Wall clock time and date at job start Tue Mar 31 2020 18:01:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08990 * 109.47394 * 2 1 4 4 O 1.42902 * 109.47100 * 120.00096 * 2 1 3 5 5 C 1.35906 * 116.99832 * 276.58644 * 4 2 1 6 6 C 1.38735 * 120.05197 * 357.78078 * 5 4 2 7 7 C 1.38147 * 119.93859 * 179.74271 * 6 5 4 8 8 C 1.38270 * 120.05356 * 0.50766 * 7 6 5 9 9 C 1.38259 * 120.11553 * 359.76788 * 8 7 6 10 10 C 1.38146 * 120.05589 * 359.97438 * 9 8 7 11 11 C 1.50700 * 109.47029 * 239.99876 * 2 1 3 12 12 O 1.21289 * 120.00030 * 254.58882 * 11 2 1 13 13 N 1.34773 * 120.00558 * 74.59150 * 11 2 1 14 14 C 1.46510 * 119.99359 * 5.25094 * 13 11 2 15 15 C 1.50703 * 109.46862 * 92.32327 * 14 13 11 16 16 H 1.07999 * 120.00038 * 0.02562 * 15 14 13 17 17 C 1.37877 * 119.99528 * 179.97438 * 15 14 13 18 18 N 1.31511 * 120.00505 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 119.99748 * 180.02562 * 17 15 14 20 20 H 1.48504 * 109.47486 * 359.97438 * 19 17 15 21 21 H 1.48502 * 109.47495 * 120.00029 * 19 17 15 22 22 H 1.48507 * 109.47166 * 239.99977 * 19 17 15 23 23 C 1.46492 * 120.00636 * 185.25090 * 13 11 2 24 24 C 1.53003 * 109.47458 * 90.00021 * 23 13 11 25 25 C 1.52991 * 109.47265 * 180.02562 * 24 23 13 26 26 N 1.46899 * 109.47090 * 180.02562 * 25 24 23 27 27 C 1.46901 * 110.99978 * 66.04605 * 26 25 24 28 28 C 1.46899 * 111.00251 * 189.99540 * 26 25 24 29 29 H 1.09002 * 109.47384 * 295.19002 * 1 2 3 30 30 H 1.09000 * 109.47080 * 175.19383 * 1 2 3 31 31 H 1.08994 * 109.47125 * 55.19503 * 1 2 3 32 32 H 1.07998 * 120.03039 * 359.97438 * 6 5 4 33 33 H 1.07998 * 119.97129 * 180.23033 * 7 6 5 34 34 H 1.08001 * 119.93836 * 179.74545 * 8 7 6 35 35 H 1.07999 * 119.97234 * 179.97438 * 9 8 7 36 36 H 1.07997 * 120.03106 * 179.97438 * 10 9 8 37 37 H 1.08997 * 109.46822 * 212.32569 * 14 13 11 38 38 H 1.09002 * 109.47028 * 332.32306 * 14 13 11 39 39 H 0.97000 * 120.00503 * 180.02562 * 18 17 15 40 40 H 1.09005 * 109.47070 * 210.00146 * 23 13 11 41 41 H 1.09007 * 109.47131 * 329.99604 * 23 13 11 42 42 H 1.08997 * 109.46847 * 300.00257 * 24 23 13 43 43 H 1.09001 * 109.46624 * 59.99793 * 24 23 13 44 44 H 1.09005 * 109.46889 * 299.99896 * 25 24 23 45 45 H 1.08998 * 109.47727 * 59.99605 * 25 24 23 46 46 H 1.09000 * 109.47667 * 59.99996 * 27 26 25 47 47 H 1.09005 * 109.47299 * 180.02562 * 27 26 25 48 48 H 1.09000 * 109.47024 * 299.99724 * 27 26 25 49 49 H 1.08997 * 109.46836 * 59.99749 * 28 26 25 50 50 H 1.08997 * 109.47520 * 180.02562 * 28 26 25 51 51 H 1.09004 * 109.47446 * 300.00519 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0063 -0.6737 1.1668 5 6 2.0810 0.0541 2.3121 6 6 1.7475 1.4007 2.3026 7 6 1.8191 2.1370 3.4693 8 6 2.2329 1.5355 4.6435 9 6 2.5714 0.1950 4.6543 10 6 2.4963 -0.5470 3.4914 11 6 2.0323 -0.7104 -1.2304 12 8 2.4976 -1.8268 -1.1387 13 7 1.9646 -0.1054 -2.4329 14 6 1.5103 1.2841 -2.5290 15 6 2.7003 2.2069 -2.4691 16 1 3.6954 1.7991 -2.3698 17 6 2.5186 3.5717 -2.5422 18 7 1.3070 4.0682 -2.6637 19 14 3.9937 4.7155 -2.4687 20 1 5.2358 3.9133 -2.3311 21 1 4.0590 5.5200 -3.7152 22 1 3.8589 5.6226 -1.3006 23 6 2.3452 -0.8371 -3.6436 24 6 1.1174 -1.5471 -4.2176 25 6 1.5150 -2.3118 -5.4817 26 7 0.3361 -2.9929 -6.0331 27 6 -0.6578 -2.0220 -6.5101 28 6 0.7184 -3.9236 -7.1034 29 1 -0.3634 0.4374 0.9299 30 1 -0.3633 -1.0240 -0.0861 31 1 -0.3633 0.5865 -0.8438 32 1 1.4285 1.8721 1.3847 33 1 1.5560 3.1845 3.4633 34 1 2.2922 2.1138 5.5536 35 1 2.8947 -0.2725 5.5727 36 1 2.7611 -1.5940 3.5003 37 1 0.9845 1.4299 -3.4726 38 1 0.8375 1.5046 -1.7003 39 1 1.1792 5.0284 -2.7154 40 1 2.7390 -0.1383 -4.3817 41 1 3.1093 -1.5745 -3.3974 42 1 0.7236 -2.2458 -3.4795 43 1 0.3533 -0.8097 -4.4637 44 1 1.9091 -1.6133 -6.2199 45 1 2.2790 -3.0491 -5.2352 46 1 -0.2154 -1.4025 -7.2902 47 1 -1.5204 -2.5530 -6.9128 48 1 -0.9754 -1.3900 -5.6807 49 1 1.4014 -4.6741 -6.7054 50 1 -0.1731 -4.4140 -7.4942 51 1 1.2108 -3.3731 -7.9050 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068225721.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:01:28 Heat of formation + Delta-G solvation = -42.597420 kcal Electronic energy + Delta-G solvation = -29563.627287 eV Core-core repulsion = 25656.585396 eV Total energy + Delta-G solvation = -3907.041891 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.27734 -39.01912 -37.65366 -36.95182 -35.23271 -33.07732 -32.25142 -31.10911 -30.47636 -29.36871 -27.63974 -27.45530 -26.11829 -24.29545 -23.05984 -22.86172 -22.32029 -21.32722 -20.63110 -18.54974 -18.10106 -16.83066 -16.29206 -16.11074 -15.61495 -15.47877 -15.35622 -15.18210 -14.87161 -14.59492 -14.44161 -14.13178 -14.07621 -13.70106 -13.26170 -13.08962 -12.84765 -12.54192 -12.41181 -12.28869 -12.11196 -12.04733 -11.79492 -11.66009 -11.61630 -11.45490 -11.39983 -11.23719 -11.16217 -10.97700 -10.87160 -10.71841 -10.41535 -10.33430 -10.10756 -9.79075 -9.05412 -8.82701 -8.64883 -8.36075 -7.96041 -7.82577 -6.28867 -4.36855 1.51099 1.63400 3.05353 3.15528 3.24776 3.26790 3.30981 3.92576 3.97433 4.15666 4.28277 4.96056 5.04123 5.05022 5.07185 5.12226 5.13657 5.23583 5.28587 5.32697 5.37820 5.45840 5.53817 5.54858 5.60362 5.63356 5.66695 5.76043 5.77351 5.82805 5.87828 5.96240 5.98194 5.99478 6.13445 6.18002 6.29815 6.44319 6.52761 6.57545 6.60054 6.67761 6.69255 6.93622 7.01928 7.04047 7.06593 7.40650 7.66467 7.70037 7.93305 8.19482 8.68319 8.88825 9.32237 10.77430 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.008816 B = 0.003748 C = 0.002846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3175.214921 B = 7468.291056 C = 9837.242651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.065 3.935 3 H 0.113 0.887 4 O -0.290 6.290 5 C 0.138 3.862 6 C -0.208 4.208 7 C -0.078 4.078 8 C -0.168 4.168 9 C -0.085 4.085 10 C -0.157 4.157 11 C 0.525 3.475 12 O -0.550 6.550 13 N -0.589 5.589 14 C 0.229 3.771 15 C -0.543 4.543 16 H 0.063 0.937 17 C 0.068 3.932 18 N -0.889 5.889 19 Si 0.894 3.106 20 H -0.271 1.271 21 H -0.282 1.282 22 H -0.281 1.281 23 C 0.123 3.877 24 C -0.129 4.129 25 C 0.059 3.941 26 N -0.548 5.548 27 C 0.021 3.979 28 C 0.025 3.975 29 H 0.069 0.931 30 H 0.066 0.934 31 H 0.088 0.912 32 H 0.137 0.863 33 H 0.123 0.877 34 H 0.119 0.881 35 H 0.124 0.876 36 H 0.128 0.872 37 H 0.038 0.962 38 H 0.044 0.956 39 H 0.266 0.734 40 H 0.079 0.921 41 H 0.074 0.926 42 H 0.070 0.930 43 H 0.065 0.935 44 H 0.035 0.965 45 H 0.074 0.926 46 H 0.025 0.975 47 H 0.064 0.936 48 H 0.074 0.926 49 H 0.067 0.933 50 H 0.065 0.935 51 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.988 -6.914 2.394 7.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.006 3.994 3 H 0.131 0.869 4 O -0.202 6.202 5 C 0.092 3.908 6 C -0.226 4.226 7 C -0.096 4.096 8 C -0.186 4.186 9 C -0.103 4.103 10 C -0.176 4.176 11 C 0.312 3.688 12 O -0.429 6.429 13 N -0.321 5.321 14 C 0.109 3.891 15 C -0.581 4.581 16 H 0.081 0.919 17 C -0.136 4.136 18 N -0.527 5.527 19 Si 0.721 3.279 20 H -0.196 1.196 21 H -0.207 1.207 22 H -0.207 1.207 23 C -0.001 4.001 24 C -0.168 4.168 25 C -0.069 4.069 26 N -0.272 5.272 27 C -0.127 4.127 28 C -0.123 4.123 29 H 0.088 0.912 30 H 0.085 0.915 31 H 0.107 0.893 32 H 0.155 0.845 33 H 0.141 0.859 34 H 0.137 0.863 35 H 0.142 0.858 36 H 0.146 0.854 37 H 0.057 0.943 38 H 0.061 0.939 39 H 0.075 0.925 40 H 0.097 0.903 41 H 0.092 0.908 42 H 0.089 0.911 43 H 0.084 0.916 44 H 0.054 0.946 45 H 0.093 0.907 46 H 0.044 0.956 47 H 0.082 0.918 48 H 0.092 0.908 49 H 0.086 0.914 50 H 0.084 0.916 51 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -3.017 -7.791 2.736 8.791 hybrid contribution 1.022 1.666 -0.828 2.123 sum -1.995 -6.124 1.908 6.718 Atomic orbital electron populations 1.22306 0.93054 1.03501 1.04022 1.22292 0.95474 0.98339 0.83284 0.86908 1.86158 1.80353 1.38193 1.15506 1.19137 0.94733 0.90279 0.86640 1.21501 1.07154 0.93657 1.00306 1.20966 0.97052 0.99570 0.92056 1.20998 1.04091 0.95306 0.98229 1.20885 0.98357 0.94040 0.97065 1.20415 1.05771 1.00896 0.90482 1.19811 0.78872 0.85834 0.84311 1.90630 1.46122 1.20025 1.86142 1.48035 1.64469 1.15074 1.04511 1.19637 0.95710 0.74767 0.98982 1.21553 0.93687 0.91027 1.51865 0.91917 1.24919 0.96060 0.98067 0.94531 1.69915 1.20531 1.13192 1.49080 0.86493 0.82815 0.80694 0.77888 1.19569 1.20749 1.20679 1.21220 0.96178 0.95868 0.86786 1.21950 0.99044 0.99212 0.96597 1.22070 0.91865 0.96909 0.96105 1.61971 1.13022 1.19162 1.33076 1.22441 0.95426 0.95144 0.99702 1.22365 1.00840 0.96291 0.92832 0.91229 0.91528 0.89321 0.84501 0.85881 0.86323 0.85777 0.85393 0.94349 0.93872 0.92451 0.90265 0.90774 0.91114 0.91604 0.94632 0.90711 0.95643 0.91763 0.90758 0.91434 0.91622 0.95840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.80 8.94 37.16 0.33 -2.47 16 2 C 0.07 1.25 1.80 -27.88 -0.05 1.20 16 3 H 0.11 2.27 5.05 -51.93 -0.26 2.01 16 4 O -0.29 -5.65 9.38 -38.92 -0.37 -6.02 16 5 C 0.14 2.38 6.52 -39.22 -0.26 2.12 16 6 C -0.21 -3.37 8.32 -39.43 -0.33 -3.70 16 7 C -0.08 -1.09 10.04 -39.60 -0.40 -1.49 16 8 C -0.17 -2.10 10.04 -39.56 -0.40 -2.49 16 9 C -0.09 -1.07 10.04 -39.61 -0.40 -1.47 16 10 C -0.16 -2.34 9.99 -39.43 -0.39 -2.73 16 11 C 0.53 11.18 6.97 -10.99 -0.08 11.11 16 12 O -0.55 -13.00 16.12 -13.92 -0.22 -13.22 16 13 N -0.59 -12.03 2.46 -175.05 -0.43 -12.46 16 14 C 0.23 5.10 4.72 -5.19 -0.02 5.07 16 15 C -0.54 -13.56 9.28 -34.44 -0.32 -13.88 16 16 H 0.06 1.63 7.81 -52.49 -0.41 1.22 16 17 C 0.07 1.72 5.46 -17.82 -0.10 1.62 16 18 N -0.89 -23.27 13.29 55.43 0.74 -22.53 16 19 Si 0.89 20.03 29.54 -169.99 -5.02 15.01 16 20 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 21 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 22 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 23 C 0.12 2.21 5.46 -4.04 -0.02 2.19 16 24 C -0.13 -2.02 5.46 -26.73 -0.15 -2.16 16 25 C 0.06 0.79 4.96 -3.83 -0.02 0.77 16 26 N -0.55 -7.01 5.02 -251.26 -1.26 -8.27 16 27 C 0.02 0.24 9.32 60.07 0.56 0.80 16 28 C 0.03 0.26 9.57 60.06 0.57 0.83 16 29 H 0.07 1.03 7.31 -51.93 -0.38 0.65 16 30 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 31 H 0.09 1.45 6.17 -51.93 -0.32 1.13 16 32 H 0.14 2.30 5.70 -52.49 -0.30 2.00 16 33 H 0.12 1.48 8.06 -52.49 -0.42 1.05 16 34 H 0.12 1.17 8.06 -52.49 -0.42 0.74 16 35 H 0.12 1.18 8.06 -52.49 -0.42 0.76 16 36 H 0.13 1.76 8.06 -52.49 -0.42 1.34 16 37 H 0.04 0.89 8.09 -51.93 -0.42 0.47 16 38 H 0.04 0.96 4.48 -51.93 -0.23 0.73 16 39 H 0.27 6.64 8.31 -40.82 -0.34 6.30 16 40 H 0.08 1.40 8.07 -51.93 -0.42 0.98 16 41 H 0.07 1.36 7.36 -51.93 -0.38 0.98 16 42 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 43 H 0.07 1.04 6.55 -51.93 -0.34 0.70 16 44 H 0.04 0.46 8.12 -51.93 -0.42 0.04 16 45 H 0.07 0.98 8.06 -51.93 -0.42 0.56 16 46 H 0.02 0.29 8.14 -51.93 -0.42 -0.14 16 47 H 0.06 0.65 8.12 -51.93 -0.42 0.23 16 48 H 0.07 0.91 6.47 -51.93 -0.34 0.58 16 49 H 0.07 0.66 8.12 -51.93 -0.42 0.24 16 50 H 0.06 0.59 8.12 -51.93 -0.42 0.17 16 51 H 0.02 0.23 8.14 -51.93 -0.42 -0.19 16 LS Contribution 410.74 15.07 6.19 6.19 Total: -1.00 -29.20 410.74 -10.26 -39.46 By element: Atomic # 1 Polarization: 14.94 SS G_CDS: -8.42 Total: 6.52 kcal Atomic # 6 Polarization: -3.23 SS G_CDS: -1.46 Total: -4.69 kcal Atomic # 7 Polarization: -42.30 SS G_CDS: -0.95 Total: -43.26 kcal Atomic # 8 Polarization: -18.65 SS G_CDS: -0.59 Total: -19.24 kcal Atomic # 14 Polarization: 20.03 SS G_CDS: -5.02 Total: 15.01 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -29.20 -10.26 -39.46 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068225721.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.135 kcal (2) G-P(sol) polarization free energy of solvation -29.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.463 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds