Wall clock time and date at job start Tue Mar 31 2020 19:10:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35900 * 117.00242 * 2 1 4 4 C 1.38750 * 120.05310 * 359.72113 * 3 2 1 5 5 C 1.38122 * 119.94605 * 179.70580 * 4 3 2 6 6 C 1.38290 * 120.05216 * 0.59086 * 5 4 3 7 7 C 1.38244 * 120.11256 * 359.68547 * 6 5 4 8 8 C 1.50700 * 119.97305 * 180.02562 * 7 6 5 9 9 C 1.52995 * 109.47084 * 5.54215 * 8 7 6 10 10 C 1.52997 * 109.47036 * 125.54412 * 8 7 6 11 11 C 1.50702 * 109.47030 * 245.54516 * 8 7 6 12 12 O 1.21280 * 120.00212 * 5.52689 * 11 8 7 13 13 N 1.34778 * 119.99916 * 185.52672 * 11 8 7 14 14 C 1.46503 * 119.99991 * 180.02562 * 13 11 8 15 15 C 1.53000 * 109.47133 * 180.02562 * 14 13 11 16 16 H 1.09000 * 109.47068 * 54.99336 * 15 14 13 17 17 C 1.53002 * 109.46518 * 294.99462 * 15 14 13 18 18 C 1.52997 * 109.46956 * 174.99954 * 15 14 13 19 19 N 1.46498 * 109.47054 * 184.99461 * 18 15 14 20 20 C 1.36938 * 120.00181 * 179.97438 * 19 18 15 21 21 H 1.08000 * 119.99887 * 0.02562 * 20 19 18 22 22 C 1.38814 * 119.99792 * 179.97438 * 20 19 18 23 23 N 1.31623 * 119.99700 * 180.02562 * 22 20 19 24 24 Si 1.86795 * 120.00368 * 0.02562 * 22 20 19 25 25 H 1.48505 * 109.47124 * 89.99484 * 24 22 20 26 26 H 1.48497 * 109.47117 * 209.99852 * 24 22 20 27 27 H 1.48505 * 109.47148 * 329.99797 * 24 22 20 28 28 C 1.38165 * 120.05455 * 0.02562 * 7 6 5 29 29 H 1.08997 * 109.47245 * 300.00469 * 1 2 3 30 30 H 1.08996 * 109.46712 * 60.00619 * 1 2 3 31 31 H 1.09000 * 109.47116 * 180.02562 * 1 2 3 32 32 H 1.08008 * 120.02822 * 359.97438 * 4 3 2 33 33 H 1.08003 * 119.97935 * 180.30080 * 5 4 3 34 34 H 1.08001 * 119.94445 * 179.69990 * 6 5 4 35 35 H 1.09004 * 109.47232 * 60.00325 * 9 8 7 36 36 H 1.09002 * 109.47136 * 179.97438 * 9 8 7 37 37 H 1.08991 * 109.47759 * 300.00264 * 9 8 7 38 38 H 1.09002 * 109.47271 * 60.00095 * 10 8 7 39 39 H 1.09007 * 109.46803 * 179.97438 * 10 8 7 40 40 H 1.08991 * 109.47386 * 300.00271 * 10 8 7 41 41 H 0.96999 * 119.99750 * 0.02562 * 13 11 8 42 42 H 1.09006 * 109.46451 * 299.99715 * 14 13 11 43 43 H 1.08995 * 109.46987 * 59.99297 * 14 13 11 44 44 H 1.09001 * 109.46864 * 180.02562 * 17 15 14 45 45 H 1.08996 * 109.47466 * 300.00204 * 17 15 14 46 46 H 1.08998 * 109.47163 * 60.00189 * 17 15 14 47 47 H 1.09000 * 109.47060 * 304.99612 * 18 15 14 48 48 H 1.09000 * 109.47158 * 64.99683 * 18 15 14 49 49 H 0.97006 * 119.99829 * 0.02562 * 19 18 15 50 50 H 0.96993 * 119.99689 * 180.02562 * 23 22 20 51 51 H 1.08001 * 120.03049 * 180.02562 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2915 2.3752 -0.0058 5 6 1.9209 3.6047 0.0003 6 6 3.3019 3.6758 0.0000 7 6 4.0560 2.5171 0.0000 8 6 5.5608 2.5982 0.0002 9 6 5.9928 4.0592 0.1396 10 6 6.1150 1.7882 1.1739 11 6 6.0942 2.0379 -1.2931 12 8 5.3275 1.7074 -2.1728 13 7 7.4233 1.9042 -1.4723 14 6 7.9419 1.3601 -2.7298 15 6 9.4702 1.3141 -2.6738 16 1 9.7848 0.7522 -1.7945 17 6 10.0205 2.7394 -2.5921 18 6 10.0063 0.6319 -3.9340 19 7 11.4596 0.4807 -3.8267 20 6 12.1636 -0.1080 -4.8430 21 1 11.6476 -0.4605 -5.7239 22 6 13.5406 -0.2508 -4.7415 23 7 14.2174 -0.8162 -5.7186 24 14 14.4332 0.3595 -3.2183 25 1 14.4954 -0.7301 -2.2112 26 1 15.8112 0.7740 -3.5849 27 1 13.7025 1.5197 -2.6479 28 6 3.4312 1.2848 -0.0001 29 1 -0.3633 0.5139 0.8899 30 1 -0.3632 0.5137 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 0.2128 2.3203 -0.0108 33 1 1.3340 4.5114 0.0007 34 1 3.7922 4.6381 -0.0001 35 1 5.6070 4.4645 1.0751 36 1 7.0812 4.1179 0.1402 37 1 5.5980 4.6363 -0.6965 38 1 5.8073 0.7473 1.0746 39 1 7.2035 1.8465 1.1737 40 1 5.7292 2.1934 2.1093 41 1 8.0365 2.1683 -0.7686 42 1 7.5536 0.3522 -2.8770 43 1 7.6271 1.9953 -3.5577 44 1 11.1093 2.7068 -2.5527 45 1 9.7058 3.3014 -3.4714 46 1 9.6385 3.2255 -1.6944 47 1 9.5456 -0.3503 -4.0394 48 1 9.7678 1.2407 -4.8061 49 1 11.9230 0.7970 -3.0353 50 1 15.1795 -0.9163 -5.6475 51 1 4.0207 0.3799 0.0003 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753637578.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:10:53 Heat of formation + Delta-G solvation = -46.232059 kcal Electronic energy + Delta-G solvation = -28705.370615 eV Core-core repulsion = 24798.171113 eV Total energy + Delta-G solvation = -3907.199501 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.99204 -39.85377 -38.00120 -36.88634 -35.25466 -34.44123 -32.43764 -31.15897 -30.54547 -29.62844 -28.06112 -27.26824 -26.72941 -25.68579 -24.00349 -22.72957 -22.19921 -21.40812 -20.37881 -19.56549 -18.24163 -17.52348 -16.90411 -16.43891 -16.24818 -16.13836 -15.99337 -15.50286 -14.87163 -14.56621 -14.52391 -14.23706 -13.94854 -13.86359 -13.72066 -13.22504 -13.05061 -12.85793 -12.76992 -12.58590 -12.51869 -12.45685 -12.38469 -12.20427 -12.04076 -11.78254 -11.45066 -11.35730 -11.30677 -11.05053 -10.94939 -10.75433 -10.61909 -10.58339 -10.13992 -9.74719 -9.57896 -9.07113 -9.04437 -8.90381 -8.42346 -7.23459 -5.76770 -3.12394 1.05259 1.23995 2.57419 2.97128 3.07155 3.35032 3.37619 3.43813 3.59205 4.13604 4.41284 4.52558 4.58116 4.60470 4.67400 4.78110 4.79289 4.81688 4.89675 5.01512 5.09575 5.12424 5.16574 5.23695 5.25715 5.27178 5.35604 5.42517 5.48250 5.53908 5.65831 5.71201 5.73969 5.76729 5.78337 5.88325 5.91717 6.05421 6.09115 6.18029 6.23596 6.34397 6.41734 6.45663 6.48860 6.66003 6.75171 7.14511 7.43307 7.99719 8.16479 8.42164 9.21004 9.93053 10.12831 11.41703 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.022100 B = 0.002055 C = 0.001968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1266.642487 B =13625.326289 C =14223.916385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.318 6.318 3 C 0.126 3.874 4 C -0.210 4.210 5 C -0.082 4.082 6 C -0.151 4.151 7 C -0.019 4.019 8 C -0.043 4.043 9 C -0.143 4.143 10 C -0.141 4.141 11 C 0.520 3.480 12 O -0.528 6.528 13 N -0.724 5.724 14 C 0.127 3.873 15 C -0.114 4.114 16 H 0.076 0.924 17 C -0.143 4.143 18 C 0.165 3.835 19 N -0.754 5.754 20 C -0.243 4.243 21 H 0.090 0.910 22 C 0.003 3.997 23 N -0.934 5.934 24 Si 0.885 3.115 25 H -0.284 1.284 26 H -0.291 1.291 27 H -0.278 1.278 28 C -0.123 4.123 29 H 0.054 0.946 30 H 0.055 0.945 31 H 0.099 0.901 32 H 0.125 0.875 33 H 0.124 0.876 34 H 0.128 0.872 35 H 0.073 0.927 36 H 0.066 0.934 37 H 0.067 0.933 38 H 0.066 0.934 39 H 0.066 0.934 40 H 0.071 0.929 41 H 0.399 0.601 42 H 0.070 0.930 43 H 0.070 0.930 44 H 0.063 0.937 45 H 0.057 0.943 46 H 0.044 0.956 47 H 0.030 0.970 48 H 0.030 0.970 49 H 0.361 0.639 50 H 0.259 0.741 51 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.980 10.558 18.822 34.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.231 6.231 3 C 0.081 3.919 4 C -0.228 4.228 5 C -0.101 4.101 6 C -0.169 4.169 7 C -0.019 4.019 8 C -0.046 4.046 9 C -0.200 4.200 10 C -0.198 4.198 11 C 0.305 3.695 12 O -0.404 6.404 13 N -0.376 5.376 14 C 0.003 3.997 15 C -0.133 4.133 16 H 0.094 0.906 17 C -0.201 4.201 18 C 0.037 3.963 19 N -0.400 5.400 20 C -0.373 4.373 21 H 0.108 0.892 22 C -0.193 4.193 23 N -0.582 5.582 24 Si 0.716 3.284 25 H -0.211 1.211 26 H -0.217 1.217 27 H -0.204 1.204 28 C -0.141 4.141 29 H 0.072 0.928 30 H 0.073 0.927 31 H 0.117 0.883 32 H 0.143 0.857 33 H 0.142 0.858 34 H 0.146 0.854 35 H 0.092 0.908 36 H 0.085 0.915 37 H 0.086 0.914 38 H 0.085 0.915 39 H 0.085 0.915 40 H 0.090 0.910 41 H 0.233 0.767 42 H 0.088 0.912 43 H 0.088 0.912 44 H 0.082 0.918 45 H 0.076 0.924 46 H 0.063 0.937 47 H 0.048 0.952 48 H 0.048 0.952 49 H 0.194 0.806 50 H 0.069 0.931 51 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -27.395 9.997 17.930 34.233 hybrid contribution 0.817 0.605 1.244 1.607 sum -26.578 10.603 19.175 34.445 Atomic orbital electron populations 1.23041 0.78495 1.03919 1.01231 1.86085 1.21283 1.26983 1.88772 1.18932 0.92166 0.84156 0.96626 1.21208 0.99863 0.92490 1.09278 1.20862 0.94446 0.96898 0.97847 1.21028 0.93702 0.98100 1.04095 1.19021 0.92933 0.92589 0.97374 1.19737 0.92435 0.97992 0.94439 1.21947 1.01940 0.92985 1.03127 1.21929 1.01126 1.00197 0.96592 1.20277 0.82345 0.78310 0.88543 1.90742 1.56822 1.48958 1.43850 1.46039 1.06730 1.65617 1.19198 1.21396 0.93343 0.99395 0.85531 1.21602 0.93062 0.97713 1.00963 0.90606 1.21816 1.01897 0.95435 1.00928 1.20553 0.85138 0.97091 0.93532 1.42684 1.02199 1.73769 1.21354 1.19070 0.90095 1.30624 0.97523 0.89178 1.24685 0.96184 1.00867 0.97560 1.69703 1.07094 1.49149 1.32255 0.86537 0.79462 0.78635 0.83782 1.21105 1.21734 1.20404 1.20136 0.91251 0.98163 1.04595 0.92767 0.92662 0.88261 0.85681 0.85812 0.85421 0.90831 0.91482 0.91428 0.91544 0.91478 0.91008 0.76657 0.91170 0.91194 0.91795 0.92383 0.93687 0.95217 0.95163 0.80649 0.93067 0.85547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 9.81 101.05 0.99 1.17 16 2 O -0.32 -3.44 10.50 -19.43 -0.20 -3.65 16 3 C 0.13 1.42 6.69 -39.22 -0.26 1.16 16 4 C -0.21 -1.95 9.04 -39.43 -0.36 -2.30 16 5 C -0.08 -0.71 10.04 -39.60 -0.40 -1.11 16 6 C -0.15 -1.40 8.99 -39.56 -0.36 -1.76 16 7 C -0.02 -0.20 4.24 -104.65 -0.44 -0.64 16 8 C -0.04 -0.39 0.72 -156.82 -0.11 -0.50 16 9 C -0.14 -0.97 7.10 37.15 0.26 -0.71 16 10 C -0.14 -1.02 8.07 37.16 0.30 -0.72 16 11 C 0.52 6.37 6.35 -10.98 -0.07 6.31 16 12 O -0.53 -8.73 15.53 5.56 0.09 -8.64 16 13 N -0.72 -7.87 5.12 -60.29 -0.31 -8.18 16 14 C 0.13 1.66 5.06 -4.04 -0.02 1.64 16 15 C -0.11 -1.62 2.46 -90.62 -0.22 -1.84 16 16 H 0.08 1.05 8.14 -51.93 -0.42 0.62 16 17 C -0.14 -1.91 8.94 37.16 0.33 -1.58 16 18 C 0.16 3.11 5.65 -4.04 -0.02 3.09 16 19 N -0.75 -17.67 5.13 -59.91 -0.31 -17.98 16 20 C -0.24 -6.91 10.47 -15.06 -0.16 -7.07 16 21 H 0.09 2.75 8.06 -52.49 -0.42 2.33 16 22 C 0.00 0.08 5.50 -17.43 -0.10 -0.02 16 23 N -0.93 -29.46 13.97 55.49 0.78 -28.69 16 24 Si 0.89 21.94 27.73 -169.99 -4.71 17.23 16 25 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 26 H -0.29 -7.32 7.11 56.52 0.40 -6.91 16 27 H -0.28 -6.38 6.52 56.52 0.37 -6.01 16 28 C -0.12 -1.46 8.30 -39.43 -0.33 -1.78 16 29 H 0.05 0.27 7.67 -51.93 -0.40 -0.13 16 30 H 0.05 0.31 7.65 -51.93 -0.40 -0.08 16 31 H 0.10 0.45 8.14 -51.93 -0.42 0.02 16 32 H 0.13 0.86 6.30 -52.48 -0.33 0.53 16 33 H 0.12 0.75 8.06 -52.48 -0.42 0.33 16 34 H 0.13 0.93 5.90 -52.49 -0.31 0.62 16 35 H 0.07 0.39 7.77 -51.93 -0.40 -0.02 16 36 H 0.07 0.39 7.97 -51.93 -0.41 -0.03 16 37 H 0.07 0.50 7.25 -51.93 -0.38 0.13 16 38 H 0.07 0.54 7.10 -51.93 -0.37 0.17 16 39 H 0.07 0.39 7.27 -51.92 -0.38 0.02 16 40 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 41 H 0.40 3.38 6.57 -40.82 -0.27 3.11 16 42 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 43 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 44 H 0.06 0.98 7.18 -51.93 -0.37 0.61 16 45 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 46 H 0.04 0.47 7.18 -51.93 -0.37 0.09 16 47 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 48 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 49 H 0.36 8.14 4.71 -40.82 -0.19 7.95 16 50 H 0.26 7.77 8.31 -40.82 -0.34 7.43 16 51 H 0.13 1.54 7.25 -52.49 -0.38 1.16 16 LS Contribution 403.49 15.07 6.08 6.08 Total: -1.00 -35.43 403.49 -7.91 -43.34 By element: Atomic # 1 Polarization: 15.51 SS G_CDS: -8.36 Total: 7.15 kcal Atomic # 6 Polarization: -5.71 SS G_CDS: -0.96 Total: -6.67 kcal Atomic # 7 Polarization: -55.01 SS G_CDS: 0.16 Total: -54.85 kcal Atomic # 8 Polarization: -12.17 SS G_CDS: -0.12 Total: -12.28 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -4.71 Total: 17.23 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -35.43 -7.91 -43.34 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753637578.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.888 kcal (2) G-P(sol) polarization free energy of solvation -35.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.344 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds