Wall clock time and date at job start Tue Mar 31 2020 17:53:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47502 * 2 1 4 4 N 1.46506 * 109.47289 * 240.00332 * 2 1 3 5 5 C 1.34780 * 120.00059 * 84.99797 * 4 2 1 6 6 O 1.21287 * 119.99857 * 0.02562 * 5 4 2 7 7 C 1.50696 * 120.00249 * 180.02562 * 5 4 2 8 8 H 1.09000 * 109.46715 * 320.00059 * 7 5 4 9 9 N 1.46901 * 109.47302 * 200.00291 * 7 5 4 10 10 C 1.52998 * 109.47094 * 79.99868 * 7 5 4 11 11 C 1.53000 * 109.47284 * 184.99979 * 10 7 5 12 12 C 1.53001 * 109.47217 * 180.02562 * 11 10 7 13 13 C 1.50701 * 109.46977 * 180.02562 * 12 11 10 14 14 H 1.08002 * 119.99904 * 359.97438 * 13 12 11 15 15 C 1.37878 * 120.00108 * 180.02562 * 13 12 11 16 16 N 1.31518 * 119.99782 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 120.00072 * 179.97438 * 15 13 12 18 18 H 1.48502 * 109.46945 * 90.00145 * 17 15 13 19 19 H 1.48497 * 109.46846 * 209.99732 * 17 15 13 20 20 H 1.48492 * 109.47313 * 329.99805 * 17 15 13 21 21 C 1.52999 * 109.47317 * 120.00646 * 2 1 3 22 22 C 1.53006 * 109.46623 * 299.99820 * 21 2 1 23 23 O 1.42895 * 109.47162 * 59.99389 * 21 2 1 24 24 C 1.50698 * 109.47150 * 180.02562 * 21 2 1 25 25 C 1.38227 * 120.00438 * 29.72434 * 24 21 2 26 26 C 1.38229 * 120.00244 * 179.76318 * 25 24 21 27 27 C 1.38241 * 120.00100 * 0.51318 * 26 25 24 28 28 C 1.38239 * 119.99646 * 359.74026 * 27 26 25 29 29 C 1.38236 * 119.99892 * 0.02562 * 28 27 26 30 30 H 1.09001 * 109.46832 * 59.99522 * 1 2 3 31 31 H 1.08992 * 109.47303 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47153 * 299.99713 * 1 2 3 33 33 H 0.97000 * 120.00117 * 265.00154 * 4 2 1 34 34 H 1.00899 * 111.00100 * 176.04366 * 9 7 5 35 35 H 1.00898 * 110.99845 * 300.00381 * 9 7 5 36 36 H 1.08995 * 109.47461 * 305.00673 * 10 7 5 37 37 H 1.09003 * 109.46692 * 65.00654 * 10 7 5 38 38 H 1.09002 * 109.47272 * 300.00308 * 11 10 7 39 39 H 1.09005 * 109.46654 * 60.00142 * 11 10 7 40 40 H 1.09002 * 109.46941 * 300.00131 * 12 11 10 41 41 H 1.08994 * 109.47083 * 60.00327 * 12 11 10 42 42 H 0.96993 * 120.00018 * 180.02562 * 16 15 13 43 43 H 1.09001 * 109.47002 * 179.97438 * 22 21 2 44 44 H 1.08993 * 109.46955 * 300.00075 * 22 21 2 45 45 H 1.09000 * 109.47050 * 59.99904 * 22 21 2 46 46 H 0.96709 * 113.99981 * 60.00518 * 23 21 2 47 47 H 1.08003 * 119.99904 * 359.97438 * 25 24 21 48 48 H 1.08006 * 120.00456 * 180.22715 * 26 25 24 49 49 H 1.07993 * 120.00487 * 179.72263 * 27 26 25 50 50 H 1.07994 * 120.00222 * 179.97438 * 28 27 26 51 51 H 1.07998 * 119.99829 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0184 -0.6906 -1.1962 5 6 2.1471 -0.0181 -2.3572 6 8 1.8590 1.1588 -2.4115 7 6 2.6489 -0.7286 -3.5878 8 1 3.4549 -1.4083 -3.3116 9 7 3.1503 0.2588 -4.5531 10 6 1.5048 -1.5241 -4.2196 11 6 2.0415 -2.3434 -5.3950 12 6 0.8973 -3.1384 -6.0272 13 6 1.4262 -3.9459 -7.1845 14 1 2.4735 -3.8966 -7.4435 15 6 0.5727 -4.7468 -7.9134 16 7 -0.7027 -4.8064 -7.5983 17 14 1.2281 -5.7471 -9.3484 18 1 1.6655 -7.0808 -8.8633 19 1 0.1576 -5.9163 -10.3636 20 1 2.3820 -5.0396 -9.9590 21 6 2.0400 -0.7214 1.2491 22 6 1.5300 -0.0001 2.4984 23 8 1.5636 -2.0686 1.2491 24 6 3.5470 -0.7208 1.2494 25 6 4.2379 0.3134 0.6463 26 6 5.6202 0.3164 0.6509 27 6 6.3117 -0.7203 1.2493 28 6 5.6207 -1.7573 1.8479 29 6 4.2384 -1.7578 1.8475 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 2.2491 -1.6317 -1.1528 34 1 3.5514 -0.1955 -5.3598 35 1 2.4212 0.9012 -4.8249 36 1 1.0743 -2.1945 -3.4759 37 1 0.7379 -0.8365 -4.5762 38 1 2.4720 -1.6729 -6.1388 39 1 2.8086 -3.0309 -5.0384 40 1 0.4666 -3.8089 -5.2835 41 1 0.1307 -2.4507 -6.3838 42 1 -1.3031 -5.3701 -8.1108 43 1 1.8930 -0.5143 3.3884 44 1 1.8933 1.0275 2.4984 45 1 0.4400 -0.0001 2.4984 46 1 1.8489 -2.5867 0.4839 47 1 3.6978 1.1209 0.1745 48 1 6.1601 1.1263 0.1828 49 1 7.3917 -0.7203 1.2490 50 1 6.1609 -2.5674 2.3151 51 1 3.6986 -2.5681 2.3148 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001576180708.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:53:37 Heat of formation + Delta-G solvation = -105.187586 kcal Electronic energy + Delta-G solvation = -29498.536323 eV Core-core repulsion = 25588.780319 eV Total energy + Delta-G solvation = -3909.756005 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.71683 -40.39114 -38.59185 -37.37981 -35.60773 -35.26148 -33.50983 -32.98879 -31.78388 -31.62148 -29.70075 -29.18620 -27.10697 -25.64879 -24.22107 -23.68899 -22.75044 -21.87938 -21.26432 -20.98930 -18.84418 -18.55895 -18.46136 -17.77442 -16.97235 -16.53751 -16.36335 -16.17248 -15.99971 -15.72674 -15.45231 -15.22251 -15.09720 -14.80795 -14.60500 -14.30846 -14.25599 -13.97022 -13.65381 -13.58857 -13.46171 -13.35747 -13.22561 -12.97061 -12.90939 -12.65618 -12.56912 -12.42369 -12.35837 -12.28968 -12.11819 -11.65450 -11.51153 -11.43448 -11.26530 -11.05110 -10.75055 -10.56361 -10.13978 -9.81322 -9.69759 -9.66537 -8.20830 -6.32088 0.39049 0.50042 1.40069 1.40989 1.51969 1.60838 2.03560 2.40389 2.84637 3.12716 3.14071 3.44314 3.58369 3.67768 3.72377 3.97583 4.03304 4.07746 4.13450 4.21277 4.27034 4.32061 4.39569 4.42938 4.55260 4.59796 4.67714 4.68961 4.75855 4.84539 4.89674 4.90884 5.00733 5.07969 5.15582 5.16861 5.18891 5.23017 5.31560 5.45453 5.51433 5.58304 5.62201 5.63855 5.72538 5.84702 6.04016 6.09574 6.23353 6.45284 6.48501 6.63055 6.85967 7.21637 7.37794 8.90814 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.013804 B = 0.002492 C = 0.002427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2027.977980 B =11235.429049 C =11532.858143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.123 3.877 3 H 0.085 0.915 4 N -0.711 5.711 5 C 0.530 3.470 6 O -0.567 6.567 7 C 0.085 3.915 8 H 0.117 0.883 9 N -0.831 5.831 10 C -0.133 4.133 11 C -0.094 4.094 12 C 0.024 3.976 13 C -0.542 4.542 14 H 0.063 0.937 15 C -0.002 4.002 16 N -0.935 5.935 17 Si 0.963 3.037 18 H -0.271 1.271 19 H -0.285 1.285 20 H -0.262 1.262 21 C 0.179 3.821 22 C -0.137 4.137 23 O -0.550 6.550 24 C -0.121 4.121 25 C -0.113 4.113 26 C -0.131 4.131 27 C -0.122 4.122 28 C -0.126 4.126 29 C -0.108 4.108 30 H 0.039 0.961 31 H 0.066 0.934 32 H 0.084 0.916 33 H 0.406 0.594 34 H 0.356 0.644 35 H 0.345 0.655 36 H 0.071 0.929 37 H 0.047 0.953 38 H 0.054 0.946 39 H 0.063 0.937 40 H -0.008 1.008 41 H -0.016 1.016 42 H 0.263 0.737 43 H 0.071 0.929 44 H 0.078 0.922 45 H 0.078 0.922 46 H 0.383 0.617 47 H 0.110 0.890 48 H 0.127 0.873 49 H 0.138 0.862 50 H 0.141 0.859 51 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.307 8.284 23.211 27.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.018 3.982 3 H 0.102 0.898 4 N -0.364 5.364 5 C 0.316 3.684 6 O -0.445 6.445 7 C -0.031 4.031 8 H 0.135 0.865 9 N -0.363 5.363 10 C -0.173 4.173 11 C -0.132 4.132 12 C -0.013 4.013 13 C -0.580 4.580 14 H 0.081 0.919 15 C -0.200 4.200 16 N -0.575 5.575 17 Si 0.788 3.212 18 H -0.197 1.197 19 H -0.211 1.211 20 H -0.186 1.186 21 C 0.138 3.862 22 C -0.194 4.194 23 O -0.357 6.357 24 C -0.121 4.121 25 C -0.131 4.131 26 C -0.149 4.149 27 C -0.140 4.140 28 C -0.144 4.144 29 C -0.125 4.125 30 H 0.058 0.942 31 H 0.085 0.915 32 H 0.102 0.898 33 H 0.242 0.758 34 H 0.171 0.829 35 H 0.158 0.842 36 H 0.090 0.910 37 H 0.065 0.935 38 H 0.073 0.927 39 H 0.082 0.918 40 H 0.010 0.990 41 H 0.002 0.998 42 H 0.071 0.929 43 H 0.090 0.910 44 H 0.097 0.903 45 H 0.097 0.903 46 H 0.232 0.768 47 H 0.128 0.872 48 H 0.145 0.855 49 H 0.156 0.844 50 H 0.159 0.841 51 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 11.179 9.480 24.272 28.354 hybrid contribution -0.583 -1.444 -2.228 2.718 sum 10.596 8.037 22.044 25.745 Atomic orbital electron populations 1.22124 0.94361 1.02942 1.02212 1.21606 0.94911 0.97582 0.84093 0.89752 1.45831 1.67297 1.14229 1.09065 1.20665 0.76198 0.86679 0.84818 1.90645 1.50995 1.17459 1.85418 1.21364 0.97426 0.93170 0.91099 0.86535 1.58702 1.38417 1.19747 1.19420 1.22218 0.97582 0.98816 0.98714 1.21427 0.98318 0.97640 0.95789 1.18992 0.93911 0.93895 0.94466 1.21730 0.95404 1.25980 1.14871 0.91895 1.25990 0.95055 0.98261 1.00648 1.70099 1.04746 1.40645 1.42016 0.85474 0.78153 0.79030 0.78575 1.19656 1.21061 1.18636 1.20161 0.88229 0.83175 0.94676 1.21833 1.02636 1.00005 0.94973 1.86592 1.76606 1.22538 1.49952 1.20405 0.95602 0.96130 0.99980 1.21092 0.94737 0.98428 0.98863 1.21349 0.94259 0.99459 0.99868 1.21463 1.00985 0.94047 0.97477 1.21443 0.94323 0.99058 0.99554 1.21149 0.94434 0.98265 0.98698 0.94220 0.91482 0.89772 0.75763 0.82880 0.84191 0.91010 0.93465 0.92720 0.91833 0.98950 0.99788 0.92852 0.90961 0.90266 0.90335 0.76751 0.87151 0.85513 0.84410 0.84150 0.84641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.10 8.99 71.98 0.65 -2.45 16 2 C 0.12 2.30 1.34 44.99 0.06 2.36 16 3 H 0.08 1.85 5.94 -2.39 -0.01 1.84 16 4 N -0.71 -14.10 4.33 -442.52 -1.92 -16.02 16 5 C 0.53 14.09 7.04 87.66 0.62 14.71 16 6 O -0.57 -19.04 15.91 -3.05 -0.05 -19.09 16 7 C 0.08 2.18 3.21 44.17 0.14 2.32 16 8 H 0.12 2.59 8.14 -2.39 -0.02 2.57 16 9 N -0.83 -22.23 8.94 -171.81 -1.54 -23.76 16 10 C -0.13 -4.10 4.84 30.59 0.15 -3.95 16 11 C -0.09 -3.48 4.92 30.59 0.15 -3.33 16 12 C 0.02 1.24 4.97 29.85 0.15 1.39 16 13 C -0.54 -30.06 9.11 25.60 0.23 -29.83 16 14 H 0.06 3.31 7.74 -2.91 -0.02 3.29 16 15 C 0.00 -0.11 5.46 84.65 0.46 0.35 16 16 N -0.93 -56.61 13.29 21.45 0.28 -56.33 16 17 Si 0.96 43.61 29.54 68.60 2.03 45.64 16 18 H -0.27 -11.81 7.11 99.48 0.71 -11.11 16 19 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 20 H -0.26 -11.29 7.11 99.48 0.71 -10.58 16 21 C 0.18 2.73 0.69 -11.54 -0.01 2.73 16 22 C -0.14 -1.85 8.47 71.98 0.61 -1.24 16 23 O -0.55 -8.30 11.29 -148.98 -1.68 -9.99 16 24 C -0.12 -1.96 4.47 -19.87 -0.09 -2.05 16 25 C -0.11 -2.09 8.86 22.27 0.20 -1.89 16 26 C -0.13 -2.26 10.05 22.27 0.22 -2.04 16 27 C -0.12 -1.80 10.05 22.27 0.22 -1.57 16 28 C -0.13 -1.76 10.05 22.27 0.22 -1.53 16 29 C -0.11 -1.60 9.35 22.27 0.21 -1.39 16 30 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 31 H 0.07 1.30 7.68 -2.39 -0.02 1.29 16 32 H 0.08 1.34 6.43 -2.39 -0.02 1.32 16 33 H 0.41 6.33 7.15 -92.71 -0.66 5.67 16 34 H 0.36 8.84 7.55 -89.69 -0.68 8.17 16 35 H 0.34 9.85 8.58 -89.70 -0.77 9.09 16 36 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 37 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 38 H 0.05 1.95 6.87 -2.39 -0.02 1.93 16 39 H 0.06 2.21 8.14 -2.38 -0.02 2.19 16 40 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 16 41 H -0.02 -0.92 8.14 -2.39 -0.02 -0.94 16 42 H 0.26 14.98 8.31 -92.71 -0.77 14.21 16 43 H 0.07 0.94 8.14 -2.39 -0.02 0.93 16 44 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 45 H 0.08 0.99 6.43 -2.39 -0.02 0.98 16 46 H 0.38 4.28 7.51 -74.05 -0.56 3.73 16 47 H 0.11 2.29 6.16 -2.91 -0.02 2.27 16 48 H 0.13 1.94 8.06 -2.91 -0.02 1.92 16 49 H 0.14 1.47 8.06 -2.91 -0.02 1.45 16 50 H 0.14 1.37 8.06 -2.91 -0.02 1.34 16 51 H 0.14 1.78 7.48 -2.91 -0.02 1.76 16 Total: -1.00 -70.20 407.76 -0.38 -70.58 By element: Atomic # 1 Polarization: 38.08 SS G_CDS: -1.70 Total: 36.38 kcal Atomic # 6 Polarization: -31.61 SS G_CDS: 4.20 Total: -27.41 kcal Atomic # 7 Polarization: -92.94 SS G_CDS: -3.17 Total: -96.11 kcal Atomic # 8 Polarization: -27.35 SS G_CDS: -1.73 Total: -29.08 kcal Atomic # 14 Polarization: 43.61 SS G_CDS: 2.03 Total: 45.64 kcal Total: -70.20 -0.38 -70.58 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001576180708.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.608 kcal (2) G-P(sol) polarization free energy of solvation -70.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.579 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds