Wall clock time and date at job start Tue Mar 31 2020 19:25:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42900 * 109.47573 * 2 1 4 4 C 1.35707 * 117.00081 * 179.97438 * 3 2 1 5 5 C 1.38993 * 119.91178 * 359.73109 * 4 3 2 6 6 C 1.37710 * 120.08518 * 179.72227 * 5 4 3 7 7 C 1.39727 * 119.90919 * 0.56726 * 6 5 4 8 8 C 1.47606 * 120.08686 * 179.68491 * 7 6 5 9 9 O 1.21586 * 120.00374 * 150.29685 * 8 7 6 10 10 N 1.34775 * 119.99886 * 330.29488 * 8 7 6 11 11 C 1.46505 * 119.99958 * 6.13266 * 10 8 7 12 12 C 1.50703 * 109.46870 * 98.09754 * 11 10 8 13 13 H 1.07995 * 120.00343 * 0.02562 * 12 11 10 14 14 C 1.37879 * 119.99693 * 180.02562 * 12 11 10 15 15 N 1.31517 * 120.00055 * 359.97438 * 14 12 11 16 16 Si 1.86795 * 119.99866 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.47233 * 0.02562 * 16 14 12 18 18 H 1.48499 * 109.47232 * 119.99911 * 16 14 12 19 19 H 1.48500 * 109.47469 * 240.00027 * 16 14 12 20 20 C 1.46501 * 120.00251 * 186.13319 * 10 8 7 21 21 C 1.53002 * 109.47072 * 90.00103 * 20 10 8 22 22 C 1.52994 * 109.47014 * 180.02562 * 21 20 10 23 23 N 1.46900 * 109.47084 * 179.97438 * 22 21 20 24 24 C 1.46902 * 110.99708 * 66.04852 * 23 22 21 25 25 C 1.46905 * 111.00194 * 189.99823 * 23 22 21 26 26 C 1.39734 * 119.82991 * 359.70379 * 7 6 5 27 27 C 1.37708 * 119.90766 * 359.97438 * 26 7 6 28 28 H 1.08998 * 109.46873 * 300.00546 * 1 2 3 29 29 H 1.09006 * 109.46204 * 60.00237 * 1 2 3 30 30 H 1.08994 * 109.47408 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47348 * 239.99249 * 2 1 3 32 32 H 1.09007 * 109.46761 * 120.00277 * 2 1 3 33 33 H 1.08001 * 119.95662 * 359.97438 * 5 4 3 34 34 H 1.08005 * 120.04141 * 180.27591 * 6 5 4 35 35 H 1.09001 * 109.47273 * 218.09881 * 11 10 8 36 36 H 1.08998 * 109.46973 * 338.10177 * 11 10 8 37 37 H 0.97000 * 119.99445 * 179.97438 * 15 14 12 38 38 H 1.09000 * 109.46939 * 209.99995 * 20 10 8 39 39 H 1.08996 * 109.46941 * 329.99909 * 20 10 8 40 40 H 1.09007 * 109.46872 * 300.00038 * 21 20 10 41 41 H 1.09004 * 109.47148 * 60.00117 * 21 20 10 42 42 H 1.09002 * 109.47473 * 299.99867 * 22 21 20 43 43 H 1.09004 * 109.47291 * 59.99931 * 22 21 20 44 44 H 1.08997 * 109.47204 * 59.99872 * 24 23 22 45 45 H 1.09001 * 109.46805 * 179.97438 * 24 23 22 46 46 H 1.09000 * 109.47194 * 299.99609 * 24 23 22 47 47 H 1.08999 * 109.46854 * 60.00023 * 25 23 22 48 48 H 1.08997 * 109.46971 * 180.02562 * 25 23 22 49 49 H 1.08998 * 109.46865 * 300.00436 * 25 23 22 50 50 H 1.07999 * 120.05139 * 179.97438 * 26 7 6 51 51 H 1.07994 * 119.95642 * 179.97438 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3518 1.5250 0.0005 5 6 4.1967 0.4213 0.0067 6 6 5.5625 0.5975 0.0015 7 6 6.0986 1.8879 0.0020 8 6 7.5619 2.0812 0.0034 9 8 8.0454 3.0676 -0.5178 10 7 8.3622 1.1645 0.5827 11 6 7.7944 -0.0867 1.0913 12 6 7.9943 -1.1795 0.0731 13 1 8.4945 -0.9639 -0.8594 14 6 7.5384 -2.4547 0.3320 15 7 6.9297 -2.7175 1.4678 16 14 7.7868 -3.8095 -0.9297 17 1 8.4951 -3.2598 -2.1135 18 1 8.5970 -4.9008 -0.3314 19 1 6.4663 -4.3454 -1.3472 20 6 9.7998 1.4189 0.7037 21 6 10.0824 2.1283 2.0295 22 6 11.5837 2.3947 2.1556 23 7 11.8549 3.0763 3.4283 24 6 11.5586 2.1991 4.5688 25 6 13.2412 3.5593 3.4819 26 6 5.2458 2.9948 0.0015 27 6 3.8811 2.8102 0.0000 28 1 -0.3633 0.5139 0.8899 29 1 -0.3632 0.5139 -0.8901 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5139 0.8900 33 1 3.7816 -0.5757 0.0115 34 1 6.2184 -0.2606 0.0018 35 1 8.2932 -0.3605 2.0210 36 1 6.7286 0.0469 1.2765 37 1 6.6087 -3.6146 1.6498 38 1 10.3399 0.4726 0.6756 39 1 10.1280 2.0492 -0.1228 40 1 9.5422 3.0747 2.0576 41 1 9.7541 1.4980 2.8561 42 1 12.1242 1.4485 2.1274 43 1 11.9115 3.0252 1.3291 44 1 12.1805 1.3058 4.5113 45 1 11.7685 2.7283 5.4983 46 1 10.5073 1.9123 4.5431 47 1 13.4132 4.2612 2.6659 48 1 13.4151 4.0594 4.4347 49 1 13.9240 2.7152 3.3851 50 1 5.6562 3.9937 0.0023 51 1 3.2213 3.6652 0.0000 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000064381249.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:25:13 Heat of formation + Delta-G solvation = -42.256995 kcal Electronic energy + Delta-G solvation = -29334.132278 eV Core-core repulsion = 25427.105149 eV Total energy + Delta-G solvation = -3907.027129 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.60067 -40.53461 -38.72687 -38.04512 -37.06391 -34.90386 -33.45060 -32.63129 -31.86503 -30.60514 -29.39074 -28.49308 -27.26233 -25.19347 -25.06051 -24.17084 -23.37362 -22.44267 -21.79010 -20.46481 -19.19110 -18.65399 -18.18016 -17.55071 -17.06810 -16.68677 -16.53268 -16.40998 -16.16492 -16.02157 -15.62805 -15.39574 -15.18532 -14.74506 -14.60905 -14.39756 -14.31179 -14.19835 -13.68937 -13.41391 -13.31510 -13.24391 -13.10756 -12.95016 -12.84743 -12.72235 -12.67238 -12.59971 -12.43916 -12.38584 -12.27717 -12.06200 -11.72547 -11.63596 -11.51199 -11.30105 -10.80440 -10.59560 -9.90128 -9.52163 -9.32717 -9.14320 -8.24998 -6.40852 0.04476 0.43032 1.38691 1.43637 1.53310 1.88160 2.18591 2.24904 2.41013 2.88012 3.03343 3.04032 3.73494 3.90158 3.92185 3.94148 4.05328 4.12404 4.19873 4.22930 4.34021 4.39204 4.41166 4.44441 4.50319 4.51407 4.60685 4.63131 4.66500 4.74275 4.79572 4.87638 4.89586 4.95573 4.99934 5.00848 5.10278 5.13405 5.19356 5.21529 5.25571 5.28374 5.48008 5.55512 5.63891 5.75329 5.82960 5.98057 6.03745 6.11382 6.39342 6.52906 6.77073 7.24195 7.35692 8.78898 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.009142 B = 0.003584 C = 0.002839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3062.146354 B = 7810.981574 C = 9860.229424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.040 3.960 3 O -0.319 6.319 4 C 0.151 3.849 5 C -0.227 4.227 6 C -0.070 4.070 7 C -0.198 4.198 8 C 0.556 3.444 9 O -0.593 6.593 10 N -0.592 5.592 11 C 0.224 3.776 12 C -0.549 4.549 13 H 0.053 0.947 14 C 0.035 3.965 15 N -0.905 5.905 16 Si 0.950 3.050 17 H -0.274 1.274 18 H -0.277 1.277 19 H -0.273 1.273 20 C 0.121 3.879 21 C -0.112 4.112 22 C 0.067 3.933 23 N -0.564 5.564 24 C 0.022 3.978 25 C 0.025 3.975 26 C -0.029 4.029 27 C -0.170 4.170 28 H 0.067 0.933 29 H 0.068 0.932 30 H 0.098 0.902 31 H 0.066 0.934 32 H 0.063 0.937 33 H 0.136 0.864 34 H 0.181 0.819 35 H 0.014 0.986 36 H 0.063 0.937 37 H 0.272 0.728 38 H 0.077 0.923 39 H 0.071 0.929 40 H 0.052 0.948 41 H 0.056 0.944 42 H 0.040 0.960 43 H 0.080 0.920 44 H 0.028 0.972 45 H 0.081 0.919 46 H 0.058 0.942 47 H 0.072 0.928 48 H 0.079 0.921 49 H 0.029 0.971 50 H 0.142 0.858 51 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.863 5.341 2.404 6.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.035 4.035 3 O -0.233 6.233 4 C 0.104 3.896 5 C -0.246 4.246 6 C -0.088 4.088 7 C -0.201 4.201 8 C 0.347 3.653 9 O -0.478 6.478 10 N -0.320 5.320 11 C 0.104 3.896 12 C -0.587 4.587 13 H 0.071 0.929 14 C -0.168 4.168 15 N -0.542 5.542 16 Si 0.776 3.224 17 H -0.198 1.198 18 H -0.203 1.203 19 H -0.198 1.198 20 C -0.003 4.003 21 C -0.151 4.151 22 C -0.062 4.062 23 N -0.289 5.289 24 C -0.126 4.126 25 C -0.123 4.123 26 C -0.048 4.048 27 C -0.189 4.189 28 H 0.086 0.914 29 H 0.087 0.913 30 H 0.116 0.884 31 H 0.084 0.916 32 H 0.082 0.918 33 H 0.154 0.846 34 H 0.198 0.802 35 H 0.032 0.968 36 H 0.080 0.920 37 H 0.081 0.919 38 H 0.096 0.904 39 H 0.089 0.911 40 H 0.071 0.929 41 H 0.075 0.925 42 H 0.058 0.942 43 H 0.098 0.902 44 H 0.046 0.954 45 H 0.100 0.900 46 H 0.077 0.923 47 H 0.091 0.909 48 H 0.098 0.902 49 H 0.048 0.952 50 H 0.160 0.840 51 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -3.146 6.207 2.307 7.331 hybrid contribution 0.881 -1.992 -0.488 2.232 sum -2.265 4.215 1.819 5.119 Atomic orbital electron populations 1.21786 0.90487 1.04233 1.03564 1.23115 0.97483 0.80783 1.02070 1.85980 1.18227 1.31205 1.87875 1.19378 0.82637 0.94221 0.93333 1.21348 0.93810 0.98785 1.10618 1.23046 0.96690 0.99161 0.89883 1.19884 0.92790 0.95065 1.12362 1.18508 0.87290 0.82000 0.77504 1.90629 1.77213 1.31711 1.48198 1.48051 1.08000 1.18853 1.57104 1.20009 0.96184 0.79547 0.93884 1.21547 1.39087 0.94472 1.03607 0.92864 1.25568 0.94138 1.00090 0.97006 1.70017 1.37858 1.22368 1.23963 0.85613 0.78357 0.79153 0.79298 1.19841 1.20264 1.19813 1.21318 0.80695 1.00465 0.97778 1.21744 0.96679 0.99850 0.96867 1.21949 0.94669 0.97402 0.92170 1.61961 1.24893 1.39399 1.02614 1.22442 1.01167 0.95178 0.93841 1.22427 0.86649 0.99654 1.03531 1.21076 0.92100 0.98207 0.93382 1.20466 0.94466 0.95318 1.08609 0.91384 0.91293 0.88352 0.91605 0.91820 0.84630 0.80247 0.96756 0.92014 0.91909 0.90411 0.91090 0.92902 0.92487 0.94176 0.90170 0.95365 0.89994 0.92288 0.90942 0.90178 0.95236 0.84001 0.82354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.31 10.28 71.98 0.74 -1.57 16 2 C 0.04 0.92 5.45 71.98 0.39 1.31 16 3 O -0.32 -9.13 10.12 -90.28 -0.91 -10.04 16 4 C 0.15 4.95 6.70 22.63 0.15 5.10 16 5 C -0.23 -8.35 9.01 22.33 0.20 -8.14 16 6 C -0.07 -2.99 7.47 22.50 0.17 -2.82 16 7 C -0.20 -8.32 5.58 -20.08 -0.11 -8.43 16 8 C 0.56 25.33 7.45 86.72 0.65 25.98 16 9 O -0.59 -28.63 16.25 -3.99 -0.06 -28.70 16 10 N -0.59 -26.23 2.46 -829.82 -2.05 -28.28 16 11 C 0.22 10.72 4.64 85.63 0.40 11.11 16 12 C -0.55 -27.68 7.47 25.60 0.19 -27.49 16 13 H 0.05 2.78 7.81 -2.91 -0.02 2.76 16 14 C 0.03 1.72 5.32 84.65 0.45 2.18 16 15 N -0.90 -46.65 13.29 21.45 0.28 -46.37 16 16 Si 0.95 39.91 29.54 68.60 2.03 41.93 16 17 H -0.27 -11.59 7.11 99.48 0.71 -10.89 16 18 H -0.28 -11.42 7.11 99.48 0.71 -10.72 16 19 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 20 C 0.12 4.64 5.46 86.38 0.47 5.11 16 21 C -0.11 -3.79 5.46 30.59 0.17 -3.63 16 22 C 0.07 1.84 4.96 86.30 0.43 2.27 16 23 N -0.56 -14.42 5.02 -948.84 -4.76 -19.19 16 24 C 0.02 0.51 9.32 127.69 1.19 1.70 16 25 C 0.03 0.49 9.57 127.69 1.22 1.71 16 26 C -0.03 -1.02 9.59 22.51 0.22 -0.81 16 27 C -0.17 -5.33 9.97 22.33 0.22 -5.11 16 28 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 29 H 0.07 1.06 8.14 -2.38 -0.02 1.04 16 30 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 31 H 0.07 1.47 7.66 -2.39 -0.02 1.46 16 32 H 0.06 1.48 7.64 -2.38 -0.02 1.46 16 33 H 0.14 4.64 6.28 -2.91 -0.02 4.62 16 34 H 0.18 8.58 2.99 -2.91 -0.01 8.57 16 35 H 0.01 0.73 8.13 -2.39 -0.02 0.71 16 36 H 0.06 3.07 4.08 -2.43 -0.01 3.06 16 37 H 0.27 13.19 8.31 -92.71 -0.77 12.42 16 38 H 0.08 2.95 8.07 -2.39 -0.02 2.93 16 39 H 0.07 2.75 7.35 -2.39 -0.02 2.73 16 40 H 0.05 1.96 8.14 -2.38 -0.02 1.94 16 41 H 0.06 2.00 6.55 -2.38 -0.02 1.98 16 42 H 0.04 1.07 8.12 -2.39 -0.02 1.05 16 43 H 0.08 2.11 8.06 -2.38 -0.02 2.09 16 44 H 0.03 0.64 8.14 -2.39 -0.02 0.62 16 45 H 0.08 1.61 8.12 -2.39 -0.02 1.59 16 46 H 0.06 1.55 6.47 -2.39 -0.02 1.54 16 47 H 0.07 1.33 8.12 -2.39 -0.02 1.31 16 48 H 0.08 1.32 8.12 -2.39 -0.02 1.30 16 49 H 0.03 0.54 8.14 -2.39 -0.02 0.52 16 50 H 0.14 4.67 7.92 -2.91 -0.02 4.65 16 51 H 0.16 3.94 8.06 -2.91 -0.02 3.92 16 Total: -1.00 -60.25 408.42 2.58 -57.68 By element: Atomic # 1 Polarization: 33.59 SS G_CDS: 0.91 Total: 34.50 kcal Atomic # 6 Polarization: -8.68 SS G_CDS: 7.14 Total: -1.53 kcal Atomic # 7 Polarization: -87.31 SS G_CDS: -6.52 Total: -93.83 kcal Atomic # 8 Polarization: -37.76 SS G_CDS: -0.98 Total: -38.74 kcal Atomic # 14 Polarization: 39.91 SS G_CDS: 2.03 Total: 41.93 kcal Total: -60.25 2.58 -57.68 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000064381249.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.418 kcal (2) G-P(sol) polarization free energy of solvation -60.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.675 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds