Wall clock time and date at job start Tue Mar 31 2020 18:04:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46897 * 109.47314 * 2 1 4 4 C 1.46956 * 111.00131 * 189.99721 * 3 2 1 5 5 C 1.53048 * 109.36746 * 183.18905 * 4 3 2 6 6 N 1.46963 * 109.36060 * 301.60259 * 5 4 3 7 7 C 1.46905 * 110.99923 * 183.18534 * 6 5 4 8 8 C 1.53005 * 109.47124 * 77.33899 * 7 6 5 9 9 H 1.09003 * 109.47098 * 305.33388 * 8 7 6 10 10 O 1.42900 * 109.46804 * 65.32584 * 8 7 6 11 11 C 1.52991 * 109.47303 * 185.32682 * 8 7 6 12 12 O 1.42900 * 109.47090 * 175.00334 * 11 8 7 13 13 C 1.35681 * 117.00018 * 180.02562 * 12 11 8 14 14 C 1.39316 * 119.81556 * 359.71774 * 13 12 11 15 15 C 1.36435 * 120.18342 * 179.76686 * 14 13 12 16 16 C 1.40839 * 119.81049 * 0.51292 * 15 14 13 17 17 C 1.41212 * 120.17688 * 179.72025 * 16 15 14 18 18 H 1.08001 * 120.00101 * 25.18245 * 17 16 15 19 19 C 1.39892 * 119.99835 * 205.17708 * 17 16 15 20 20 N 1.30875 * 119.99961 * 15.44738 * 19 17 16 21 21 Si 1.86801 * 119.99908 * 195.44345 * 19 17 16 22 22 H 1.48497 * 109.47127 * 60.00407 * 21 19 17 23 23 H 1.48501 * 109.46830 * 180.02562 * 21 19 17 24 24 H 1.48497 * 109.47149 * 300.00163 * 21 19 17 25 25 C 1.40829 * 119.64256 * 359.74098 * 16 15 14 26 26 C 1.36448 * 119.81161 * 0.02562 * 25 16 15 27 27 C 1.46956 * 110.88107 * 59.31994 * 6 5 4 28 28 C 1.46955 * 111.00182 * 313.80031 * 3 2 1 29 29 H 1.08997 * 109.47098 * 60.00042 * 1 2 3 30 30 H 1.09000 * 109.46899 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.46805 * 299.99994 * 1 2 3 32 32 H 1.08999 * 109.46805 * 240.00006 * 2 1 3 33 33 H 1.09003 * 109.47204 * 120.00393 * 2 1 3 34 34 H 1.09006 * 109.48610 * 63.22372 * 4 3 2 35 35 H 1.09000 * 109.49076 * 303.16019 * 4 3 2 36 36 H 1.08998 * 109.49334 * 181.63920 * 5 4 3 37 37 H 1.09003 * 109.49064 * 61.56570 * 5 4 3 38 38 H 1.09001 * 109.47116 * 317.34368 * 7 6 5 39 39 H 1.08990 * 109.47453 * 197.34256 * 7 6 5 40 40 H 0.96704 * 114.00209 * 59.99756 * 10 8 7 41 41 H 1.09006 * 109.47217 * 295.00353 * 11 8 7 42 42 H 1.08997 * 109.47367 * 55.00381 * 11 8 7 43 43 H 1.07998 * 119.90596 * 0.02751 * 14 13 12 44 44 H 1.08004 * 120.09746 * 180.25868 * 15 14 13 45 45 H 0.97001 * 120.00086 * 180.02562 * 20 19 17 46 46 H 1.07999 * 120.09291 * 179.97438 * 25 16 15 47 47 H 1.07996 * 119.90854 * 179.97438 * 26 25 16 48 48 H 1.08997 * 109.49127 * 60.64532 * 27 6 5 49 49 H 1.09000 * 109.48785 * 180.70758 * 27 6 5 50 50 H 1.08999 * 109.48938 * 296.77831 * 28 3 2 51 51 H 1.08997 * 109.48697 * 56.83952 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 3.4691 1.4311 -0.2382 5 6 3.9518 2.8809 -0.1516 6 7 3.2320 3.6939 -1.1419 7 6 3.7217 5.0790 -1.1419 8 6 5.0558 5.1483 -1.8879 9 1 5.7544 4.4354 -1.4499 10 8 4.8487 4.8274 -3.2649 11 6 5.6308 6.5615 -1.7744 12 8 6.9292 6.5967 -2.3702 13 6 7.5827 7.7857 -2.3532 14 6 6.9779 8.9003 -1.7764 15 6 7.6301 10.0984 -1.7510 16 6 8.9139 10.2089 -2.3196 17 6 9.5935 11.4466 -2.3028 18 1 9.3611 12.1800 -1.5448 19 6 10.5678 11.7227 -3.2679 20 7 10.6442 10.9892 -4.3491 21 14 11.7599 13.1382 -3.0133 22 1 12.5403 12.9108 -1.7706 23 1 12.6855 13.2202 -4.1717 24 1 11.0011 14.4092 -2.8958 25 6 9.5159 9.0785 -2.9053 26 6 8.8520 7.8865 -2.9182 27 6 1.7827 3.6478 -0.9036 28 6 1.3001 2.1981 -0.9902 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 3.6876 1.0336 -1.2294 35 1 3.9807 0.8319 0.5151 36 1 5.0216 2.9209 -0.3567 37 1 3.7580 3.2697 0.8481 38 1 3.8621 5.4147 -0.1144 39 1 2.9943 5.7215 -1.6378 40 1 4.2363 5.4219 -3.7195 41 1 4.9751 7.2630 -2.2902 42 1 5.7057 6.8399 -0.7232 43 1 5.9917 8.8147 -1.3445 44 1 7.1616 10.9606 -1.2998 45 1 11.3200 11.1804 -5.0182 46 1 10.4999 9.1551 -3.3438 47 1 9.3120 7.0188 -3.3673 48 1 1.5642 4.0452 0.0875 49 1 1.2711 4.2470 -1.6569 50 1 1.4938 1.8094 -1.9899 51 1 0.2303 2.1580 -0.7852 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000025865813.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:04:07 Heat of formation + Delta-G solvation = -75.804688 kcal Electronic energy + Delta-G solvation = -28214.210432 eV Core-core repulsion = 24305.728565 eV Total energy + Delta-G solvation = -3908.481867 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -40.79407 -40.34400 -38.81207 -37.71666 -36.37719 -35.16874 -32.60082 -32.13945 -31.68475 -30.99702 -30.46731 -27.94915 -26.66108 -25.46731 -24.46661 -23.30745 -22.59788 -22.34122 -21.99847 -20.70327 -19.25164 -18.74334 -17.77179 -17.41636 -17.10119 -16.98748 -16.32936 -16.07528 -16.01030 -15.75534 -15.74369 -15.48254 -15.26622 -15.14573 -14.83700 -14.38423 -14.06389 -13.98188 -13.88460 -13.49765 -13.36165 -13.17765 -13.03085 -12.77786 -12.68882 -12.62717 -12.42444 -12.38905 -12.28497 -12.15296 -11.88233 -11.76921 -11.69986 -11.58522 -11.52397 -11.19715 -10.93200 -10.87322 -9.56019 -9.40475 -9.22973 -8.90780 -8.57307 -6.23310 0.95505 1.03092 1.40137 1.51283 1.54858 2.23273 2.33545 2.74231 2.90800 3.00676 3.53391 3.70635 3.82223 3.84629 3.98502 4.04277 4.05617 4.17945 4.23828 4.25902 4.29114 4.36227 4.40063 4.45745 4.45782 4.51137 4.53986 4.59604 4.63839 4.79690 4.86359 4.87059 4.89883 4.98394 5.02692 5.07702 5.08164 5.13426 5.22054 5.29168 5.29784 5.59397 5.64861 5.88499 5.91556 5.96339 6.06101 6.13667 6.15330 6.27065 6.57311 6.80752 6.90024 6.95782 7.10581 8.38727 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.045938 B = 0.001658 C = 0.001645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 609.364710 B =16883.905001 C =17015.168370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.048 3.952 3 N -0.549 5.549 4 C 0.061 3.939 5 C 0.055 3.945 6 N -0.541 5.541 7 C 0.037 3.963 8 C 0.129 3.871 9 H 0.090 0.910 10 O -0.560 6.560 11 C 0.030 3.970 12 O -0.331 6.331 13 C 0.002 3.998 14 C -0.166 4.166 15 C -0.206 4.206 16 C 0.052 3.948 17 C -0.499 4.499 18 H 0.077 0.923 19 C 0.032 3.968 20 N -0.834 5.834 21 Si 0.983 3.017 22 H -0.261 1.261 23 H -0.270 1.270 24 H -0.259 1.259 25 C -0.151 4.151 26 C -0.136 4.136 27 C 0.058 3.942 28 C 0.055 3.945 29 H 0.059 0.941 30 H 0.071 0.929 31 H 0.061 0.939 32 H 0.029 0.971 33 H 0.079 0.921 34 H 0.031 0.969 35 H 0.088 0.912 36 H 0.075 0.925 37 H 0.042 0.958 38 H 0.057 0.943 39 H 0.096 0.904 40 H 0.382 0.618 41 H 0.066 0.934 42 H 0.069 0.931 43 H 0.130 0.870 44 H 0.107 0.893 45 H 0.287 0.713 46 H 0.111 0.889 47 H 0.105 0.895 48 H 0.041 0.959 49 H 0.091 0.909 50 H 0.031 0.969 51 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.940 -16.820 7.745 26.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.079 4.079 3 N -0.275 5.275 4 C -0.067 4.067 5 C -0.073 4.073 6 N -0.266 5.266 7 C -0.091 4.091 8 C 0.069 3.931 9 H 0.108 0.892 10 O -0.367 6.367 11 C -0.046 4.046 12 O -0.247 6.247 13 C -0.042 4.042 14 C -0.185 4.185 15 C -0.225 4.225 16 C 0.050 3.950 17 C -0.529 4.529 18 H 0.095 0.905 19 C -0.182 4.182 20 N -0.462 5.462 21 Si 0.804 3.196 22 H -0.185 1.185 23 H -0.194 1.194 24 H -0.184 1.184 25 C -0.170 4.170 26 C -0.155 4.155 27 C -0.069 4.069 28 C -0.073 4.073 29 H 0.078 0.922 30 H 0.090 0.910 31 H 0.080 0.920 32 H 0.047 0.953 33 H 0.097 0.903 34 H 0.049 0.951 35 H 0.106 0.894 36 H 0.094 0.906 37 H 0.061 0.939 38 H 0.075 0.925 39 H 0.115 0.885 40 H 0.231 0.769 41 H 0.084 0.916 42 H 0.087 0.913 43 H 0.148 0.852 44 H 0.125 0.875 45 H 0.097 0.903 46 H 0.129 0.871 47 H 0.123 0.877 48 H 0.059 0.941 49 H 0.109 0.891 50 H 0.049 0.951 51 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -18.360 -17.514 7.585 26.483 hybrid contribution 0.363 1.230 -0.180 1.295 sum -17.998 -16.284 7.405 25.375 Atomic orbital electron populations 1.21895 0.93870 1.02712 1.02398 1.22138 0.96707 0.88208 1.00836 1.62304 1.03934 1.11760 1.49477 1.22105 0.88410 0.96217 1.00015 1.22209 0.98363 0.93231 0.93466 1.61968 1.04580 1.10259 1.49778 1.22593 0.96214 0.90156 1.00180 1.21738 0.95484 0.92865 0.83040 0.89242 1.86609 1.69198 1.58269 1.22575 1.23506 0.83484 0.99225 0.98426 1.85886 1.30947 1.30216 1.77669 1.18711 0.94187 0.85218 1.06100 1.20701 1.00429 0.92920 1.04403 1.20818 0.95474 0.97198 1.09037 1.17970 0.91629 0.93576 0.91798 1.19701 1.19165 1.01286 1.12736 0.90520 1.26745 0.98171 1.00215 0.93040 1.69875 1.30914 1.38584 1.06781 0.85233 0.77644 0.77802 0.78889 1.18549 1.19394 1.18362 1.20949 1.00244 0.91385 1.04445 1.20021 0.94106 0.97882 1.03500 1.22236 0.87189 0.96949 1.00567 1.22270 0.99276 0.92511 0.93264 0.92213 0.91036 0.91968 0.95256 0.90278 0.95104 0.89380 0.90628 0.93944 0.92468 0.88525 0.76920 0.91597 0.91329 0.85239 0.87517 0.90272 0.87071 0.87676 0.94115 0.89119 0.95104 0.88309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.44 9.18 71.98 0.66 -0.78 16 2 C 0.05 0.61 6.00 86.30 0.52 1.13 16 3 N -0.55 -8.62 4.86 -895.74 -4.35 -12.97 16 4 C 0.06 1.03 5.58 86.31 0.48 1.51 16 5 C 0.06 1.01 5.43 86.31 0.47 1.48 16 6 N -0.54 -9.94 4.58 -895.72 -4.11 -14.05 16 7 C 0.04 0.65 4.65 86.30 0.40 1.05 16 8 C 0.13 3.08 3.36 30.59 0.10 3.19 16 9 H 0.09 2.38 6.82 -2.39 -0.02 2.37 16 10 O -0.56 -15.08 13.26 -144.33 -1.91 -16.99 16 11 C 0.03 0.85 4.36 71.98 0.31 1.16 16 12 O -0.33 -13.30 10.09 -85.34 -0.86 -14.16 16 13 C 0.00 0.08 6.71 22.79 0.15 0.23 16 14 C -0.17 -7.25 8.96 22.11 0.20 -7.06 16 15 C -0.21 -10.08 9.74 22.49 0.22 -9.86 16 16 C 0.05 2.88 5.58 -21.28 -0.12 2.76 16 17 C -0.50 -27.18 9.05 23.40 0.21 -26.97 16 18 H 0.08 3.98 7.89 -2.91 -0.02 3.96 16 19 C 0.03 1.62 5.18 85.24 0.44 2.06 16 20 N -0.83 -44.59 10.85 21.82 0.24 -44.35 16 21 Si 0.98 38.67 29.59 68.60 2.03 40.70 16 22 H -0.26 -10.03 7.11 99.48 0.71 -9.32 16 23 H -0.27 -10.07 7.11 99.48 0.71 -9.36 16 24 H -0.26 -9.81 7.11 99.48 0.71 -9.11 16 25 C -0.15 -8.23 8.64 22.49 0.19 -8.03 16 26 C -0.14 -6.83 9.92 22.11 0.22 -6.61 16 27 C 0.06 0.88 5.56 86.31 0.48 1.36 16 28 C 0.05 0.80 4.93 86.31 0.43 1.22 16 29 H 0.06 0.56 6.26 -2.39 -0.01 0.54 16 30 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 31 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 32 H 0.03 0.40 8.08 -2.39 -0.02 0.38 16 33 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 34 H 0.03 0.60 8.14 -2.38 -0.02 0.58 16 35 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 36 H 0.08 1.46 6.80 -2.39 -0.02 1.44 16 37 H 0.04 0.77 8.13 -2.39 -0.02 0.75 16 38 H 0.06 0.93 7.97 -2.39 -0.02 0.92 16 39 H 0.10 1.38 7.82 -2.39 -0.02 1.36 16 40 H 0.38 7.61 9.05 -74.05 -0.67 6.94 16 41 H 0.07 1.72 7.64 -2.38 -0.02 1.70 16 42 H 0.07 1.79 7.66 -2.39 -0.02 1.78 16 43 H 0.13 4.60 6.27 -2.91 -0.02 4.58 16 44 H 0.11 4.83 8.06 -2.91 -0.02 4.80 16 45 H 0.29 13.92 8.30 -92.71 -0.77 13.15 16 46 H 0.11 6.31 6.11 -2.91 -0.02 6.29 16 47 H 0.11 4.95 8.06 -2.91 -0.02 4.92 16 48 H 0.04 0.63 8.14 -2.39 -0.02 0.61 16 49 H 0.09 1.15 7.99 -2.39 -0.02 1.13 16 50 H 0.03 0.53 8.14 -2.39 -0.02 0.51 16 51 H 0.10 1.14 5.99 -2.39 -0.01 1.12 16 Total: -1.00 -65.33 399.24 -3.35 -68.68 By element: Atomic # 1 Polarization: 35.06 SS G_CDS: 0.25 Total: 35.31 kcal Atomic # 6 Polarization: -47.54 SS G_CDS: 5.37 Total: -42.16 kcal Atomic # 7 Polarization: -63.16 SS G_CDS: -8.22 Total: -71.38 kcal Atomic # 8 Polarization: -28.37 SS G_CDS: -2.77 Total: -31.15 kcal Atomic # 14 Polarization: 38.67 SS G_CDS: 2.03 Total: 40.70 kcal Total: -65.33 -3.35 -68.68 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000025865813.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.124 kcal (2) G-P(sol) polarization free energy of solvation -65.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.680 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds