Wall clock time and date at job start Tue Mar 31 2020 19:10:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35897 * 116.99939 * 2 1 4 4 C 1.38754 * 120.05915 * 0.25458 * 3 2 1 5 5 C 1.38119 * 119.94426 * 180.31944 * 4 3 2 6 6 C 1.38287 * 120.05944 * 359.67534 * 5 4 3 7 7 C 1.38244 * 120.10867 * 0.02692 * 6 5 4 8 8 C 1.38168 * 120.05777 * 0.02562 * 7 6 5 9 9 C 1.50700 * 120.03166 * 179.97438 * 8 7 6 10 10 C 1.52995 * 109.47046 * 239.91088 * 9 8 7 11 11 C 1.53008 * 109.46672 * 359.90622 * 9 8 7 12 12 C 1.50701 * 109.47259 * 119.90566 * 9 8 7 13 13 O 1.21280 * 119.99555 * 354.05618 * 12 9 8 14 14 N 1.34769 * 119.99771 * 174.06071 * 12 9 8 15 15 C 1.46505 * 119.99847 * 180.02562 * 14 12 9 16 16 C 1.52997 * 109.47282 * 179.97438 * 15 14 12 17 17 H 1.09007 * 109.47048 * 54.99414 * 16 15 14 18 18 C 1.52998 * 109.47175 * 294.99586 * 16 15 14 19 19 C 1.53000 * 109.47451 * 174.99587 * 16 15 14 20 20 N 1.46498 * 109.47597 * 184.99912 * 19 16 15 21 21 C 1.36933 * 120.00037 * 179.97438 * 20 19 16 22 22 H 1.07994 * 120.00326 * 359.97438 * 21 20 19 23 23 C 1.38820 * 119.99739 * 179.97438 * 21 20 19 24 24 N 1.31619 * 119.99793 * 0.02562 * 23 21 20 25 25 Si 1.86799 * 119.99962 * 180.02562 * 23 21 20 26 26 H 1.48497 * 109.46998 * 90.00269 * 25 23 21 27 27 H 1.48496 * 109.46942 * 210.00206 * 25 23 21 28 28 H 1.48498 * 109.47149 * 330.00085 * 25 23 21 29 29 H 1.08997 * 109.47214 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47271 * 299.99831 * 1 2 3 31 31 H 1.08999 * 109.46890 * 59.99752 * 1 2 3 32 32 H 1.08001 * 120.02556 * 0.02562 * 4 3 2 33 33 H 1.08000 * 119.96979 * 179.70276 * 5 4 3 34 34 H 1.07994 * 119.94731 * 180.02562 * 6 5 4 35 35 H 1.07996 * 119.97292 * 179.97438 * 7 6 5 36 36 H 1.09001 * 109.46793 * 299.99488 * 10 9 8 37 37 H 1.09005 * 109.46916 * 180.02562 * 10 9 8 38 38 H 1.08996 * 109.47749 * 59.99895 * 10 9 8 39 39 H 1.09001 * 109.47266 * 300.00099 * 11 9 8 40 40 H 1.08997 * 109.46822 * 60.00421 * 11 9 8 41 41 H 1.09005 * 109.46653 * 179.97438 * 11 9 8 42 42 H 0.97003 * 120.00515 * 359.97438 * 14 12 9 43 43 H 1.09006 * 109.46388 * 299.99189 * 15 14 12 44 44 H 1.08994 * 109.47457 * 59.99372 * 15 14 12 45 45 H 1.08995 * 109.47324 * 300.00079 * 18 16 15 46 46 H 1.09002 * 109.46738 * 59.99894 * 18 16 15 47 47 H 1.08995 * 109.47465 * 180.02562 * 18 16 15 48 48 H 1.09003 * 109.46776 * 305.00032 * 19 16 15 49 49 H 1.08998 * 109.47122 * 64.99525 * 19 16 15 50 50 H 0.97003 * 119.99373 * 0.02562 * 20 19 16 51 51 H 0.97004 * 119.99586 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2914 2.3753 0.0053 5 6 1.9209 3.6047 -0.0013 6 6 3.3019 3.6758 -0.0066 7 6 4.0560 2.5171 -0.0057 8 6 3.4311 1.2848 -0.0001 9 6 4.2537 0.0221 0.0003 10 6 3.9216 -0.8033 -1.2444 11 6 5.7408 0.3822 -0.0084 12 6 3.9389 -0.7822 1.2352 13 8 3.2094 -0.3228 2.0883 14 7 4.4680 -2.0118 1.3916 15 6 4.1615 -2.7939 2.5919 16 6 4.8824 -4.1414 2.5204 17 1 5.9493 -3.9752 2.3706 18 6 4.3244 -4.9571 1.3525 19 6 4.6641 -4.9067 3.8272 20 7 5.4506 -6.1425 3.8068 21 6 5.4139 -6.9951 4.8777 22 1 4.8056 -6.7564 5.7375 23 6 6.1587 -8.1664 4.8581 24 7 6.9005 -8.4571 3.8104 25 14 6.1082 -9.3299 6.3186 26 1 5.0142 -10.3158 6.1283 27 1 7.4053 -10.0447 6.4271 28 1 5.8650 -8.5542 7.5613 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 0.2128 2.3204 0.0099 33 1 1.3340 4.5113 -0.0021 34 1 3.7922 4.6380 -0.0114 35 1 5.1344 2.5752 -0.0102 36 1 2.8622 -1.0598 -1.2381 37 1 4.5162 -1.7168 -1.2438 38 1 4.1493 -0.2216 -2.1376 39 1 5.9685 0.9640 -0.9017 40 1 5.9774 0.9702 0.8783 41 1 6.3358 -0.5311 -0.0077 42 1 5.0512 -2.3793 0.7091 43 1 4.4951 -2.2493 3.4753 44 1 3.0860 -2.9604 2.6523 45 1 3.2576 -5.1233 1.5023 46 1 4.4800 -4.4120 0.4215 47 1 4.8376 -5.9173 1.3019 48 1 4.9805 -4.2885 4.6674 49 1 3.6070 -5.1504 3.9333 50 1 5.9978 -6.3563 3.0350 51 1 7.4213 -9.2754 3.7969 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001698779708.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:10:46 Heat of formation + Delta-G solvation = -48.023275 kcal Electronic energy + Delta-G solvation = -29401.737173 eV Core-core repulsion = 25494.459999 eV Total energy + Delta-G solvation = -3907.277174 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.04253 -39.40156 -37.65806 -36.77164 -35.37329 -34.26463 -32.37391 -30.50518 -30.20437 -29.73714 -27.89100 -27.12016 -26.50164 -25.37789 -24.04813 -22.66332 -22.09224 -21.50727 -20.16866 -19.32782 -18.28843 -17.30737 -16.80597 -16.30205 -16.13255 -15.78678 -15.55207 -15.21254 -14.71226 -14.55298 -14.33308 -14.15316 -14.02591 -13.81214 -13.54486 -13.08586 -12.99785 -12.76408 -12.53698 -12.43916 -12.31658 -12.16195 -12.14654 -12.00658 -11.96931 -11.71289 -11.29181 -11.19315 -11.03572 -10.88629 -10.78506 -10.64449 -10.52768 -10.36482 -10.03384 -9.70284 -9.53327 -9.04338 -8.87447 -8.85084 -8.27198 -6.90281 -5.75546 -3.03604 1.11464 1.30555 2.81328 3.14280 3.24891 3.44892 3.50097 3.51775 3.67384 4.26142 4.51680 4.60946 4.69134 4.73310 4.82162 4.89736 4.90294 4.98213 5.08937 5.15303 5.23926 5.28227 5.31367 5.33910 5.43015 5.43840 5.50024 5.55094 5.59734 5.62259 5.75230 5.85439 5.88243 6.00164 6.02840 6.07707 6.16095 6.18466 6.23425 6.30405 6.34182 6.43735 6.60150 6.61647 6.69009 6.81094 6.90806 7.25085 7.64181 7.72137 8.38751 8.43771 9.54949 10.12693 10.47645 11.47506 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.024152 B = 0.002141 C = 0.002090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1159.059864 B =13076.534484 C =13396.934127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.302 6.302 3 C 0.158 3.842 4 C -0.213 4.213 5 C -0.082 4.082 6 C -0.162 4.162 7 C -0.079 4.079 8 C -0.092 4.092 9 C -0.032 4.032 10 C -0.141 4.141 11 C -0.145 4.145 12 C 0.528 3.472 13 O -0.530 6.530 14 N -0.725 5.725 15 C 0.129 3.871 16 C -0.110 4.110 17 H 0.075 0.925 18 C -0.140 4.140 19 C 0.161 3.839 20 N -0.731 5.731 21 C -0.237 4.237 22 H 0.070 0.930 23 C -0.016 4.016 24 N -0.935 5.935 25 Si 0.907 3.093 26 H -0.290 1.290 27 H -0.292 1.292 28 H -0.282 1.282 29 H 0.098 0.902 30 H 0.054 0.946 31 H 0.052 0.948 32 H 0.126 0.874 33 H 0.121 0.879 34 H 0.122 0.878 35 H 0.132 0.868 36 H 0.075 0.925 37 H 0.062 0.938 38 H 0.064 0.936 39 H 0.071 0.929 40 H 0.065 0.935 41 H 0.066 0.934 42 H 0.398 0.602 43 H 0.065 0.935 44 H 0.066 0.934 45 H 0.052 0.948 46 H 0.042 0.958 47 H 0.069 0.931 48 H 0.020 0.980 49 H 0.022 0.978 50 H 0.384 0.616 51 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.775 24.436 -14.931 29.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.215 6.215 3 C 0.112 3.888 4 C -0.232 4.232 5 C -0.100 4.100 6 C -0.181 4.181 7 C -0.097 4.097 8 C -0.093 4.093 9 C -0.035 4.035 10 C -0.199 4.199 11 C -0.202 4.202 12 C 0.313 3.687 13 O -0.406 6.406 14 N -0.377 5.377 15 C 0.005 3.995 16 C -0.129 4.129 17 H 0.094 0.906 18 C -0.198 4.198 19 C 0.032 3.968 20 N -0.375 5.375 21 C -0.369 4.369 22 H 0.088 0.912 23 C -0.211 4.211 24 N -0.584 5.584 25 Si 0.739 3.261 26 H -0.218 1.218 27 H -0.218 1.218 28 H -0.208 1.208 29 H 0.116 0.884 30 H 0.073 0.927 31 H 0.070 0.930 32 H 0.143 0.857 33 H 0.139 0.861 34 H 0.140 0.860 35 H 0.150 0.850 36 H 0.093 0.907 37 H 0.081 0.919 38 H 0.083 0.917 39 H 0.090 0.910 40 H 0.084 0.916 41 H 0.085 0.915 42 H 0.232 0.768 43 H 0.084 0.916 44 H 0.084 0.916 45 H 0.071 0.929 46 H 0.061 0.939 47 H 0.088 0.912 48 H 0.038 0.962 49 H 0.039 0.961 50 H 0.218 0.782 51 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -9.273 24.479 -14.122 29.743 hybrid contribution 0.144 -0.799 0.314 0.870 sum -9.130 23.680 -13.808 28.892 Atomic orbital electron populations 1.23030 0.78813 1.03912 1.00975 1.86131 1.20934 1.26526 1.87911 1.18730 0.91542 0.84339 0.94150 1.21183 0.99921 0.92408 1.09670 1.20899 0.94727 0.96821 0.97581 1.20974 0.93894 0.98194 1.04992 1.20972 1.00169 0.90885 0.97653 1.18690 0.90156 0.94106 1.06379 1.19530 0.96068 0.93019 0.94891 1.21913 1.03471 0.99092 0.95379 1.21973 0.92673 1.02644 1.02916 1.20177 0.79742 0.81372 0.87429 1.90681 1.36175 1.70122 1.43595 1.46005 1.51131 1.16892 1.23656 1.21359 1.00155 0.91028 0.86909 1.21543 1.00097 0.93453 0.97806 0.90629 1.21775 1.01273 1.00576 0.96126 1.20573 0.95138 0.88259 0.92783 1.42342 1.54270 1.20321 1.20590 1.19241 1.22274 0.99508 0.95830 0.91183 1.24738 0.99957 0.98529 0.97900 1.69659 1.33127 1.26258 1.29310 0.86176 0.76859 0.81047 0.82052 1.21752 1.21801 1.20772 0.88361 0.92696 0.92971 0.85658 0.86084 0.86023 0.85023 0.90652 0.91890 0.91687 0.91016 0.91637 0.91466 0.76765 0.91635 0.91573 0.92892 0.93914 0.91246 0.96187 0.96060 0.78214 0.93562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 9.81 101.05 0.99 1.23 16 2 O -0.30 -3.62 6.76 -33.43 -0.23 -3.85 16 3 C 0.16 1.89 5.71 -39.21 -0.22 1.66 16 4 C -0.21 -2.17 9.04 -39.43 -0.36 -2.52 16 5 C -0.08 -0.74 10.04 -39.61 -0.40 -1.14 16 6 C -0.16 -1.45 10.04 -39.56 -0.40 -1.85 16 7 C -0.08 -0.77 8.97 -39.60 -0.36 -1.12 16 8 C -0.09 -1.05 4.32 -104.47 -0.45 -1.51 16 9 C -0.03 -0.34 0.62 -156.81 -0.10 -0.43 16 10 C -0.14 -1.27 8.10 37.16 0.30 -0.97 16 11 C -0.14 -1.18 7.10 37.16 0.26 -0.92 16 12 C 0.53 7.21 5.74 -10.99 -0.06 7.15 16 13 O -0.53 -9.29 14.85 -8.45 -0.13 -9.42 16 14 N -0.72 -9.04 5.12 -60.29 -0.31 -9.35 16 15 C 0.13 1.87 5.06 -4.04 -0.02 1.85 16 16 C -0.11 -1.73 2.46 -90.62 -0.22 -1.96 16 17 H 0.08 1.20 8.14 -51.92 -0.42 0.78 16 18 C -0.14 -2.11 8.94 37.16 0.33 -1.78 16 19 C 0.16 3.25 5.65 -4.04 -0.02 3.23 16 20 N -0.73 -18.48 5.33 -59.91 -0.32 -18.80 16 21 C -0.24 -6.70 9.99 -15.06 -0.15 -6.85 16 22 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 23 C -0.02 -0.45 5.50 -17.43 -0.10 -0.55 16 24 N -0.93 -28.26 13.06 55.49 0.72 -27.54 16 25 Si 0.91 22.60 29.55 -169.99 -5.02 17.57 16 26 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 27 H -0.29 -7.30 7.11 56.52 0.40 -6.89 16 28 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 29 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.05 0.45 7.65 -51.93 -0.40 0.05 16 31 H 0.05 0.34 7.67 -51.93 -0.40 -0.06 16 32 H 0.13 1.03 6.30 -52.49 -0.33 0.69 16 33 H 0.12 0.79 8.06 -52.49 -0.42 0.37 16 34 H 0.12 0.80 8.06 -52.49 -0.42 0.38 16 35 H 0.13 1.00 5.89 -52.49 -0.31 0.70 16 36 H 0.07 0.78 6.11 -51.93 -0.32 0.46 16 37 H 0.06 0.49 7.25 -51.93 -0.38 0.11 16 38 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.07 0.46 7.52 -51.93 -0.39 0.07 16 40 H 0.06 0.57 7.51 -51.93 -0.39 0.18 16 41 H 0.07 0.49 8.00 -51.93 -0.42 0.08 16 42 H 0.40 4.11 6.58 -40.82 -0.27 3.84 16 43 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 44 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 45 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 46 H 0.04 0.52 7.18 -51.93 -0.37 0.15 16 47 H 0.07 1.21 7.18 -51.93 -0.37 0.84 16 48 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 49 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 50 H 0.38 10.07 6.85 -40.82 -0.28 9.79 16 51 H 0.25 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 402.18 15.07 6.06 6.06 Total: -1.00 -34.36 402.18 -8.58 -42.94 By element: Atomic # 1 Polarization: 17.26 SS G_CDS: -8.39 Total: 8.86 kcal Atomic # 6 Polarization: -5.51 SS G_CDS: -0.97 Total: -6.48 kcal Atomic # 7 Polarization: -55.78 SS G_CDS: 0.10 Total: -55.69 kcal Atomic # 8 Polarization: -12.92 SS G_CDS: -0.35 Total: -13.27 kcal Atomic # 14 Polarization: 22.60 SS G_CDS: -5.02 Total: 17.57 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -34.36 -8.58 -42.94 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698779708.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.086 kcal (2) G-P(sol) polarization free energy of solvation -34.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.937 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds