Wall clock time and date at job start Tue Mar 31 2020 19:11:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53003 * 109.46664 * 2 1 4 4 C 1.50699 * 109.47235 * 119.99700 * 2 1 3 5 5 C 1.38266 * 119.94011 * 120.00179 * 4 2 1 6 6 C 1.38151 * 120.05094 * 179.97438 * 5 4 2 7 7 C 1.38730 * 119.94655 * 0.02562 * 6 5 4 8 8 O 1.35897 * 120.05803 * 180.02562 * 7 6 5 9 9 C 1.42902 * 117.00289 * 180.02562 * 8 7 6 10 10 C 1.50700 * 109.46917 * 179.97438 * 9 8 7 11 11 O 1.21277 * 120.00478 * 359.97438 * 10 9 8 12 12 N 1.34774 * 119.99623 * 179.97438 * 10 9 8 13 13 C 1.46497 * 120.00109 * 180.02562 * 12 10 9 14 14 C 1.53001 * 109.47391 * 179.97438 * 13 12 10 15 15 H 1.09001 * 109.47112 * 305.00167 * 14 13 12 16 16 C 1.53001 * 109.47100 * 64.99897 * 14 13 12 17 17 C 1.53003 * 109.47014 * 184.99488 * 14 13 12 18 18 N 1.46499 * 109.46708 * 174.99880 * 17 14 13 19 19 C 1.36935 * 119.99926 * 180.02562 * 18 17 14 20 20 H 1.08005 * 119.99877 * 359.97438 * 19 18 17 21 21 C 1.38811 * 120.00369 * 179.73019 * 19 18 17 22 22 N 1.31617 * 119.99773 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 120.00451 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47154 * 89.99247 * 23 21 19 25 25 H 1.48496 * 109.47375 * 209.99772 * 23 21 19 26 26 H 1.48502 * 109.46736 * 329.99467 * 23 21 19 27 27 C 1.38739 * 119.88702 * 0.26908 * 7 6 5 28 28 C 1.38143 * 119.94079 * 359.47138 * 27 7 6 29 29 H 1.09002 * 109.47650 * 299.99749 * 1 2 3 30 30 H 1.09002 * 109.47627 * 60.00417 * 1 2 3 31 31 H 1.09000 * 109.46732 * 180.02562 * 1 2 3 32 32 H 1.08992 * 109.47141 * 240.00136 * 2 1 3 33 33 H 1.09003 * 109.47196 * 299.99811 * 3 2 1 34 34 H 1.09001 * 109.47353 * 60.00024 * 3 2 1 35 35 H 1.08997 * 109.46838 * 180.02562 * 3 2 1 36 36 H 1.07992 * 119.97706 * 359.97438 * 5 4 2 37 37 H 1.07998 * 120.02160 * 179.97438 * 6 5 4 38 38 H 1.08996 * 109.47147 * 59.99468 * 9 8 7 39 39 H 1.09005 * 109.46511 * 299.99283 * 9 8 7 40 40 H 0.97005 * 120.00431 * 359.97438 * 12 10 9 41 41 H 1.09001 * 109.47266 * 59.99449 * 13 12 10 42 42 H 1.08997 * 109.46950 * 299.99791 * 13 12 10 43 43 H 1.08999 * 109.47109 * 59.99648 * 16 14 13 44 44 H 1.08996 * 109.47478 * 180.02562 * 16 14 13 45 45 H 1.09005 * 109.47003 * 300.00163 * 16 14 13 46 46 H 1.08998 * 109.46692 * 55.00382 * 17 14 13 47 47 H 1.08994 * 109.47584 * 295.00246 * 17 14 13 48 48 H 0.97005 * 120.00261 * 0.02562 * 18 17 14 49 49 H 0.97004 * 120.00382 * 180.02562 * 22 21 19 50 50 H 1.07996 * 120.02311 * 179.72537 * 27 7 6 51 51 H 1.08004 * 119.96962 * 180.23005 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0324 -0.7103 1.2305 5 6 2.8273 -1.8344 1.1022 6 6 3.2895 -2.4870 2.2287 7 6 2.9551 -2.0141 3.4893 8 8 3.4089 -2.6540 4.5989 9 6 3.0244 -2.1114 5.8638 10 6 3.6162 -2.9469 6.9696 11 8 4.2994 -3.9122 6.7011 12 7 3.3861 -2.6213 8.2570 13 6 3.9617 -3.4331 9.3320 14 6 3.5510 -2.8514 10.6863 15 1 3.8389 -1.8011 10.7329 16 6 2.0352 -2.9726 10.8548 17 6 4.2520 -3.6228 11.8063 18 7 3.9536 -2.9920 13.0944 19 6 4.4761 -3.5115 14.2486 20 1 5.1080 -4.3866 14.2093 21 6 4.1980 -2.9105 15.4686 22 7 3.4324 -1.8410 15.5159 23 14 4.9115 -3.6188 17.0430 24 1 6.2293 -2.9909 17.3156 25 1 3.9883 -3.3427 18.1729 26 1 5.0840 -5.0860 16.8920 27 6 2.1523 -0.8895 3.6152 28 6 1.6971 -0.2374 2.4857 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8899 33 1 1.6766 1.9564 -0.8900 34 1 1.6766 1.9564 0.8900 35 1 3.1299 1.4426 -0.0005 36 1 3.0870 -2.2024 0.1208 37 1 3.9100 -3.3652 2.1280 38 1 1.9376 -2.1170 5.9463 39 1 3.3899 -1.0877 5.9460 40 1 2.8399 -1.8489 8.4718 41 1 5.0486 -3.4278 9.2492 42 1 3.5961 -4.4566 9.2499 43 1 1.7472 -4.0229 10.8080 44 1 1.7425 -2.5579 11.8193 45 1 1.5357 -2.4231 10.0568 46 1 5.3286 -3.6111 11.6368 47 1 3.8967 -4.6532 11.8154 48 1 3.3858 -2.2062 13.1298 49 1 3.2383 -1.4208 16.3684 50 1 1.8869 -0.5221 4.5954 51 1 1.0752 0.6402 2.5832 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753622740.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:11:27 Heat of formation + Delta-G solvation = -58.551091 kcal Electronic energy + Delta-G solvation = -27146.677117 eV Core-core repulsion = 23238.943423 eV Total energy + Delta-G solvation = -3907.733694 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.76907 -39.72762 -38.29541 -36.82613 -35.14750 -34.43684 -32.61389 -31.44533 -30.39150 -29.75810 -28.38242 -27.57298 -26.36022 -25.14673 -23.71903 -22.97618 -22.29798 -20.76033 -20.43809 -19.89932 -18.70033 -17.63120 -16.92500 -16.69631 -16.44481 -15.88185 -15.73364 -15.22026 -14.79788 -14.74970 -14.47844 -14.28280 -13.96931 -13.88702 -13.70299 -13.64855 -13.35291 -13.08461 -12.90148 -12.76563 -12.68364 -12.50509 -12.30132 -12.08636 -11.70984 -11.61599 -11.21288 -11.17654 -11.09490 -10.99901 -10.93747 -10.74941 -10.60363 -10.46735 -10.11698 -9.93103 -9.69094 -9.35964 -9.16136 -8.89591 -8.41775 -6.94527 -5.79072 -3.07510 0.98263 1.06108 2.31875 2.40420 3.38444 3.42902 3.44128 3.48524 3.49871 4.25485 4.29062 4.40698 4.49282 4.57531 4.64102 4.66525 4.68172 4.76432 4.96881 4.98544 4.99725 5.11478 5.16419 5.18490 5.26240 5.32941 5.39236 5.42776 5.53229 5.55865 5.66393 5.75602 5.77334 5.79581 5.90663 5.92566 5.94025 6.01373 6.05470 6.18196 6.28845 6.32237 6.37466 6.41275 6.61327 6.73575 6.82924 7.01205 7.32251 7.68959 8.02603 8.40022 9.51465 10.08303 10.43094 11.43894 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.031792 B = 0.001436 C = 0.001398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 880.505102 B =19490.166929 C =20025.920629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.052 4.052 3 C -0.145 4.145 4 C -0.117 4.117 5 C -0.078 4.078 6 C -0.146 4.146 7 C 0.127 3.873 8 O -0.289 6.289 9 C 0.041 3.959 10 C 0.513 3.487 11 O -0.519 6.519 12 N -0.721 5.721 13 C 0.128 3.872 14 C -0.110 4.110 15 H 0.077 0.923 16 C -0.142 4.142 17 C 0.160 3.840 18 N -0.731 5.731 19 C -0.240 4.240 20 H 0.071 0.929 21 C -0.014 4.014 22 N -0.934 5.934 23 Si 0.908 3.092 24 H -0.290 1.290 25 H -0.291 1.291 26 H -0.282 1.282 27 C -0.208 4.208 28 C -0.074 4.074 29 H 0.056 0.944 30 H 0.057 0.943 31 H 0.056 0.944 32 H 0.076 0.924 33 H 0.057 0.943 34 H 0.056 0.944 35 H 0.056 0.944 36 H 0.128 0.872 37 H 0.132 0.868 38 H 0.093 0.907 39 H 0.093 0.907 40 H 0.402 0.598 41 H 0.071 0.929 42 H 0.071 0.929 43 H 0.053 0.947 44 H 0.070 0.930 45 H 0.042 0.958 46 H 0.021 0.979 47 H 0.023 0.977 48 H 0.384 0.616 49 H 0.255 0.745 50 H 0.128 0.872 51 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.829 6.326 -32.955 34.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.071 4.071 3 C -0.202 4.202 4 C -0.117 4.117 5 C -0.096 4.096 6 C -0.164 4.164 7 C 0.081 3.919 8 O -0.201 6.201 9 C -0.038 4.038 10 C 0.297 3.703 11 O -0.394 6.394 12 N -0.374 5.374 13 C 0.005 3.995 14 C -0.130 4.130 15 H 0.096 0.904 16 C -0.199 4.199 17 C 0.032 3.968 18 N -0.375 5.375 19 C -0.371 4.371 20 H 0.089 0.911 21 C -0.209 4.209 22 N -0.583 5.583 23 Si 0.739 3.261 24 H -0.217 1.217 25 H -0.218 1.218 26 H -0.207 1.207 27 C -0.227 4.227 28 C -0.092 4.092 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.075 0.925 32 H 0.095 0.905 33 H 0.076 0.924 34 H 0.075 0.925 35 H 0.075 0.925 36 H 0.146 0.854 37 H 0.150 0.850 38 H 0.111 0.889 39 H 0.111 0.889 40 H 0.236 0.764 41 H 0.089 0.911 42 H 0.089 0.911 43 H 0.073 0.927 44 H 0.089 0.911 45 H 0.061 0.939 46 H 0.039 0.961 47 H 0.041 0.959 48 H 0.218 0.782 49 H 0.065 0.935 50 H 0.146 0.854 51 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -6.112 5.318 -33.005 33.985 hybrid contribution -0.213 0.520 1.267 1.386 sum -6.325 5.838 -31.738 32.885 Atomic orbital electron populations 1.21873 0.94432 1.02043 1.01882 1.20058 0.95844 0.95940 0.95246 1.21873 1.01296 0.95183 1.01882 1.19774 1.00241 0.96980 0.94706 1.20875 0.96289 0.94505 0.97908 1.20450 1.04170 1.02489 0.89319 1.19073 0.94107 0.91853 0.86848 1.86165 1.70198 1.52099 1.11680 1.22489 1.00865 0.97920 0.82489 1.19952 0.81462 0.85499 0.83428 1.90762 1.37696 1.27700 1.83195 1.45898 1.53947 1.32516 1.05063 1.21467 0.98545 0.94698 0.84813 1.21564 0.96933 1.01117 0.93351 0.90437 1.21800 0.94430 1.01747 1.01957 1.20575 0.96208 0.94820 0.85198 1.42328 1.60199 1.34417 1.00575 1.19246 1.23949 1.08862 0.85029 0.91132 1.24728 1.00530 0.98002 0.97690 1.69653 1.41606 1.22214 1.24855 0.86179 0.78238 0.78366 0.83359 1.21717 1.21770 1.20732 1.21260 1.03406 0.98012 0.99979 1.20745 0.98257 0.98861 0.91314 0.92497 0.92436 0.92505 0.90547 0.92443 0.92488 0.92499 0.85410 0.84980 0.88938 0.88913 0.76374 0.91099 0.91088 0.92745 0.91074 0.93944 0.96072 0.95935 0.78217 0.93534 0.85384 0.85841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.70 9.01 37.16 0.33 -0.37 16 2 C -0.05 -0.28 3.09 -91.77 -0.28 -0.56 16 3 C -0.15 -0.71 9.01 37.16 0.33 -0.37 16 4 C -0.12 -0.83 4.78 -104.60 -0.50 -1.33 16 5 C -0.08 -0.59 9.66 -39.60 -0.38 -0.97 16 6 C -0.15 -1.36 9.99 -39.43 -0.39 -1.75 16 7 C 0.13 1.28 6.69 -39.21 -0.26 1.02 16 8 O -0.29 -3.44 9.67 -39.33 -0.38 -3.82 16 9 C 0.04 0.37 5.22 36.01 0.19 0.56 16 10 C 0.51 6.33 7.91 -10.99 -0.09 6.24 16 11 O -0.52 -8.90 16.50 -14.35 -0.24 -9.13 16 12 N -0.72 -7.74 5.28 -60.30 -0.32 -8.05 16 13 C 0.13 1.69 5.06 -4.04 -0.02 1.67 16 14 C -0.11 -1.62 2.46 -90.62 -0.22 -1.85 16 15 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 16 C -0.14 -1.99 8.94 37.16 0.33 -1.66 16 17 C 0.16 3.11 5.65 -4.04 -0.02 3.09 16 18 N -0.73 -18.03 5.33 -59.91 -0.32 -18.35 16 19 C -0.24 -6.67 9.99 -15.06 -0.15 -6.82 16 20 H 0.07 1.92 7.83 -52.48 -0.41 1.50 16 21 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 22 N -0.93 -27.88 13.06 55.49 0.72 -27.16 16 23 Si 0.91 22.32 29.55 -169.99 -5.02 17.30 16 24 H -0.29 -7.11 7.11 56.52 0.40 -6.70 16 25 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 26 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 27 C -0.21 -1.68 9.04 -39.43 -0.36 -2.04 16 28 C -0.07 -0.53 8.70 -39.61 -0.34 -0.88 16 29 H 0.06 0.27 7.38 -51.93 -0.38 -0.11 16 30 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 31 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.08 0.37 7.87 -51.93 -0.41 -0.04 16 33 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 34 H 0.06 0.27 7.39 -51.93 -0.38 -0.11 16 35 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 36 H 0.13 0.70 7.94 -52.49 -0.42 0.28 16 37 H 0.13 1.16 8.06 -52.49 -0.42 0.74 16 38 H 0.09 0.59 7.65 -51.93 -0.40 0.20 16 39 H 0.09 0.60 7.67 -51.93 -0.40 0.20 16 40 H 0.40 3.16 7.66 -40.82 -0.31 2.85 16 41 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 42 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 43 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 44 H 0.07 1.18 7.18 -51.93 -0.37 0.81 16 45 H 0.04 0.46 7.18 -51.93 -0.37 0.09 16 46 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 47 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 48 H 0.38 9.82 6.85 -40.82 -0.28 9.54 16 49 H 0.25 7.37 8.31 -40.82 -0.34 7.03 16 50 H 0.13 0.77 6.30 -52.49 -0.33 0.44 16 51 H 0.12 0.68 7.09 -52.48 -0.37 0.31 16 LS Contribution 415.20 15.07 6.26 6.26 Total: -1.00 -34.14 415.20 -9.86 -44.00 By element: Atomic # 1 Polarization: 14.09 SS G_CDS: -8.63 Total: 5.47 kcal Atomic # 6 Polarization: -4.57 SS G_CDS: -1.93 Total: -6.51 kcal Atomic # 7 Polarization: -53.65 SS G_CDS: 0.09 Total: -53.56 kcal Atomic # 8 Polarization: -12.34 SS G_CDS: -0.62 Total: -12.95 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.02 Total: 17.30 kcal Total LS contribution 6.26 Total: 6.26 kcal Total: -34.14 -9.86 -44.00 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753622740.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.552 kcal (2) G-P(sol) polarization free energy of solvation -34.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.999 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds