Wall clock time and date at job start Tue Mar 31 2020 18:04:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46897 * 109.47314 * 2 1 4 4 C 1.46956 * 111.00131 * 189.99721 * 3 2 1 5 5 C 1.53048 * 109.36746 * 183.18905 * 4 3 2 6 6 N 1.46963 * 109.36060 * 301.60259 * 5 4 3 7 7 C 1.46905 * 110.99923 * 183.18534 * 6 5 4 8 8 C 1.53005 * 109.47124 * 77.33899 * 7 6 5 9 9 H 1.09003 * 109.47098 * 305.33388 * 8 7 6 10 10 O 1.42900 * 109.46804 * 65.32584 * 8 7 6 11 11 C 1.52991 * 109.47303 * 185.32682 * 8 7 6 12 12 O 1.42900 * 109.47090 * 175.00334 * 11 8 7 13 13 C 1.35681 * 117.00018 * 180.02562 * 12 11 8 14 14 C 1.39316 * 119.81556 * 359.71774 * 13 12 11 15 15 C 1.36435 * 120.18342 * 179.76686 * 14 13 12 16 16 C 1.40839 * 119.81049 * 0.51292 * 15 14 13 17 17 C 1.41212 * 120.17688 * 179.72025 * 16 15 14 18 18 H 1.08001 * 120.00101 * 25.18245 * 17 16 15 19 19 C 1.39892 * 119.99835 * 205.17708 * 17 16 15 20 20 N 1.30875 * 119.99961 * 15.44738 * 19 17 16 21 21 Si 1.86801 * 119.99908 * 195.44345 * 19 17 16 22 22 H 1.48497 * 109.47127 * 60.00407 * 21 19 17 23 23 H 1.48501 * 109.46830 * 180.02562 * 21 19 17 24 24 H 1.48497 * 109.47149 * 300.00163 * 21 19 17 25 25 C 1.40829 * 119.64256 * 359.74098 * 16 15 14 26 26 C 1.36448 * 119.81161 * 0.02562 * 25 16 15 27 27 C 1.46956 * 110.88107 * 59.31994 * 6 5 4 28 28 C 1.46955 * 111.00182 * 313.80031 * 3 2 1 29 29 H 1.08997 * 109.47098 * 60.00042 * 1 2 3 30 30 H 1.09000 * 109.46899 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.46805 * 299.99994 * 1 2 3 32 32 H 1.08999 * 109.46805 * 240.00006 * 2 1 3 33 33 H 1.09003 * 109.47204 * 120.00393 * 2 1 3 34 34 H 1.09006 * 109.48610 * 63.22372 * 4 3 2 35 35 H 1.09000 * 109.49076 * 303.16019 * 4 3 2 36 36 H 1.08998 * 109.49334 * 181.63920 * 5 4 3 37 37 H 1.09003 * 109.49064 * 61.56570 * 5 4 3 38 38 H 1.09001 * 109.47116 * 317.34368 * 7 6 5 39 39 H 1.08990 * 109.47453 * 197.34256 * 7 6 5 40 40 H 0.96704 * 114.00209 * 59.99756 * 10 8 7 41 41 H 1.09006 * 109.47217 * 295.00353 * 11 8 7 42 42 H 1.08997 * 109.47367 * 55.00381 * 11 8 7 43 43 H 1.07998 * 119.90596 * 0.02751 * 14 13 12 44 44 H 1.08004 * 120.09746 * 180.25868 * 15 14 13 45 45 H 0.97001 * 120.00086 * 180.02562 * 20 19 17 46 46 H 1.07999 * 120.09291 * 179.97438 * 25 16 15 47 47 H 1.07996 * 119.90854 * 179.97438 * 26 25 16 48 48 H 1.08997 * 109.49127 * 60.64532 * 27 6 5 49 49 H 1.09000 * 109.48785 * 180.70758 * 27 6 5 50 50 H 1.08999 * 109.48938 * 296.77831 * 28 3 2 51 51 H 1.08997 * 109.48697 * 56.83952 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 3.4691 1.4311 -0.2382 5 6 3.9518 2.8809 -0.1516 6 7 3.2320 3.6939 -1.1419 7 6 3.7217 5.0790 -1.1419 8 6 5.0558 5.1483 -1.8879 9 1 5.7544 4.4354 -1.4499 10 8 4.8487 4.8274 -3.2649 11 6 5.6308 6.5615 -1.7744 12 8 6.9292 6.5967 -2.3702 13 6 7.5827 7.7857 -2.3532 14 6 6.9779 8.9003 -1.7764 15 6 7.6301 10.0984 -1.7510 16 6 8.9139 10.2089 -2.3196 17 6 9.5935 11.4466 -2.3028 18 1 9.3611 12.1800 -1.5448 19 6 10.5678 11.7227 -3.2679 20 7 10.6442 10.9892 -4.3491 21 14 11.7599 13.1382 -3.0133 22 1 12.5403 12.9108 -1.7706 23 1 12.6855 13.2202 -4.1717 24 1 11.0011 14.4092 -2.8958 25 6 9.5159 9.0785 -2.9053 26 6 8.8520 7.8865 -2.9182 27 6 1.7827 3.6478 -0.9036 28 6 1.3001 2.1981 -0.9902 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 3.6876 1.0336 -1.2294 35 1 3.9807 0.8319 0.5151 36 1 5.0216 2.9209 -0.3567 37 1 3.7580 3.2697 0.8481 38 1 3.8621 5.4147 -0.1144 39 1 2.9943 5.7215 -1.6378 40 1 4.2363 5.4219 -3.7195 41 1 4.9751 7.2630 -2.2902 42 1 5.7057 6.8399 -0.7232 43 1 5.9917 8.8147 -1.3445 44 1 7.1616 10.9606 -1.2998 45 1 11.3200 11.1804 -5.0182 46 1 10.4999 9.1551 -3.3438 47 1 9.3120 7.0188 -3.3673 48 1 1.5642 4.0452 0.0875 49 1 1.2711 4.2470 -1.6569 50 1 1.4938 1.8094 -1.9899 51 1 0.2303 2.1580 -0.7852 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000025865813.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:04:08 Heat of formation + Delta-G solvation = -54.886128 kcal Electronic energy + Delta-G solvation = -28213.303335 eV Core-core repulsion = 24305.728565 eV Total energy + Delta-G solvation = -3907.574770 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -39.87224 -38.92989 -37.56734 -36.23524 -35.47775 -33.29749 -31.84589 -31.32389 -30.20051 -29.45657 -28.93259 -27.03745 -25.04751 -24.35611 -23.70851 -22.27131 -21.49945 -20.63539 -20.57070 -20.00487 -17.36882 -17.26439 -16.66949 -16.37663 -16.07056 -15.57311 -15.27915 -15.15174 -15.11620 -15.01092 -14.54050 -14.14218 -14.04977 -13.91600 -13.52453 -13.22626 -12.84323 -12.74593 -12.49441 -12.23900 -12.15387 -12.11956 -11.77629 -11.71908 -11.63085 -11.51112 -11.35117 -11.13283 -11.07238 -11.05203 -10.92394 -10.74013 -10.56433 -9.96999 -9.89799 -9.81799 -9.31631 -9.02760 -8.72086 -8.50139 -7.63310 -7.00623 -6.69350 -4.25405 2.79883 2.96029 3.08608 3.11114 3.22756 3.36953 3.53185 3.96007 4.09546 4.47127 4.51343 4.57728 4.64192 4.73349 4.76641 4.87364 5.00039 5.05407 5.09924 5.10533 5.12130 5.20512 5.23231 5.30812 5.37544 5.44029 5.49807 5.54384 5.59045 5.62608 5.68336 5.68844 5.73896 5.78800 6.04692 6.06792 6.23749 6.59350 6.63640 6.73770 6.82072 6.83183 6.98676 7.12228 7.20119 7.48199 7.56835 7.79201 7.80549 8.01419 8.22146 8.46642 8.66495 8.91240 8.99738 10.24722 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.045938 B = 0.001658 C = 0.001645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 609.364710 B =16883.905001 C =17015.168370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.050 3.950 3 N -0.542 5.542 4 C 0.058 3.942 5 C 0.055 3.945 6 N -0.529 5.529 7 C 0.027 3.973 8 C 0.119 3.881 9 H 0.103 0.897 10 O -0.540 6.540 11 C 0.038 3.962 12 O -0.317 6.317 13 C -0.007 4.007 14 C -0.170 4.170 15 C -0.197 4.197 16 C 0.086 3.914 17 C -0.464 4.464 18 H 0.075 0.925 19 C 0.074 3.926 20 N -0.802 5.802 21 Si 0.909 3.091 22 H -0.265 1.265 23 H -0.279 1.279 24 H -0.267 1.267 25 C -0.131 4.131 26 C -0.120 4.120 27 C 0.057 3.943 28 C 0.053 3.947 29 H 0.058 0.942 30 H 0.059 0.941 31 H 0.063 0.937 32 H 0.034 0.966 33 H 0.075 0.925 34 H 0.045 0.955 35 H 0.079 0.921 36 H 0.083 0.917 37 H 0.042 0.958 38 H 0.049 0.951 39 H 0.079 0.921 40 H 0.369 0.631 41 H 0.052 0.948 42 H 0.056 0.944 43 H 0.092 0.908 44 H 0.094 0.906 45 H 0.280 0.720 46 H 0.128 0.872 47 H 0.098 0.902 48 H 0.041 0.959 49 H 0.079 0.921 50 H 0.043 0.957 51 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.199 -16.838 6.849 25.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.077 4.077 3 N -0.268 5.268 4 C -0.070 4.070 5 C -0.073 4.073 6 N -0.253 5.253 7 C -0.101 4.101 8 C 0.059 3.941 9 H 0.121 0.879 10 O -0.343 6.343 11 C -0.040 4.040 12 O -0.232 6.232 13 C -0.051 4.051 14 C -0.189 4.189 15 C -0.217 4.217 16 C 0.084 3.916 17 C -0.494 4.494 18 H 0.093 0.907 19 C -0.143 4.143 20 N -0.428 5.428 21 Si 0.734 3.266 22 H -0.189 1.189 23 H -0.204 1.204 24 H -0.191 1.191 25 C -0.151 4.151 26 C -0.139 4.139 27 C -0.071 4.071 28 C -0.075 4.075 29 H 0.077 0.923 30 H 0.078 0.922 31 H 0.082 0.918 32 H 0.052 0.948 33 H 0.093 0.907 34 H 0.063 0.937 35 H 0.097 0.903 36 H 0.101 0.899 37 H 0.061 0.939 38 H 0.067 0.933 39 H 0.098 0.902 40 H 0.215 0.785 41 H 0.070 0.930 42 H 0.074 0.926 43 H 0.110 0.890 44 H 0.112 0.888 45 H 0.091 0.909 46 H 0.146 0.854 47 H 0.116 0.884 48 H 0.059 0.941 49 H 0.097 0.903 50 H 0.061 0.939 51 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -16.584 -17.513 6.685 25.028 hybrid contribution -0.038 1.403 0.092 1.406 sum -16.621 -16.111 6.777 24.120 Atomic orbital electron populations 1.21934 0.95004 1.01944 1.02489 1.22074 0.95759 0.89029 1.00855 1.62261 1.04246 1.10832 1.49453 1.22145 0.87789 0.96572 1.00509 1.22229 0.98721 0.92802 0.93579 1.62003 1.03645 1.10266 1.49417 1.22724 0.97606 0.89700 1.00105 1.21817 0.94258 0.94859 0.83141 0.87938 1.86642 1.68487 1.57478 1.21742 1.23127 0.85774 0.97134 0.97933 1.85893 1.28534 1.31594 1.77218 1.18645 0.94631 0.84084 1.07693 1.20391 0.99117 0.94062 1.05285 1.20563 0.95999 0.95822 1.09331 1.17602 0.90285 0.93138 0.90555 1.19429 1.17318 1.00896 1.11726 0.90662 1.25870 0.97035 0.97482 0.93872 1.69807 1.30123 1.36865 1.06008 0.86361 0.80154 0.81332 0.78792 1.18927 1.20382 1.19140 1.21039 1.00391 0.90487 1.03163 1.19861 0.93000 0.98132 1.02920 1.22189 0.88168 0.96507 1.00224 1.22256 0.98473 0.92827 0.93985 0.92304 0.92156 0.91810 0.94807 0.90694 0.93686 0.90297 0.89889 0.93939 0.93259 0.90226 0.78495 0.92953 0.92630 0.88982 0.88796 0.90892 0.85430 0.88424 0.94106 0.90270 0.93897 0.89791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.88 9.18 37.16 0.34 -0.54 16 2 C 0.05 0.35 6.00 -3.82 -0.02 0.33 16 3 N -0.54 -4.62 4.86 -234.47 -1.14 -5.76 16 4 C 0.06 0.51 5.58 -3.77 -0.02 0.49 16 5 C 0.05 0.53 5.43 -3.76 -0.02 0.51 16 6 N -0.53 -5.31 4.58 -234.47 -1.07 -6.39 16 7 C 0.03 0.27 4.65 -3.82 -0.02 0.25 16 8 C 0.12 1.53 3.36 -26.73 -0.09 1.44 16 9 H 0.10 1.41 6.82 -51.93 -0.35 1.05 16 10 O -0.54 -7.65 13.26 -40.09 -0.53 -8.19 16 11 C 0.04 0.58 4.36 37.15 0.16 0.74 16 12 O -0.32 -6.56 10.09 -23.60 -0.24 -6.80 16 13 C -0.01 -0.17 6.71 -38.78 -0.26 -0.43 16 14 C -0.17 -3.85 8.96 -39.83 -0.36 -4.20 16 15 C -0.20 -4.87 9.74 -39.25 -0.38 -5.25 16 16 C 0.09 2.33 5.58 -106.80 -0.60 1.73 16 17 C -0.46 -12.37 9.05 -37.83 -0.34 -12.71 16 18 H 0.08 1.92 7.89 -52.49 -0.41 1.51 16 19 C 0.07 1.87 5.18 -17.34 -0.09 1.78 16 20 N -0.80 -20.91 10.85 55.54 0.60 -20.31 16 21 Si 0.91 18.80 29.59 -169.99 -5.03 13.77 16 22 H -0.26 -5.42 7.11 56.52 0.40 -5.02 16 23 H -0.28 -5.62 7.11 56.52 0.40 -5.22 16 24 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 25 C -0.13 -3.47 8.64 -39.25 -0.34 -3.81 16 26 C -0.12 -2.96 9.92 -39.83 -0.40 -3.36 16 27 C 0.06 0.49 5.56 -3.77 -0.02 0.47 16 28 C 0.05 0.43 4.93 -3.77 -0.02 0.41 16 29 H 0.06 0.33 6.26 -51.93 -0.33 0.00 16 30 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.03 0.24 8.08 -51.93 -0.42 -0.18 16 33 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 34 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.08 0.82 6.80 -51.93 -0.35 0.47 16 37 H 0.04 0.41 8.13 -51.93 -0.42 -0.01 16 38 H 0.05 0.47 7.97 -51.93 -0.41 0.06 16 39 H 0.08 0.70 7.82 -51.93 -0.41 0.30 16 40 H 0.37 4.02 9.05 45.56 0.41 4.43 16 41 H 0.05 0.77 7.64 -51.93 -0.40 0.37 16 42 H 0.06 0.81 7.66 -51.93 -0.40 0.41 16 43 H 0.09 1.79 6.27 -52.49 -0.33 1.46 16 44 H 0.09 2.16 8.06 -52.48 -0.42 1.74 16 45 H 0.28 6.68 8.30 -40.82 -0.34 6.34 16 46 H 0.13 3.45 6.11 -52.49 -0.32 3.12 16 47 H 0.10 2.24 8.06 -52.49 -0.42 1.82 16 48 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 49 H 0.08 0.61 7.99 -51.93 -0.42 0.19 16 50 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 51 H 0.08 0.57 5.99 -51.93 -0.31 0.26 16 LS Contribution 399.24 15.07 6.02 6.02 Total: -1.00 -30.09 399.24 -11.67 -41.76 By element: Atomic # 1 Polarization: 15.87 SS G_CDS: -7.81 Total: 8.06 kcal Atomic # 6 Polarization: -19.69 SS G_CDS: -2.47 Total: -22.16 kcal Atomic # 7 Polarization: -30.84 SS G_CDS: -1.61 Total: -32.46 kcal Atomic # 8 Polarization: -14.22 SS G_CDS: -0.77 Total: -14.99 kcal Atomic # 14 Polarization: 18.80 SS G_CDS: -5.03 Total: 13.77 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -30.09 -11.67 -41.76 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000025865813.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.129 kcal (2) G-P(sol) polarization free energy of solvation -30.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.758 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds