Wall clock time and date at job start Tue Mar 31 2020 19:10:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35897 * 116.99939 * 2 1 4 4 C 1.38754 * 120.05915 * 0.25458 * 3 2 1 5 5 C 1.38119 * 119.94426 * 180.31944 * 4 3 2 6 6 C 1.38287 * 120.05944 * 359.67534 * 5 4 3 7 7 C 1.38244 * 120.10867 * 0.02692 * 6 5 4 8 8 C 1.38168 * 120.05777 * 0.02562 * 7 6 5 9 9 C 1.50700 * 120.03166 * 179.97438 * 8 7 6 10 10 C 1.52995 * 109.47046 * 239.91088 * 9 8 7 11 11 C 1.53008 * 109.46672 * 359.90622 * 9 8 7 12 12 C 1.50701 * 109.47259 * 119.90566 * 9 8 7 13 13 O 1.21280 * 119.99555 * 354.05618 * 12 9 8 14 14 N 1.34769 * 119.99771 * 174.06071 * 12 9 8 15 15 C 1.46505 * 119.99847 * 180.02562 * 14 12 9 16 16 C 1.52997 * 109.47282 * 179.97438 * 15 14 12 17 17 H 1.09007 * 109.47048 * 54.99414 * 16 15 14 18 18 C 1.52998 * 109.47175 * 294.99586 * 16 15 14 19 19 C 1.53000 * 109.47451 * 174.99587 * 16 15 14 20 20 N 1.46498 * 109.47597 * 184.99912 * 19 16 15 21 21 C 1.36933 * 120.00037 * 179.97438 * 20 19 16 22 22 H 1.07994 * 120.00326 * 359.97438 * 21 20 19 23 23 C 1.38820 * 119.99739 * 179.97438 * 21 20 19 24 24 N 1.31619 * 119.99793 * 0.02562 * 23 21 20 25 25 Si 1.86799 * 119.99962 * 180.02562 * 23 21 20 26 26 H 1.48497 * 109.46998 * 90.00269 * 25 23 21 27 27 H 1.48496 * 109.46942 * 210.00206 * 25 23 21 28 28 H 1.48498 * 109.47149 * 330.00085 * 25 23 21 29 29 H 1.08997 * 109.47214 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47271 * 299.99831 * 1 2 3 31 31 H 1.08999 * 109.46890 * 59.99752 * 1 2 3 32 32 H 1.08001 * 120.02556 * 0.02562 * 4 3 2 33 33 H 1.08000 * 119.96979 * 179.70276 * 5 4 3 34 34 H 1.07994 * 119.94731 * 180.02562 * 6 5 4 35 35 H 1.07996 * 119.97292 * 179.97438 * 7 6 5 36 36 H 1.09001 * 109.46793 * 299.99488 * 10 9 8 37 37 H 1.09005 * 109.46916 * 180.02562 * 10 9 8 38 38 H 1.08996 * 109.47749 * 59.99895 * 10 9 8 39 39 H 1.09001 * 109.47266 * 300.00099 * 11 9 8 40 40 H 1.08997 * 109.46822 * 60.00421 * 11 9 8 41 41 H 1.09005 * 109.46653 * 179.97438 * 11 9 8 42 42 H 0.97003 * 120.00515 * 359.97438 * 14 12 9 43 43 H 1.09006 * 109.46388 * 299.99189 * 15 14 12 44 44 H 1.08994 * 109.47457 * 59.99372 * 15 14 12 45 45 H 1.08995 * 109.47324 * 300.00079 * 18 16 15 46 46 H 1.09002 * 109.46738 * 59.99894 * 18 16 15 47 47 H 1.08995 * 109.47465 * 180.02562 * 18 16 15 48 48 H 1.09003 * 109.46776 * 305.00032 * 19 16 15 49 49 H 1.08998 * 109.47122 * 64.99525 * 19 16 15 50 50 H 0.97003 * 119.99373 * 0.02562 * 20 19 16 51 51 H 0.97004 * 119.99586 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2914 2.3753 0.0053 5 6 1.9209 3.6047 -0.0013 6 6 3.3019 3.6758 -0.0066 7 6 4.0560 2.5171 -0.0057 8 6 3.4311 1.2848 -0.0001 9 6 4.2537 0.0221 0.0003 10 6 3.9216 -0.8033 -1.2444 11 6 5.7408 0.3822 -0.0084 12 6 3.9389 -0.7822 1.2352 13 8 3.2094 -0.3228 2.0883 14 7 4.4680 -2.0118 1.3916 15 6 4.1615 -2.7939 2.5919 16 6 4.8824 -4.1414 2.5204 17 1 5.9493 -3.9752 2.3706 18 6 4.3244 -4.9571 1.3525 19 6 4.6641 -4.9067 3.8272 20 7 5.4506 -6.1425 3.8068 21 6 5.4139 -6.9951 4.8777 22 1 4.8056 -6.7564 5.7375 23 6 6.1587 -8.1664 4.8581 24 7 6.9005 -8.4571 3.8104 25 14 6.1082 -9.3299 6.3186 26 1 5.0142 -10.3158 6.1283 27 1 7.4053 -10.0447 6.4271 28 1 5.8650 -8.5542 7.5613 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 0.2128 2.3204 0.0099 33 1 1.3340 4.5113 -0.0021 34 1 3.7922 4.6380 -0.0114 35 1 5.1344 2.5752 -0.0102 36 1 2.8622 -1.0598 -1.2381 37 1 4.5162 -1.7168 -1.2438 38 1 4.1493 -0.2216 -2.1376 39 1 5.9685 0.9640 -0.9017 40 1 5.9774 0.9702 0.8783 41 1 6.3358 -0.5311 -0.0077 42 1 5.0512 -2.3793 0.7091 43 1 4.4951 -2.2493 3.4753 44 1 3.0860 -2.9604 2.6523 45 1 3.2576 -5.1233 1.5023 46 1 4.4800 -4.4120 0.4215 47 1 4.8376 -5.9173 1.3019 48 1 4.9805 -4.2885 4.6674 49 1 3.6070 -5.1504 3.9333 50 1 5.9978 -6.3563 3.0350 51 1 7.4213 -9.2754 3.7969 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698779708.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:10:45 Heat of formation + Delta-G solvation = -69.075612 kcal Electronic energy + Delta-G solvation = -29402.650071 eV Core-core repulsion = 25494.459999 eV Total energy + Delta-G solvation = -3908.190072 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.86740 -40.35589 -38.49117 -38.10666 -36.22446 -35.91715 -33.99072 -31.91466 -31.14820 -30.66197 -28.55970 -27.78981 -27.76604 -27.09381 -25.03834 -24.24820 -22.87062 -22.48868 -21.48010 -20.39462 -19.26482 -18.92057 -17.91432 -17.34088 -16.95117 -16.71546 -16.56332 -16.42168 -16.12151 -15.60194 -15.43735 -15.28170 -15.19704 -14.93326 -14.66811 -14.47976 -14.18183 -13.82238 -13.58090 -13.53661 -13.24502 -13.14461 -13.10026 -12.95842 -12.79350 -12.76544 -12.67214 -12.39127 -12.19017 -12.16242 -12.00797 -11.95718 -11.88191 -11.70082 -11.65212 -11.45561 -10.94715 -10.63308 -10.01019 -9.77033 -9.00778 -8.99608 -7.95518 -5.23757 0.39792 0.58408 1.47432 1.48893 1.57442 1.77765 2.23490 2.46047 2.56763 2.91562 3.37936 3.52444 3.73243 3.80423 3.93824 3.97762 4.04297 4.08265 4.12147 4.21648 4.30027 4.35169 4.35893 4.46846 4.55279 4.58331 4.68753 4.71295 4.74243 4.75733 4.78820 4.86427 4.88414 4.92886 4.96324 5.05312 5.10638 5.12667 5.23584 5.32442 5.35105 5.43937 5.49409 5.49747 5.53113 5.54684 5.64536 5.93877 6.27181 6.52469 6.64223 7.33973 7.35703 8.08827 8.33889 9.27871 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.024152 B = 0.002141 C = 0.002090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1159.059864 B =13076.534484 C =13396.934127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.324 6.324 3 C 0.134 3.866 4 C -0.226 4.226 5 C -0.087 4.087 6 C -0.167 4.167 7 C -0.086 4.086 8 C -0.116 4.116 9 C -0.027 4.027 10 C -0.138 4.138 11 C -0.144 4.144 12 C 0.525 3.475 13 O -0.573 6.573 14 N -0.715 5.715 15 C 0.142 3.858 16 C -0.092 4.092 17 H 0.079 0.921 18 C -0.133 4.133 19 C 0.158 3.842 20 N -0.740 5.740 21 C -0.247 4.247 22 H 0.072 0.928 23 C -0.074 4.074 24 N -0.967 5.967 25 Si 0.973 3.027 26 H -0.287 1.287 27 H -0.293 1.293 28 H -0.272 1.272 29 H 0.106 0.894 30 H 0.051 0.949 31 H 0.070 0.930 32 H 0.138 0.862 33 H 0.145 0.855 34 H 0.146 0.854 35 H 0.151 0.849 36 H 0.058 0.942 37 H 0.076 0.924 38 H 0.079 0.921 39 H 0.094 0.906 40 H 0.058 0.942 41 H 0.076 0.924 42 H 0.410 0.590 43 H 0.055 0.945 44 H 0.057 0.943 45 H 0.049 0.951 46 H 0.075 0.925 47 H 0.043 0.957 48 H 0.018 0.982 49 H 0.019 0.981 50 H 0.377 0.623 51 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.576 25.806 -15.791 31.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.237 6.237 3 C 0.088 3.912 4 C -0.245 4.245 5 C -0.105 4.105 6 C -0.185 4.185 7 C -0.104 4.104 8 C -0.117 4.117 9 C -0.030 4.030 10 C -0.195 4.195 11 C -0.201 4.201 12 C 0.312 3.688 13 O -0.452 6.452 14 N -0.367 5.367 15 C 0.018 3.982 16 C -0.112 4.112 17 H 0.097 0.903 18 C -0.191 4.191 19 C 0.030 3.970 20 N -0.384 5.384 21 C -0.379 4.379 22 H 0.090 0.910 23 C -0.267 4.267 24 N -0.618 5.618 25 Si 0.802 3.198 26 H -0.214 1.214 27 H -0.220 1.220 28 H -0.197 1.197 29 H 0.124 0.876 30 H 0.070 0.930 31 H 0.089 0.911 32 H 0.155 0.845 33 H 0.163 0.837 34 H 0.164 0.836 35 H 0.168 0.832 36 H 0.077 0.923 37 H 0.094 0.906 38 H 0.098 0.902 39 H 0.112 0.888 40 H 0.077 0.923 41 H 0.095 0.905 42 H 0.248 0.752 43 H 0.074 0.926 44 H 0.075 0.925 45 H 0.068 0.932 46 H 0.094 0.906 47 H 0.062 0.938 48 H 0.036 0.964 49 H 0.037 0.963 50 H 0.210 0.790 51 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -9.084 25.869 -14.997 31.251 hybrid contribution 0.011 -1.133 0.586 1.276 sum -9.073 24.736 -14.410 30.031 Atomic orbital electron populations 1.23191 0.77653 1.04708 1.01697 1.86086 1.22349 1.27095 1.88187 1.19054 0.92211 0.84753 0.95158 1.21456 1.00732 0.92545 1.09773 1.21266 0.95269 0.97308 0.96674 1.21347 0.94049 0.99088 1.04011 1.21288 1.01311 0.90627 0.97172 1.18982 0.90366 0.95016 1.07334 1.19541 0.97450 0.92494 0.93490 1.21903 1.02664 0.99686 0.95245 1.22012 0.90922 1.03429 1.03705 1.20831 0.78676 0.81316 0.87946 1.90656 1.38075 1.71061 1.45374 1.45869 1.51103 1.16597 1.23181 1.21044 0.99269 0.90305 0.87600 1.21319 1.00536 0.93530 0.95776 0.90252 1.21703 1.00564 0.99547 0.97263 1.20707 0.94110 0.86911 0.95230 1.42497 1.54693 1.21508 1.19681 1.19615 1.21702 1.00017 0.96536 0.90974 1.25548 1.00169 1.00299 1.00653 1.69804 1.34130 1.26669 1.31153 0.85145 0.76540 0.78869 0.79237 1.21375 1.21997 1.19674 0.87588 0.93037 0.91133 0.84463 0.83689 0.83586 0.83164 0.92286 0.90554 0.90192 0.88761 0.92327 0.90472 0.75247 0.92646 0.92468 0.93182 0.90630 0.93771 0.96432 0.96278 0.79024 0.93935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.37 9.81 113.37 1.11 1.49 16 2 O -0.32 -7.83 6.76 -79.00 -0.53 -8.36 16 3 C 0.13 3.16 5.71 22.51 0.13 3.29 16 4 C -0.23 -4.46 9.04 22.37 0.20 -4.25 16 5 C -0.09 -1.43 10.04 22.25 0.22 -1.21 16 6 C -0.17 -2.65 10.04 22.28 0.22 -2.42 16 7 C -0.09 -1.54 8.97 22.25 0.20 -1.34 16 8 C -0.12 -2.55 4.32 -19.77 -0.09 -2.63 16 9 C -0.03 -0.52 0.62 -53.67 -0.03 -0.56 16 10 C -0.14 -2.25 8.10 71.98 0.58 -1.67 16 11 C -0.14 -2.02 7.10 71.98 0.51 -1.51 16 12 C 0.53 14.06 5.74 87.66 0.50 14.56 16 13 O -0.57 -20.34 14.85 10.37 0.15 -20.19 16 14 N -0.71 -17.03 5.12 -463.06 -2.37 -19.40 16 15 C 0.14 4.07 5.06 86.38 0.44 4.50 16 16 C -0.09 -2.86 2.46 -10.80 -0.03 -2.89 16 17 H 0.08 2.44 8.14 -2.38 -0.02 2.42 16 18 C -0.13 -3.89 8.94 71.98 0.64 -3.25 16 19 C 0.16 6.39 5.65 86.38 0.49 6.88 16 20 N -0.74 -37.77 5.33 -343.46 -1.83 -39.60 16 21 C -0.25 -13.99 9.99 84.04 0.84 -13.15 16 22 H 0.07 3.97 7.83 -2.91 -0.02 3.95 16 23 C -0.07 -4.30 5.50 84.86 0.47 -3.83 16 24 N -0.97 -58.98 13.06 21.65 0.28 -58.70 16 25 Si 0.97 46.52 29.55 68.60 2.03 48.54 16 26 H -0.29 -13.45 7.11 99.48 0.71 -12.75 16 27 H -0.29 -14.02 7.11 99.48 0.71 -13.31 16 28 H -0.27 -12.39 7.11 99.48 0.71 -11.69 16 29 H 0.11 1.53 8.14 -2.39 -0.02 1.51 16 30 H 0.05 0.87 7.65 -2.39 -0.02 0.85 16 31 H 0.07 0.88 7.67 -2.39 -0.02 0.86 16 32 H 0.14 2.17 6.30 -2.91 -0.02 2.15 16 33 H 0.15 1.56 8.06 -2.91 -0.02 1.54 16 34 H 0.15 1.50 8.06 -2.91 -0.02 1.48 16 35 H 0.15 1.95 5.89 -2.91 -0.02 1.93 16 36 H 0.06 1.18 6.11 -2.39 -0.01 1.17 16 37 H 0.08 1.00 7.25 -2.38 -0.02 0.98 16 38 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 39 H 0.09 0.91 7.52 -2.39 -0.02 0.89 16 40 H 0.06 0.91 7.51 -2.39 -0.02 0.90 16 41 H 0.08 0.92 8.00 -2.38 -0.02 0.90 16 42 H 0.41 7.61 6.58 -92.71 -0.61 7.00 16 43 H 0.06 1.71 8.14 -2.38 -0.02 1.69 16 44 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 45 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 46 H 0.07 1.69 7.18 -2.39 -0.02 1.67 16 47 H 0.04 1.53 7.18 -2.39 -0.02 1.51 16 48 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 49 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 50 H 0.38 20.05 6.85 -92.71 -0.64 19.42 16 51 H 0.25 14.86 8.31 -92.71 -0.77 14.09 16 Total: -1.00 -74.66 402.18 3.83 -70.83 By element: Atomic # 1 Polarization: 35.19 SS G_CDS: -0.31 Total: 34.88 kcal Atomic # 6 Polarization: -14.42 SS G_CDS: 6.42 Total: -8.01 kcal Atomic # 7 Polarization: -113.78 SS G_CDS: -3.92 Total: -117.70 kcal Atomic # 8 Polarization: -28.17 SS G_CDS: -0.38 Total: -28.55 kcal Atomic # 14 Polarization: 46.52 SS G_CDS: 2.03 Total: 48.54 kcal Total: -74.66 3.83 -70.83 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698779708.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.751 kcal (2) G-P(sol) polarization free energy of solvation -74.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.827 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds