Wall clock time and date at job start Tue Mar 31 2020 19:25:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42900 * 109.47573 * 2 1 4 4 C 1.35707 * 117.00081 * 179.97438 * 3 2 1 5 5 C 1.38993 * 119.91178 * 359.73109 * 4 3 2 6 6 C 1.37710 * 120.08518 * 179.72227 * 5 4 3 7 7 C 1.39727 * 119.90919 * 0.56726 * 6 5 4 8 8 C 1.47606 * 120.08686 * 179.68491 * 7 6 5 9 9 O 1.21586 * 120.00374 * 150.29685 * 8 7 6 10 10 N 1.34775 * 119.99886 * 330.29488 * 8 7 6 11 11 C 1.46505 * 119.99958 * 6.13266 * 10 8 7 12 12 C 1.50703 * 109.46870 * 98.09754 * 11 10 8 13 13 H 1.07995 * 120.00343 * 0.02562 * 12 11 10 14 14 C 1.37879 * 119.99693 * 180.02562 * 12 11 10 15 15 N 1.31517 * 120.00055 * 359.97438 * 14 12 11 16 16 Si 1.86795 * 119.99866 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.47233 * 0.02562 * 16 14 12 18 18 H 1.48499 * 109.47232 * 119.99911 * 16 14 12 19 19 H 1.48500 * 109.47469 * 240.00027 * 16 14 12 20 20 C 1.46501 * 120.00251 * 186.13319 * 10 8 7 21 21 C 1.53002 * 109.47072 * 90.00103 * 20 10 8 22 22 C 1.52994 * 109.47014 * 180.02562 * 21 20 10 23 23 N 1.46900 * 109.47084 * 179.97438 * 22 21 20 24 24 C 1.46902 * 110.99708 * 66.04852 * 23 22 21 25 25 C 1.46905 * 111.00194 * 189.99823 * 23 22 21 26 26 C 1.39734 * 119.82991 * 359.70379 * 7 6 5 27 27 C 1.37708 * 119.90766 * 359.97438 * 26 7 6 28 28 H 1.08998 * 109.46873 * 300.00546 * 1 2 3 29 29 H 1.09006 * 109.46204 * 60.00237 * 1 2 3 30 30 H 1.08994 * 109.47408 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47348 * 239.99249 * 2 1 3 32 32 H 1.09007 * 109.46761 * 120.00277 * 2 1 3 33 33 H 1.08001 * 119.95662 * 359.97438 * 5 4 3 34 34 H 1.08005 * 120.04141 * 180.27591 * 6 5 4 35 35 H 1.09001 * 109.47273 * 218.09881 * 11 10 8 36 36 H 1.08998 * 109.46973 * 338.10177 * 11 10 8 37 37 H 0.97000 * 119.99445 * 179.97438 * 15 14 12 38 38 H 1.09000 * 109.46939 * 209.99995 * 20 10 8 39 39 H 1.08996 * 109.46941 * 329.99909 * 20 10 8 40 40 H 1.09007 * 109.46872 * 300.00038 * 21 20 10 41 41 H 1.09004 * 109.47148 * 60.00117 * 21 20 10 42 42 H 1.09002 * 109.47473 * 299.99867 * 22 21 20 43 43 H 1.09004 * 109.47291 * 59.99931 * 22 21 20 44 44 H 1.08997 * 109.47204 * 59.99872 * 24 23 22 45 45 H 1.09001 * 109.46805 * 179.97438 * 24 23 22 46 46 H 1.09000 * 109.47194 * 299.99609 * 24 23 22 47 47 H 1.08999 * 109.46854 * 60.00023 * 25 23 22 48 48 H 1.08997 * 109.46971 * 180.02562 * 25 23 22 49 49 H 1.08998 * 109.46865 * 300.00436 * 25 23 22 50 50 H 1.07999 * 120.05139 * 179.97438 * 26 7 6 51 51 H 1.07994 * 119.95642 * 179.97438 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3518 1.5250 0.0005 5 6 4.1967 0.4213 0.0067 6 6 5.5625 0.5975 0.0015 7 6 6.0986 1.8879 0.0020 8 6 7.5619 2.0812 0.0034 9 8 8.0454 3.0676 -0.5178 10 7 8.3622 1.1645 0.5827 11 6 7.7944 -0.0867 1.0913 12 6 7.9943 -1.1795 0.0731 13 1 8.4945 -0.9639 -0.8594 14 6 7.5384 -2.4547 0.3320 15 7 6.9297 -2.7175 1.4678 16 14 7.7868 -3.8095 -0.9297 17 1 8.4951 -3.2598 -2.1135 18 1 8.5970 -4.9008 -0.3314 19 1 6.4663 -4.3454 -1.3472 20 6 9.7998 1.4189 0.7037 21 6 10.0824 2.1283 2.0295 22 6 11.5837 2.3947 2.1556 23 7 11.8549 3.0763 3.4283 24 6 11.5586 2.1991 4.5688 25 6 13.2412 3.5593 3.4819 26 6 5.2458 2.9948 0.0015 27 6 3.8811 2.8102 0.0000 28 1 -0.3633 0.5139 0.8899 29 1 -0.3632 0.5139 -0.8901 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5139 0.8900 33 1 3.7816 -0.5757 0.0115 34 1 6.2184 -0.2606 0.0018 35 1 8.2932 -0.3605 2.0210 36 1 6.7286 0.0469 1.2765 37 1 6.6087 -3.6146 1.6498 38 1 10.3399 0.4726 0.6756 39 1 10.1280 2.0492 -0.1228 40 1 9.5422 3.0747 2.0576 41 1 9.7541 1.4980 2.8561 42 1 12.1242 1.4485 2.1274 43 1 11.9115 3.0252 1.3291 44 1 12.1805 1.3058 4.5113 45 1 11.7685 2.7283 5.4983 46 1 10.5073 1.9123 4.5431 47 1 13.4132 4.2612 2.6659 48 1 13.4151 4.0594 4.4347 49 1 13.9240 2.7152 3.3851 50 1 5.6562 3.9937 0.0023 51 1 3.2213 3.6652 0.0000 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000064381249.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:25:14 Heat of formation + Delta-G solvation = -27.276292 kcal Electronic energy + Delta-G solvation = -29333.482666 eV Core-core repulsion = 25427.105149 eV Total energy + Delta-G solvation = -3906.377517 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.09864 -39.07492 -37.61571 -36.63872 -35.34947 -33.18022 -32.06272 -31.47715 -30.42335 -29.25581 -27.63688 -27.51965 -25.93292 -23.97842 -23.32751 -22.86445 -21.95114 -21.19838 -20.57451 -18.84990 -17.88236 -16.81352 -16.51461 -15.97360 -15.97186 -15.47037 -15.37707 -14.86618 -14.64811 -14.63513 -14.14618 -14.10471 -13.83666 -13.34174 -13.20717 -13.13284 -13.03292 -12.59537 -12.39674 -12.38438 -12.16642 -12.03666 -11.75729 -11.64742 -11.54443 -11.52717 -11.31333 -11.19715 -11.10908 -10.98703 -10.84237 -10.51652 -10.35347 -10.11018 -9.85664 -9.67763 -9.04255 -8.77987 -8.38533 -8.32395 -7.82672 -7.64547 -6.34865 -4.44466 1.54398 1.88919 3.11841 3.21654 3.26444 3.36069 3.51702 3.81866 4.11914 4.20401 4.42857 4.94142 4.94643 4.98629 5.10387 5.17296 5.25320 5.26333 5.31216 5.37170 5.42511 5.45225 5.52396 5.58248 5.67462 5.73022 5.75828 5.79712 5.80124 5.84576 5.91896 5.93589 6.02653 6.03579 6.12332 6.20492 6.47945 6.53432 6.63876 6.69347 6.73273 6.96374 7.05209 7.05879 7.08711 7.14668 7.24945 7.50789 7.61931 7.71577 7.88221 8.32394 8.67440 9.02059 9.24452 10.69082 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.009142 B = 0.003584 C = 0.002839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3062.146354 B = 7810.981574 C = 9860.229424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.052 3.948 3 O -0.320 6.320 4 C 0.142 3.858 5 C -0.222 4.222 6 C -0.054 4.054 7 C -0.174 4.174 8 C 0.562 3.438 9 O -0.572 6.572 10 N -0.589 5.589 11 C 0.208 3.792 12 C -0.543 4.543 13 H 0.067 0.933 14 C 0.068 3.932 15 N -0.881 5.881 16 Si 0.895 3.105 17 H -0.270 1.270 18 H -0.281 1.281 19 H -0.280 1.280 20 C 0.123 3.877 21 C -0.129 4.129 22 C 0.059 3.941 23 N -0.548 5.548 24 C 0.021 3.979 25 C 0.025 3.975 26 C -0.031 4.031 27 C -0.179 4.179 28 H 0.064 0.936 29 H 0.063 0.937 30 H 0.076 0.924 31 H 0.063 0.937 32 H 0.065 0.935 33 H 0.128 0.872 34 H 0.205 0.795 35 H 0.033 0.967 36 H 0.068 0.932 37 H 0.268 0.732 38 H 0.078 0.922 39 H 0.073 0.927 40 H 0.070 0.930 41 H 0.064 0.936 42 H 0.035 0.965 43 H 0.074 0.926 44 H 0.025 0.975 45 H 0.063 0.937 46 H 0.074 0.926 47 H 0.067 0.933 48 H 0.065 0.935 49 H 0.023 0.977 50 H 0.131 0.869 51 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.923 5.154 2.433 6.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.024 4.024 3 O -0.234 6.234 4 C 0.097 3.903 5 C -0.241 4.241 6 C -0.071 4.071 7 C -0.177 4.177 8 C 0.352 3.648 9 O -0.454 6.454 10 N -0.318 5.318 11 C 0.089 3.911 12 C -0.581 4.581 13 H 0.085 0.915 14 C -0.136 4.136 15 N -0.518 5.518 16 Si 0.722 3.278 17 H -0.194 1.194 18 H -0.207 1.207 19 H -0.206 1.206 20 C -0.001 4.001 21 C -0.168 4.168 22 C -0.069 4.069 23 N -0.272 5.272 24 C -0.127 4.127 25 C -0.123 4.123 26 C -0.050 4.050 27 C -0.198 4.198 28 H 0.083 0.917 29 H 0.083 0.917 30 H 0.095 0.905 31 H 0.081 0.919 32 H 0.083 0.917 33 H 0.146 0.854 34 H 0.221 0.779 35 H 0.051 0.949 36 H 0.085 0.915 37 H 0.078 0.922 38 H 0.096 0.904 39 H 0.092 0.908 40 H 0.088 0.912 41 H 0.083 0.917 42 H 0.053 0.947 43 H 0.093 0.907 44 H 0.043 0.957 45 H 0.082 0.918 46 H 0.093 0.907 47 H 0.086 0.914 48 H 0.083 0.917 49 H 0.041 0.959 50 H 0.149 0.851 51 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -2.210 6.026 2.325 6.827 hybrid contribution 0.682 -1.950 -0.509 2.127 sum -1.528 4.077 1.816 4.717 Atomic orbital electron populations 1.21763 0.93076 1.02659 1.03196 1.22784 0.95429 0.82186 1.01958 1.85955 1.19660 1.29255 1.88497 1.19308 0.81830 0.94454 0.94725 1.21292 0.94542 0.97672 1.10585 1.23342 0.95896 0.99865 0.88031 1.19859 0.93383 0.94189 1.10239 1.18190 0.86427 0.82310 0.77901 1.90664 1.76636 1.30963 1.47131 1.47996 1.06948 1.19409 1.57449 1.20289 0.96601 0.79207 0.95004 1.21531 1.39019 0.93669 1.03930 0.91514 1.25002 0.94520 0.98522 0.95599 1.69950 1.37288 1.21760 1.22761 0.86467 0.78295 0.81553 0.81491 1.19396 1.20666 1.20592 1.21195 0.82026 1.00302 0.96623 1.21944 0.94778 1.01426 0.98604 1.22074 0.96840 0.96842 0.91153 1.61978 1.22954 1.39311 1.02979 1.22439 1.02070 0.94845 0.93350 1.22364 0.88208 0.99317 1.02432 1.20921 0.91598 0.98472 0.93970 1.20150 0.94784 0.94418 1.10462 0.91679 0.91748 0.90515 0.91894 0.91688 0.85426 0.77893 0.94942 0.91541 0.92243 0.90409 0.90819 0.91172 0.91693 0.94669 0.90749 0.95672 0.91792 0.90737 0.91447 0.91651 0.95867 0.85131 0.85515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.41 10.28 37.16 0.38 -1.02 16 2 C 0.05 0.64 5.45 37.16 0.20 0.84 16 3 O -0.32 -4.92 10.12 -18.83 -0.19 -5.11 16 4 C 0.14 2.45 6.70 -39.02 -0.26 2.19 16 5 C -0.22 -4.11 9.01 -39.49 -0.36 -4.46 16 6 C -0.05 -1.13 7.47 -39.22 -0.29 -1.42 16 7 C -0.17 -3.58 5.58 -104.96 -0.59 -4.17 16 8 C 0.56 12.40 7.45 -12.44 -0.09 12.31 16 9 O -0.57 -13.47 16.25 5.29 0.09 -13.39 16 10 N -0.59 -12.54 2.46 -176.26 -0.43 -12.97 16 11 C 0.21 4.79 4.64 -5.19 -0.02 4.76 16 12 C -0.54 -13.31 7.47 -34.44 -0.26 -13.56 16 13 H 0.07 1.69 7.81 -52.49 -0.41 1.28 16 14 C 0.07 1.68 5.32 -17.82 -0.09 1.59 16 15 N -0.88 -22.44 13.29 55.43 0.74 -21.71 16 16 Si 0.90 19.40 29.54 -169.99 -5.02 14.38 16 17 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 18 H -0.28 -6.10 7.11 56.52 0.40 -5.69 16 19 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 20 C 0.12 2.27 5.46 -4.04 -0.02 2.25 16 21 C -0.13 -2.10 5.46 -26.73 -0.15 -2.25 16 22 C 0.06 0.82 4.96 -3.83 -0.02 0.80 16 23 N -0.55 -7.24 5.02 -251.26 -1.26 -8.50 16 24 C 0.02 0.26 9.32 60.07 0.56 0.82 16 25 C 0.03 0.27 9.57 60.07 0.57 0.84 16 26 C -0.03 -0.56 9.59 -39.22 -0.38 -0.93 16 27 C -0.18 -2.99 9.97 -39.49 -0.39 -3.38 16 28 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 29 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 31 H 0.06 0.76 7.66 -51.93 -0.40 0.36 16 32 H 0.06 0.80 7.64 -51.92 -0.40 0.41 16 33 H 0.13 2.19 6.28 -52.49 -0.33 1.86 16 34 H 0.21 4.68 2.99 -52.48 -0.16 4.52 16 35 H 0.03 0.79 8.13 -51.93 -0.42 0.36 16 36 H 0.07 1.58 4.08 -51.97 -0.21 1.37 16 37 H 0.27 6.49 8.31 -40.82 -0.34 6.15 16 38 H 0.08 1.42 8.07 -51.93 -0.42 1.00 16 39 H 0.07 1.38 7.35 -51.93 -0.38 1.00 16 40 H 0.07 1.26 8.14 -51.92 -0.42 0.84 16 41 H 0.06 1.09 6.55 -51.93 -0.34 0.75 16 42 H 0.04 0.48 8.12 -51.93 -0.42 0.05 16 43 H 0.07 1.00 8.06 -51.93 -0.42 0.58 16 44 H 0.02 0.29 8.14 -51.93 -0.42 -0.13 16 45 H 0.06 0.67 8.12 -51.93 -0.42 0.25 16 46 H 0.07 0.97 6.47 -51.93 -0.34 0.63 16 47 H 0.07 0.67 8.12 -51.93 -0.42 0.25 16 48 H 0.06 0.61 8.12 -51.93 -0.42 0.19 16 49 H 0.02 0.23 8.14 -51.93 -0.42 -0.19 16 50 H 0.13 2.20 7.92 -52.49 -0.42 1.79 16 51 H 0.13 1.79 8.06 -52.49 -0.42 1.37 16 LS Contribution 408.42 15.07 6.15 6.15 Total: -1.00 -28.01 408.42 -9.55 -37.56 By element: Atomic # 1 Polarization: 16.81 SS G_CDS: -8.42 Total: 8.40 kcal Atomic # 6 Polarization: -3.60 SS G_CDS: -1.20 Total: -4.80 kcal Atomic # 7 Polarization: -42.22 SS G_CDS: -0.96 Total: -43.18 kcal Atomic # 8 Polarization: -18.39 SS G_CDS: -0.10 Total: -18.50 kcal Atomic # 14 Polarization: 19.40 SS G_CDS: -5.02 Total: 14.38 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -28.01 -9.55 -37.56 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000064381249.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.280 kcal (2) G-P(sol) polarization free energy of solvation -28.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.556 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds