Wall clock time and date at job start Tue Mar 31 2020 18:28:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35903 * 116.99940 * 2 1 4 4 C 1.38760 * 120.05430 * 0.24720 * 3 2 1 5 5 C 1.38119 * 119.94197 * 180.32015 * 4 3 2 6 6 C 1.38285 * 120.05766 * 359.67890 * 5 4 3 7 7 C 1.38247 * 120.11146 * 0.02960 * 6 5 4 8 8 C 1.38165 * 120.05308 * 0.02562 * 7 6 5 9 9 C 1.50698 * 120.02373 * 179.97438 * 8 7 6 10 10 H 1.09008 * 109.46977 * 179.97438 * 9 8 7 11 11 C 1.53001 * 109.47043 * 299.99111 * 9 8 7 12 12 C 1.52997 * 109.47721 * 59.99577 * 9 8 7 13 13 C 1.50701 * 109.47212 * 174.99887 * 12 9 8 14 14 O 1.21280 * 119.99781 * 0.02562 * 13 12 9 15 15 N 1.34780 * 119.99795 * 179.97438 * 13 12 9 16 16 C 1.46490 * 120.00111 * 0.02562 * 15 13 12 17 17 C 1.46497 * 119.99566 * 180.02562 * 15 13 12 18 18 C 1.53006 * 109.46992 * 90.00440 * 17 15 13 19 19 C 1.52997 * 109.46977 * 179.97438 * 18 17 15 20 20 N 1.46502 * 109.47219 * 179.97438 * 19 18 17 21 21 C 1.36936 * 120.00280 * 179.97438 * 20 19 18 22 22 H 1.08006 * 120.00216 * 0.02562 * 21 20 19 23 23 C 1.38808 * 119.99948 * 180.02562 * 21 20 19 24 24 N 1.31618 * 120.00303 * 0.02562 * 23 21 20 25 25 Si 1.86802 * 120.00019 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.47190 * 89.99691 * 25 23 21 27 27 H 1.48498 * 109.47085 * 210.00176 * 25 23 21 28 28 H 1.48506 * 109.47016 * 330.00186 * 25 23 21 29 29 H 1.09001 * 109.46994 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47279 * 299.99942 * 1 2 3 31 31 H 1.09002 * 109.46964 * 60.00598 * 1 2 3 32 32 H 1.07997 * 120.02787 * 0.03138 * 4 3 2 33 33 H 1.08003 * 119.97437 * 179.71069 * 5 4 3 34 34 H 1.08007 * 119.94656 * 180.02562 * 6 5 4 35 35 H 1.07994 * 119.96964 * 179.97438 * 7 6 5 36 36 H 1.08996 * 109.47271 * 300.01083 * 11 9 8 37 37 H 1.09008 * 109.46731 * 60.00465 * 11 9 8 38 38 H 1.08998 * 109.47430 * 180.02562 * 11 9 8 39 39 H 1.09002 * 109.47153 * 54.99889 * 12 9 8 40 40 H 1.09001 * 109.46832 * 295.00079 * 12 9 8 41 41 H 1.08995 * 109.47620 * 89.99771 * 16 15 13 42 42 H 1.09006 * 109.47028 * 209.99878 * 16 15 13 43 43 H 1.09002 * 109.47109 * 329.99455 * 16 15 13 44 44 H 1.09000 * 109.47018 * 209.99971 * 17 15 13 45 45 H 1.09000 * 109.47828 * 330.00266 * 17 15 13 46 46 H 1.09000 * 109.46856 * 299.99630 * 18 17 15 47 47 H 1.09002 * 109.47088 * 59.99836 * 18 17 15 48 48 H 1.08998 * 109.47532 * 300.00118 * 19 18 17 49 49 H 1.09000 * 109.47620 * 59.99963 * 19 18 17 50 50 H 0.96997 * 119.99904 * 0.02562 * 20 19 18 51 51 H 0.96996 * 120.00318 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2913 2.3754 0.0052 5 6 1.9207 3.6048 -0.0015 6 6 3.3017 3.6759 -0.0067 7 6 4.0559 2.5172 -0.0058 8 6 3.4310 1.2849 -0.0002 9 6 4.2537 0.0223 0.0002 10 1 3.5910 -0.8431 0.0054 11 6 5.1318 -0.0146 -1.2522 12 6 5.1411 -0.0080 1.2462 13 6 5.8721 -1.3242 1.3105 14 8 5.7006 -2.1560 0.4447 15 7 6.7171 -1.5767 2.3297 16 6 6.9247 -0.5718 3.3751 17 6 7.4281 -2.8560 2.3918 18 6 8.7624 -2.7344 1.6528 19 6 9.5052 -4.0703 1.7183 20 7 10.7825 -3.9541 1.0102 21 6 11.6249 -5.0311 0.9362 22 1 11.3475 -5.9665 1.3994 23 6 12.8353 -4.9208 0.2658 24 7 13.1736 -3.7807 -0.2983 25 14 13.9841 -6.3902 0.1641 26 1 13.6672 -7.1832 -1.0508 27 1 15.3895 -5.9159 0.0931 28 1 13.8087 -7.2400 1.3694 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8901 32 1 0.2128 2.3204 0.0097 33 1 1.3338 4.5114 -0.0022 34 1 3.7921 4.6382 -0.0115 35 1 5.1342 2.5754 -0.0102 36 1 4.4997 0.0070 -2.1399 37 1 5.7945 0.8508 -1.2570 38 1 5.7265 -0.9280 -1.2522 39 1 4.5221 0.1077 2.1360 40 1 5.8634 0.8069 1.1977 41 1 6.2020 -0.7263 4.1763 42 1 7.9348 -0.6656 3.7739 43 1 6.7917 0.4244 2.9531 44 1 7.6124 -3.1191 3.4334 45 1 6.8225 -3.6315 1.9229 46 1 8.5781 -2.4713 0.6112 47 1 9.3681 -1.9589 2.1218 48 1 9.6895 -4.3330 2.7600 49 1 8.8998 -4.8461 1.2496 50 1 11.0319 -3.1139 0.5945 51 1 14.0193 -3.7037 -0.7671 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001498641663.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:28:17 Heat of formation + Delta-G solvation = -67.517632 kcal Electronic energy + Delta-G solvation = -28417.087632 eV Core-core repulsion = 24508.965120 eV Total energy + Delta-G solvation = -3908.122513 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.49773 -40.79138 -38.48020 -37.61628 -36.45073 -35.91852 -34.07845 -31.86139 -31.03769 -30.76598 -28.96557 -28.04912 -27.88673 -26.52672 -24.93867 -24.09689 -22.96817 -22.53837 -21.27379 -19.88254 -19.16977 -19.01979 -18.11297 -17.45017 -17.01437 -16.66752 -16.64243 -16.41311 -16.36084 -15.87946 -15.45279 -15.28974 -15.17328 -15.00641 -14.66828 -14.36455 -14.27651 -13.90489 -13.66891 -13.52576 -13.40197 -13.30135 -13.12327 -12.92139 -12.77251 -12.73703 -12.68645 -12.44340 -12.37666 -12.15857 -12.06163 -11.96725 -11.81582 -11.79937 -11.62323 -11.53018 -10.96309 -10.66671 -9.75737 -9.62500 -9.05989 -9.04236 -7.97471 -5.27664 0.40086 0.53658 1.45525 1.48742 1.57069 1.67332 2.07098 2.43081 2.54934 2.84740 3.35637 3.51081 3.75819 3.86809 3.90618 4.02587 4.11338 4.14996 4.22703 4.26887 4.30954 4.36915 4.38467 4.45255 4.50960 4.53652 4.55446 4.62641 4.64129 4.72141 4.72373 4.75484 4.78668 4.82207 4.90522 4.96113 5.02158 5.13609 5.25649 5.28597 5.29939 5.35526 5.46469 5.48741 5.59106 5.61766 5.66807 5.92351 6.24565 6.45269 6.50369 7.24604 7.29930 8.05021 8.28915 9.26387 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.021097 B = 0.001888 C = 0.001869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1326.899203 B =14828.003019 C =14980.080701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.340 6.340 3 C 0.110 3.890 4 C -0.213 4.213 5 C -0.087 4.087 6 C -0.158 4.158 7 C -0.082 4.082 8 C -0.122 4.122 9 C -0.023 4.023 10 H 0.064 0.936 11 C -0.143 4.143 12 C -0.118 4.118 13 C 0.502 3.498 14 O -0.579 6.579 15 N -0.617 5.617 16 C 0.069 3.931 17 C 0.127 3.873 18 C -0.119 4.119 19 C 0.154 3.846 20 N -0.749 5.749 21 C -0.250 4.250 22 H 0.077 0.923 23 C -0.080 4.080 24 N -0.971 5.971 25 Si 0.979 3.021 26 H -0.288 1.288 27 H -0.292 1.292 28 H -0.266 1.266 29 H 0.109 0.891 30 H 0.068 0.932 31 H 0.064 0.936 32 H 0.144 0.856 33 H 0.148 0.852 34 H 0.145 0.855 35 H 0.141 0.859 36 H 0.047 0.953 37 H 0.065 0.935 38 H 0.049 0.951 39 H 0.111 0.889 40 H 0.116 0.884 41 H 0.076 0.924 42 H 0.079 0.921 43 H 0.091 0.909 44 H 0.104 0.896 45 H 0.064 0.936 46 H 0.037 0.963 47 H 0.068 0.932 48 H 0.034 0.966 49 H 0.012 0.988 50 H 0.372 0.628 51 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.828 19.303 7.248 35.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.254 6.254 3 C 0.065 3.935 4 C -0.231 4.231 5 C -0.105 4.105 6 C -0.176 4.176 7 C -0.100 4.100 8 C -0.122 4.122 9 C -0.042 4.042 10 H 0.082 0.918 11 C -0.201 4.201 12 C -0.158 4.158 13 C 0.292 3.708 14 O -0.459 6.459 15 N -0.349 5.349 16 C -0.073 4.073 17 C 0.003 3.997 18 C -0.158 4.158 19 C 0.027 3.973 20 N -0.391 5.391 21 C -0.381 4.381 22 H 0.095 0.905 23 C -0.272 4.272 24 N -0.622 5.622 25 Si 0.808 3.192 26 H -0.215 1.215 27 H -0.218 1.218 28 H -0.191 1.191 29 H 0.127 0.873 30 H 0.086 0.914 31 H 0.082 0.918 32 H 0.161 0.839 33 H 0.165 0.835 34 H 0.163 0.837 35 H 0.158 0.842 36 H 0.066 0.934 37 H 0.084 0.916 38 H 0.068 0.932 39 H 0.129 0.871 40 H 0.134 0.866 41 H 0.095 0.905 42 H 0.098 0.902 43 H 0.109 0.891 44 H 0.122 0.878 45 H 0.082 0.918 46 H 0.055 0.945 47 H 0.086 0.914 48 H 0.052 0.948 49 H 0.030 0.970 50 H 0.204 0.796 51 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -28.809 18.495 6.881 34.920 hybrid contribution 0.703 -0.613 -0.652 1.138 sum -28.106 17.882 6.229 33.890 Atomic orbital electron populations 1.23287 0.76809 1.05113 1.02239 1.86088 1.23146 1.27389 1.88753 1.19116 0.92137 0.84830 0.97388 1.21470 1.00883 0.92087 1.08679 1.21285 0.95061 0.97482 0.96679 1.21370 0.94164 0.98975 1.03081 1.21082 1.00843 0.90733 0.97340 1.19254 0.90505 0.95587 1.06880 1.19533 0.95335 0.95000 0.94301 0.91755 1.21889 0.99346 1.02076 0.96750 1.21761 0.99378 0.94262 1.00352 1.21320 0.79109 0.89882 0.80452 1.90679 1.65849 1.49852 1.39483 1.48037 1.43249 1.18021 1.25632 1.22113 1.03373 0.91505 0.90268 1.21271 0.91143 0.85660 1.01623 1.21841 0.96530 0.97469 0.99995 1.20706 0.85875 0.95558 0.95113 1.42602 1.18549 1.12549 1.65436 1.19687 0.98146 0.92417 1.27880 0.90487 1.25676 1.00145 1.00193 1.01154 1.69831 1.24068 1.26258 1.42028 0.85055 0.77671 0.78439 0.78074 1.21490 1.21818 1.19111 0.87280 0.91392 0.91787 0.83864 0.83470 0.83715 0.84169 0.93417 0.91627 0.93194 0.87132 0.86558 0.90521 0.90189 0.89070 0.87814 0.91757 0.94457 0.91376 0.94848 0.96986 0.79633 0.93898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 9.81 113.37 1.11 1.34 16 2 O -0.34 -7.00 9.26 -92.46 -0.86 -7.86 16 3 C 0.11 2.14 6.66 22.51 0.15 2.29 16 4 C -0.21 -3.06 9.04 22.37 0.20 -2.86 16 5 C -0.09 -1.04 10.04 22.25 0.22 -0.82 16 6 C -0.16 -1.96 10.04 22.28 0.22 -1.73 16 7 C -0.08 -1.25 8.76 22.25 0.19 -1.05 16 8 C -0.12 -2.37 4.79 -19.77 -0.09 -2.46 16 9 C -0.02 -0.52 2.17 -11.54 -0.03 -0.55 16 10 H 0.06 1.85 6.81 -2.38 -0.02 1.83 16 11 C -0.14 -3.65 8.75 71.98 0.63 -3.02 16 12 C -0.12 -2.26 3.47 29.85 0.10 -2.16 16 13 C 0.50 13.73 7.39 87.66 0.65 14.38 16 14 O -0.58 -21.42 13.54 -3.03 -0.04 -21.46 16 15 N -0.62 -14.61 2.87 -846.77 -2.43 -17.04 16 16 C 0.07 0.96 10.24 127.77 1.31 2.27 16 17 C 0.13 3.53 5.41 86.38 0.47 4.00 16 18 C -0.12 -4.21 5.65 30.60 0.17 -4.04 16 19 C 0.15 6.62 6.26 86.38 0.54 7.16 16 20 N -0.75 -40.90 5.60 -343.45 -1.92 -42.83 16 21 C -0.25 -14.70 9.99 84.03 0.84 -13.86 16 22 H 0.08 4.33 7.83 -2.91 -0.02 4.30 16 23 C -0.08 -4.77 5.50 84.86 0.47 -4.31 16 24 N -0.97 -61.71 13.06 21.65 0.28 -61.43 16 25 Si 0.98 47.61 29.55 68.60 2.03 49.64 16 26 H -0.29 -13.81 7.11 99.48 0.71 -13.10 16 27 H -0.29 -14.09 7.11 99.48 0.71 -13.38 16 28 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 29 H 0.11 0.97 8.14 -2.39 -0.02 0.95 16 30 H 0.07 0.56 7.65 -2.39 -0.02 0.54 16 31 H 0.06 0.58 7.67 -2.39 -0.02 0.56 16 32 H 0.14 1.42 6.30 -2.91 -0.02 1.40 16 33 H 0.15 0.96 8.06 -2.91 -0.02 0.93 16 34 H 0.15 1.11 8.06 -2.91 -0.02 1.09 16 35 H 0.14 1.70 7.16 -2.91 -0.02 1.68 16 36 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 37 H 0.06 1.40 7.39 -2.38 -0.02 1.38 16 38 H 0.05 1.60 5.95 -2.39 -0.01 1.58 16 39 H 0.11 1.69 8.11 -2.39 -0.02 1.67 16 40 H 0.12 1.67 6.83 -2.39 -0.02 1.65 16 41 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 42 H 0.08 1.08 8.07 -2.38 -0.02 1.06 16 43 H 0.09 0.91 6.44 -2.39 -0.02 0.89 16 44 H 0.10 2.31 8.07 -2.39 -0.02 2.29 16 45 H 0.06 2.06 7.42 -2.39 -0.02 2.04 16 46 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 47 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 48 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 49 H 0.01 0.54 8.14 -2.39 -0.02 0.52 16 50 H 0.37 21.58 7.67 -92.71 -0.71 20.87 16 51 H 0.25 15.41 8.31 -92.71 -0.77 14.64 16 Total: -1.00 -79.80 409.99 4.42 -75.37 By element: Atomic # 1 Polarization: 30.82 SS G_CDS: 0.20 Total: 31.02 kcal Atomic # 6 Polarization: -12.57 SS G_CDS: 7.16 Total: -5.41 kcal Atomic # 7 Polarization: -117.23 SS G_CDS: -4.07 Total: -121.30 kcal Atomic # 8 Polarization: -28.42 SS G_CDS: -0.90 Total: -29.32 kcal Atomic # 14 Polarization: 47.61 SS G_CDS: 2.03 Total: 49.64 kcal Total: -79.80 4.42 -75.37 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001498641663.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.857 kcal (2) G-P(sol) polarization free energy of solvation -79.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.374 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds