79 -104.47 -0.50 -1.46 16 5 C -0.08 -0.61 8.71 -39.60 -0.34 -0.96 16 6 C -0.16 -1.11 10.04 -39.56 -0.40 -1.51 16 7 C -0.08 -0.61 10.04 -39.61 -0.40 -1.01 16 8 C -0.21 -1.71 9.04 -39.43 -0.36 -2.07 16 9 C 0.13 1.33 6.66 -39.22 -0.26 1.06 16 10 O -0.29 -3.32 8.44 -39.33 -0.33 -3.65 16 11 C 0.04 0.36 5.22 36.00 0.19 0.55 16 12 C 0.51 6.24 7.91 -10.99 -0.09 6.15 16 13 O -0.52 -8.71 16.50 -14.36 -0.24 -8.94 16 14 N -0.72 -7.67 5.28 -60.30 -0.32 -7.99 16 15 C 0.13 1.68 5.06 -4.04 -0.02 1.66 16 16 C -0.11 -1.62 2.46 -90.62 -0.22 -1.84 16 17 H 0.08 1.14 8.14 -51.92 -0.42 0.71 16 18 C -0.14 -1.99 8.94 37.15 0.33 -1.66 16 19 C 0.16 3.11 5.65 -4.04 -0.02 3.09 16 20 N -0.73 -18.03 5.33 -59.91 -0.32 -18.35 16 21 C -0.24 -6.68 9.99 -15.06 -0.15 -6.83 16 22 H 0.07 1.89 7.83 -52.48 -0.41 1.48 16 23 C -0.01 -0.40 5.50 -17.43 -0.10 -0.49 16 24 N -0.93 -27.88 13.06 55.49 0.72 -27.16 16 25 Si 0.91 22.33 29.55 -169.99 -5.02 17.30 16 26 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 27 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 28 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 29 H 0.05 0.35 7.37 -51.93 -0.38 -0.03 16 30 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.09 1.05 6.99 -51.93 -0.36 0.69 16 33 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.05 0.35 7.41 -51.93 -0.38 -0.03 16 36 H 0.13 0.75 7.10 -52.49 -0.37 0.38 16 37 H 0.12 0.61 8.06 -52.49 -0.42 0.19 16 38 H 0.12 0.63 8.06 -52.48 -0.42 0.20 16 39 H 0.13 0.78 6.30 -52.49 -0.33 0.45 16 40 H 0.09 0.60 7.66 -51.93 -0.40 0.20 16 41 H 0.09 0.59 7.66 -51.93 -0.40 0.19 16 42 H 0.40 3.15 7.66 -40.82 -0.31 2.84 16 43 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 44 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 45 H 0.04 0.46 7.18 -51.93 -0.37 0.09 16 46 H 0.07 1.18 7.18 -51.93 -0.37 0.81 16 47 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 48 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 49 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 50 H 0.38 9.82 6.85 -40.82 -0.28 9.54 16 51 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 413.62 15.07 6.23 6.23 Total: -1.00 -33.87 413.62 -9.81 -43.68 By element: Atomic # 1 Polarization: 15.11 SS G_CDS: -8.59 Total: 6.53 kcal Atomic # 6 Polarization: -5.70 SS G_CDS: -1.95 Total: -7.65 kcal Atomic # 7 Polarization: -53.58 SS G_CDS: 0.09 Total: -53.50 kcal Atomic # 8 Polarization: -12.03 SS G_CDS: -0.57 Total: -12.60 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.02 Total: 17.30 kcal Total LS contribution 6.23 Total: 6.23 kcal Total: -33.87 -9.81 -43.68 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482166607.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.657 kcal (2) G-P(sol) polarization free energy of solvation -33.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.680 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds