Wall clock time and date at job start Tue Mar 31 2020 17:53:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47502 * 2 1 4 4 N 1.46506 * 109.47289 * 240.00332 * 2 1 3 5 5 C 1.34780 * 120.00059 * 84.99797 * 4 2 1 6 6 O 1.21287 * 119.99857 * 0.02562 * 5 4 2 7 7 C 1.50696 * 120.00249 * 180.02562 * 5 4 2 8 8 H 1.09000 * 109.46715 * 320.00059 * 7 5 4 9 9 N 1.46901 * 109.47302 * 200.00291 * 7 5 4 10 10 C 1.52998 * 109.47094 * 79.99868 * 7 5 4 11 11 C 1.53000 * 109.47284 * 184.99979 * 10 7 5 12 12 C 1.53001 * 109.47217 * 180.02562 * 11 10 7 13 13 C 1.50701 * 109.46977 * 180.02562 * 12 11 10 14 14 H 1.08002 * 119.99904 * 359.97438 * 13 12 11 15 15 C 1.37878 * 120.00108 * 180.02562 * 13 12 11 16 16 N 1.31518 * 119.99782 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 120.00072 * 179.97438 * 15 13 12 18 18 H 1.48502 * 109.46945 * 90.00145 * 17 15 13 19 19 H 1.48497 * 109.46846 * 209.99732 * 17 15 13 20 20 H 1.48492 * 109.47313 * 329.99805 * 17 15 13 21 21 C 1.52999 * 109.47317 * 120.00646 * 2 1 3 22 22 C 1.53006 * 109.46623 * 299.99820 * 21 2 1 23 23 O 1.42895 * 109.47162 * 59.99389 * 21 2 1 24 24 C 1.50698 * 109.47150 * 180.02562 * 21 2 1 25 25 C 1.38227 * 120.00438 * 29.72434 * 24 21 2 26 26 C 1.38229 * 120.00244 * 179.76318 * 25 24 21 27 27 C 1.38241 * 120.00100 * 0.51318 * 26 25 24 28 28 C 1.38239 * 119.99646 * 359.74026 * 27 26 25 29 29 C 1.38236 * 119.99892 * 0.02562 * 28 27 26 30 30 H 1.09001 * 109.46832 * 59.99522 * 1 2 3 31 31 H 1.08992 * 109.47303 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47153 * 299.99713 * 1 2 3 33 33 H 0.97000 * 120.00117 * 265.00154 * 4 2 1 34 34 H 1.00899 * 111.00100 * 176.04366 * 9 7 5 35 35 H 1.00898 * 110.99845 * 300.00381 * 9 7 5 36 36 H 1.08995 * 109.47461 * 305.00673 * 10 7 5 37 37 H 1.09003 * 109.46692 * 65.00654 * 10 7 5 38 38 H 1.09002 * 109.47272 * 300.00308 * 11 10 7 39 39 H 1.09005 * 109.46654 * 60.00142 * 11 10 7 40 40 H 1.09002 * 109.46941 * 300.00131 * 12 11 10 41 41 H 1.08994 * 109.47083 * 60.00327 * 12 11 10 42 42 H 0.96993 * 120.00018 * 180.02562 * 16 15 13 43 43 H 1.09001 * 109.47002 * 179.97438 * 22 21 2 44 44 H 1.08993 * 109.46955 * 300.00075 * 22 21 2 45 45 H 1.09000 * 109.47050 * 59.99904 * 22 21 2 46 46 H 0.96709 * 113.99981 * 60.00518 * 23 21 2 47 47 H 1.08003 * 119.99904 * 359.97438 * 25 24 21 48 48 H 1.08006 * 120.00456 * 180.22715 * 26 25 24 49 49 H 1.07993 * 120.00487 * 179.72263 * 27 26 25 50 50 H 1.07994 * 120.00222 * 179.97438 * 28 27 26 51 51 H 1.07998 * 119.99829 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0184 -0.6906 -1.1962 5 6 2.1471 -0.0181 -2.3572 6 8 1.8590 1.1588 -2.4115 7 6 2.6489 -0.7286 -3.5878 8 1 3.4549 -1.4083 -3.3116 9 7 3.1503 0.2588 -4.5531 10 6 1.5048 -1.5241 -4.2196 11 6 2.0415 -2.3434 -5.3950 12 6 0.8973 -3.1384 -6.0272 13 6 1.4262 -3.9459 -7.1845 14 1 2.4735 -3.8966 -7.4435 15 6 0.5727 -4.7468 -7.9134 16 7 -0.7027 -4.8064 -7.5983 17 14 1.2281 -5.7471 -9.3484 18 1 1.6655 -7.0808 -8.8633 19 1 0.1576 -5.9163 -10.3636 20 1 2.3820 -5.0396 -9.9590 21 6 2.0400 -0.7214 1.2491 22 6 1.5300 -0.0001 2.4984 23 8 1.5636 -2.0686 1.2491 24 6 3.5470 -0.7208 1.2494 25 6 4.2379 0.3134 0.6463 26 6 5.6202 0.3164 0.6509 27 6 6.3117 -0.7203 1.2493 28 6 5.6207 -1.7573 1.8479 29 6 4.2384 -1.7578 1.8475 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 2.2491 -1.6317 -1.1528 34 1 3.5514 -0.1955 -5.3598 35 1 2.4212 0.9012 -4.8249 36 1 1.0743 -2.1945 -3.4759 37 1 0.7379 -0.8365 -4.5762 38 1 2.4720 -1.6729 -6.1388 39 1 2.8086 -3.0309 -5.0384 40 1 0.4666 -3.8089 -5.2835 41 1 0.1307 -2.4507 -6.3838 42 1 -1.3031 -5.3701 -8.1108 43 1 1.8930 -0.5143 3.3884 44 1 1.8933 1.0275 2.4984 45 1 0.4400 -0.0001 2.4984 46 1 1.8489 -2.5867 0.4839 47 1 3.6978 1.1209 0.1745 48 1 6.1601 1.1263 0.1828 49 1 7.3917 -0.7203 1.2490 50 1 6.1609 -2.5674 2.3151 51 1 3.6986 -2.5681 2.3148 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001576180708.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:53:38 Heat of formation + Delta-G solvation = -82.644679 kcal Electronic energy + Delta-G solvation = -29497.558789 eV Core-core repulsion = 25588.780319 eV Total energy + Delta-G solvation = -3908.778471 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.89315 -39.45669 -37.85758 -36.04512 -34.70699 -33.37810 -32.74683 -31.26492 -31.11589 -30.88876 -28.84613 -27.77459 -25.75085 -24.61930 -23.09344 -22.66054 -21.92481 -20.34584 -20.28497 -20.12616 -18.00367 -17.70403 -16.89656 -16.34255 -16.21549 -15.44531 -15.14070 -14.94328 -14.76490 -14.54400 -14.53001 -14.50059 -14.08934 -13.73564 -13.66376 -13.45225 -13.01851 -12.80315 -12.73506 -12.51203 -12.47377 -12.26141 -12.05332 -11.94507 -11.83840 -11.56121 -11.46305 -11.23842 -10.96652 -10.84684 -10.73800 -10.59059 -10.33569 -9.84909 -9.77421 -9.40720 -9.22466 -9.16003 -9.12613 -9.03686 -8.50060 -8.39450 -6.04795 -4.07884 1.03795 1.15873 2.70593 2.97013 3.28390 3.35046 3.38060 3.49960 3.77244 4.14850 4.29333 4.41453 4.70735 4.73041 4.76631 4.82010 4.84837 4.92372 5.05367 5.18502 5.21365 5.23440 5.29871 5.31107 5.31373 5.40047 5.46457 5.57061 5.68292 5.71197 5.73861 5.79530 5.86212 5.94958 6.12014 6.21315 6.23063 6.27214 6.28094 6.34073 6.54540 6.70862 6.72824 6.99575 7.12756 7.20866 7.42814 7.58325 7.60495 7.73121 7.94178 8.24038 8.36047 8.99257 9.56764 11.06407 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.013804 B = 0.002492 C = 0.002427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2027.977980 B =11235.429049 C =11532.858143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.120 3.880 3 H 0.096 0.904 4 N -0.726 5.726 5 C 0.530 3.470 6 O -0.533 6.533 7 C 0.076 3.924 8 H 0.097 0.903 9 N -0.830 5.830 10 C -0.146 4.146 11 C -0.108 4.108 12 C 0.023 3.977 13 C -0.523 4.523 14 H 0.055 0.945 15 C 0.057 3.943 16 N -0.895 5.895 17 Si 0.892 3.108 18 H -0.280 1.280 19 H -0.286 1.286 20 H -0.274 1.274 21 C 0.169 3.831 22 C -0.135 4.135 23 O -0.545 6.545 24 C -0.120 4.120 25 C -0.100 4.100 26 C -0.119 4.119 27 C -0.117 4.117 28 C -0.123 4.123 29 C -0.103 4.103 30 H 0.062 0.938 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.395 0.605 34 H 0.351 0.649 35 H 0.349 0.651 36 H 0.065 0.935 37 H 0.063 0.937 38 H 0.048 0.952 39 H 0.050 0.950 40 H 0.015 0.985 41 H 0.014 0.986 42 H 0.261 0.739 43 H 0.068 0.932 44 H 0.073 0.927 45 H 0.074 0.926 46 H 0.375 0.625 47 H 0.123 0.877 48 H 0.122 0.878 49 H 0.120 0.880 50 H 0.121 0.879 51 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.488 9.245 22.450 26.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.015 3.985 3 H 0.114 0.886 4 N -0.380 5.380 5 C 0.317 3.683 6 O -0.408 6.408 7 C -0.040 4.040 8 H 0.115 0.885 9 N -0.362 5.362 10 C -0.186 4.186 11 C -0.146 4.146 12 C -0.014 4.014 13 C -0.561 4.561 14 H 0.073 0.927 15 C -0.145 4.145 16 N -0.534 5.534 17 Si 0.720 3.280 18 H -0.206 1.206 19 H -0.212 1.212 20 H -0.199 1.199 21 C 0.128 3.872 22 C -0.193 4.193 23 O -0.351 6.351 24 C -0.120 4.120 25 C -0.118 4.118 26 C -0.137 4.137 27 C -0.135 4.135 28 C -0.141 4.141 29 C -0.121 4.121 30 H 0.081 0.919 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.230 0.770 34 H 0.166 0.834 35 H 0.162 0.838 36 H 0.084 0.916 37 H 0.082 0.918 38 H 0.066 0.934 39 H 0.069 0.931 40 H 0.034 0.966 41 H 0.033 0.967 42 H 0.070 0.930 43 H 0.087 0.913 44 H 0.092 0.908 45 H 0.093 0.907 46 H 0.223 0.777 47 H 0.141 0.859 48 H 0.140 0.860 49 H 0.138 0.862 50 H 0.139 0.861 51 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 9.337 10.465 23.490 27.359 hybrid contribution -0.007 -1.742 -2.037 2.680 sum 9.331 8.723 21.453 24.968 Atomic orbital electron populations 1.22161 0.94238 1.03102 1.02529 1.21580 0.95148 0.97923 0.83842 0.88582 1.45954 1.68573 1.13829 1.09626 1.20678 0.76468 0.87082 0.84107 1.90655 1.49376 1.15983 1.84818 1.21430 0.97961 0.93309 0.91271 0.88483 1.58687 1.38616 1.19756 1.19113 1.22400 0.97225 0.99270 0.99684 1.21651 1.00429 0.97718 0.94820 1.19072 0.92667 0.94458 0.95251 1.21244 0.94914 1.25805 1.14133 0.92700 1.25033 0.94862 0.96940 0.97619 1.69962 1.03312 1.39605 1.40535 0.86598 0.78606 0.80532 0.82304 1.20638 1.21200 1.19857 1.20274 0.88388 0.83295 0.95276 1.21790 1.02363 0.99711 0.95398 1.86595 1.76509 1.22581 1.49388 1.20406 0.95556 0.96148 0.99893 1.21117 0.94366 0.98270 0.98053 1.21172 0.94276 0.98792 0.99462 1.21211 0.99947 0.94384 0.97937 1.21156 0.94289 0.98671 1.00001 1.21003 0.94067 0.98271 0.98785 0.91854 0.91494 0.91467 0.77039 0.83374 0.83763 0.91628 0.91783 0.93356 0.93089 0.96646 0.96727 0.92958 0.91282 0.90813 0.90721 0.77663 0.85910 0.86021 0.86169 0.86072 0.85445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.62 8.99 37.16 0.33 -1.28 16 2 C 0.12 1.16 1.34 -67.93 -0.09 1.06 16 3 H 0.10 1.05 5.94 -51.93 -0.31 0.74 16 4 N -0.73 -7.49 4.33 -53.80 -0.23 -7.72 16 5 C 0.53 7.17 7.04 -10.99 -0.08 7.10 16 6 O -0.53 -8.87 15.91 5.55 0.09 -8.78 16 7 C 0.08 1.02 3.21 -68.87 -0.22 0.80 16 8 H 0.10 1.20 8.14 -51.93 -0.42 0.78 16 9 N -0.83 -11.46 8.94 -5.66 -0.05 -11.51 16 10 C -0.15 -2.28 4.84 -26.73 -0.13 -2.41 16 11 C -0.11 -2.05 4.92 -26.73 -0.13 -2.18 16 12 C 0.02 0.56 4.97 -27.88 -0.14 0.42 16 13 C -0.52 -14.50 9.11 -34.44 -0.31 -14.81 16 14 H 0.05 1.47 7.74 -52.49 -0.41 1.07 16 15 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 16 N -0.89 -26.69 13.29 55.43 0.74 -25.95 16 17 Si 0.89 21.41 29.54 -169.99 -5.02 16.38 16 18 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 19 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 20 H -0.27 -6.43 7.11 56.52 0.40 -6.02 16 21 C 0.17 1.40 0.69 -91.77 -0.06 1.33 16 22 C -0.14 -1.00 8.47 37.16 0.31 -0.69 16 23 O -0.54 -4.59 11.29 -35.23 -0.40 -4.99 16 24 C -0.12 -1.05 4.47 -104.63 -0.47 -1.52 16 25 C -0.10 -0.96 8.86 -39.59 -0.35 -1.31 16 26 C -0.12 -1.08 10.05 -39.58 -0.40 -1.48 16 27 C -0.12 -0.97 10.05 -39.58 -0.40 -1.37 16 28 C -0.12 -1.00 10.05 -39.58 -0.40 -1.40 16 29 C -0.10 -0.87 9.35 -39.58 -0.37 -1.24 16 30 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.07 0.68 7.68 -51.93 -0.40 0.28 16 32 H 0.07 0.56 6.43 -51.93 -0.33 0.23 16 33 H 0.40 3.39 7.15 -40.82 -0.29 3.10 16 34 H 0.35 4.60 7.55 -39.29 -0.30 4.30 16 35 H 0.35 5.01 8.58 -39.29 -0.34 4.67 16 36 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 37 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 38 H 0.05 0.89 6.87 -51.93 -0.36 0.53 16 39 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 40 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 41 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 42 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 43 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 44 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 45 H 0.07 0.53 6.43 -51.93 -0.33 0.20 16 46 H 0.38 2.46 7.51 45.56 0.34 2.80 16 47 H 0.12 1.26 6.16 -52.48 -0.32 0.94 16 48 H 0.12 0.97 8.06 -52.48 -0.42 0.55 16 49 H 0.12 0.78 8.06 -52.49 -0.42 0.36 16 50 H 0.12 0.76 8.06 -52.49 -0.42 0.34 16 51 H 0.13 0.98 7.48 -52.49 -0.39 0.59 16 LS Contribution 407.76 15.07 6.14 6.14 Total: -1.00 -32.54 407.76 -9.38 -41.92 By element: Atomic # 1 Polarization: 19.62 SS G_CDS: -7.65 Total: 11.97 kcal Atomic # 6 Polarization: -14.46 SS G_CDS: -3.00 Total: -17.46 kcal Atomic # 7 Polarization: -45.63 SS G_CDS: 0.45 Total: -45.18 kcal Atomic # 8 Polarization: -13.47 SS G_CDS: -0.31 Total: -13.78 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -32.54 -9.38 -41.92 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001576180708.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.730 kcal (2) G-P(sol) polarization free energy of solvation -32.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.915 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds