Wall clock time and date at job start Tue Mar 31 2020 18:01:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08990 * 109.47394 * 2 1 4 4 O 1.42902 * 109.47100 * 120.00096 * 2 1 3 5 5 C 1.35906 * 116.99832 * 276.58644 * 4 2 1 6 6 C 1.38735 * 120.05197 * 357.78078 * 5 4 2 7 7 C 1.38147 * 119.93859 * 179.74271 * 6 5 4 8 8 C 1.38270 * 120.05356 * 0.50766 * 7 6 5 9 9 C 1.38259 * 120.11553 * 359.76788 * 8 7 6 10 10 C 1.38146 * 120.05589 * 359.97438 * 9 8 7 11 11 C 1.50700 * 109.47029 * 239.99876 * 2 1 3 12 12 O 1.21289 * 120.00030 * 254.58882 * 11 2 1 13 13 N 1.34773 * 120.00558 * 74.59150 * 11 2 1 14 14 C 1.46510 * 119.99359 * 5.25094 * 13 11 2 15 15 C 1.50703 * 109.46862 * 92.32327 * 14 13 11 16 16 H 1.07999 * 120.00038 * 0.02562 * 15 14 13 17 17 C 1.37877 * 119.99528 * 179.97438 * 15 14 13 18 18 N 1.31511 * 120.00505 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 119.99748 * 180.02562 * 17 15 14 20 20 H 1.48504 * 109.47486 * 359.97438 * 19 17 15 21 21 H 1.48502 * 109.47495 * 120.00029 * 19 17 15 22 22 H 1.48507 * 109.47166 * 239.99977 * 19 17 15 23 23 C 1.46492 * 120.00636 * 185.25090 * 13 11 2 24 24 C 1.53003 * 109.47458 * 90.00021 * 23 13 11 25 25 C 1.52991 * 109.47265 * 180.02562 * 24 23 13 26 26 N 1.46899 * 109.47090 * 180.02562 * 25 24 23 27 27 C 1.46901 * 110.99978 * 66.04605 * 26 25 24 28 28 C 1.46899 * 111.00251 * 189.99540 * 26 25 24 29 29 H 1.09002 * 109.47384 * 295.19002 * 1 2 3 30 30 H 1.09000 * 109.47080 * 175.19383 * 1 2 3 31 31 H 1.08994 * 109.47125 * 55.19503 * 1 2 3 32 32 H 1.07998 * 120.03039 * 359.97438 * 6 5 4 33 33 H 1.07998 * 119.97129 * 180.23033 * 7 6 5 34 34 H 1.08001 * 119.93836 * 179.74545 * 8 7 6 35 35 H 1.07999 * 119.97234 * 179.97438 * 9 8 7 36 36 H 1.07997 * 120.03106 * 179.97438 * 10 9 8 37 37 H 1.08997 * 109.46822 * 212.32569 * 14 13 11 38 38 H 1.09002 * 109.47028 * 332.32306 * 14 13 11 39 39 H 0.97000 * 120.00503 * 180.02562 * 18 17 15 40 40 H 1.09005 * 109.47070 * 210.00146 * 23 13 11 41 41 H 1.09007 * 109.47131 * 329.99604 * 23 13 11 42 42 H 1.08997 * 109.46847 * 300.00257 * 24 23 13 43 43 H 1.09001 * 109.46624 * 59.99793 * 24 23 13 44 44 H 1.09005 * 109.46889 * 299.99896 * 25 24 23 45 45 H 1.08998 * 109.47727 * 59.99605 * 25 24 23 46 46 H 1.09000 * 109.47667 * 59.99996 * 27 26 25 47 47 H 1.09005 * 109.47299 * 180.02562 * 27 26 25 48 48 H 1.09000 * 109.47024 * 299.99724 * 27 26 25 49 49 H 1.08997 * 109.46836 * 59.99749 * 28 26 25 50 50 H 1.08997 * 109.47520 * 180.02562 * 28 26 25 51 51 H 1.09004 * 109.47446 * 300.00519 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0063 -0.6737 1.1668 5 6 2.0810 0.0541 2.3121 6 6 1.7475 1.4007 2.3026 7 6 1.8191 2.1370 3.4693 8 6 2.2329 1.5355 4.6435 9 6 2.5714 0.1950 4.6543 10 6 2.4963 -0.5470 3.4914 11 6 2.0323 -0.7104 -1.2304 12 8 2.4976 -1.8268 -1.1387 13 7 1.9646 -0.1054 -2.4329 14 6 1.5103 1.2841 -2.5290 15 6 2.7003 2.2069 -2.4691 16 1 3.6954 1.7991 -2.3698 17 6 2.5186 3.5717 -2.5422 18 7 1.3070 4.0682 -2.6637 19 14 3.9937 4.7155 -2.4687 20 1 5.2358 3.9133 -2.3311 21 1 4.0590 5.5200 -3.7152 22 1 3.8589 5.6226 -1.3006 23 6 2.3452 -0.8371 -3.6436 24 6 1.1174 -1.5471 -4.2176 25 6 1.5150 -2.3118 -5.4817 26 7 0.3361 -2.9929 -6.0331 27 6 -0.6578 -2.0220 -6.5101 28 6 0.7184 -3.9236 -7.1034 29 1 -0.3634 0.4374 0.9299 30 1 -0.3633 -1.0240 -0.0861 31 1 -0.3633 0.5865 -0.8438 32 1 1.4285 1.8721 1.3847 33 1 1.5560 3.1845 3.4633 34 1 2.2922 2.1138 5.5536 35 1 2.8947 -0.2725 5.5727 36 1 2.7611 -1.5940 3.5003 37 1 0.9845 1.4299 -3.4726 38 1 0.8375 1.5046 -1.7003 39 1 1.1792 5.0284 -2.7154 40 1 2.7390 -0.1383 -4.3817 41 1 3.1093 -1.5745 -3.3974 42 1 0.7236 -2.2458 -3.4795 43 1 0.3533 -0.8097 -4.4637 44 1 1.9091 -1.6133 -6.2199 45 1 2.2790 -3.0491 -5.2352 46 1 -0.2154 -1.4025 -7.2902 47 1 -1.5204 -2.5530 -6.9128 48 1 -0.9754 -1.3900 -5.6807 49 1 1.4014 -4.6741 -6.7054 50 1 -0.1731 -4.4140 -7.4942 51 1 1.2108 -3.3731 -7.9050 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068225721.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:01:27 Heat of formation + Delta-G solvation = -57.577245 kcal Electronic energy + Delta-G solvation = -29564.276861 eV Core-core repulsion = 25656.585396 eV Total energy + Delta-G solvation = -3907.691465 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.71631 -40.47274 -38.73418 -38.20502 -36.94578 -34.83042 -33.78366 -32.41278 -31.64922 -30.55134 -29.29584 -28.48846 -27.46587 -25.74129 -24.81342 -24.05008 -23.48328 -22.55828 -21.79488 -20.11477 -19.45234 -18.70467 -17.93002 -17.56642 -16.79005 -16.74263 -16.61720 -16.51890 -16.23414 -16.08598 -15.75335 -15.38912 -15.28981 -14.92256 -14.58917 -14.44844 -14.32707 -14.02340 -13.82170 -13.54290 -13.36940 -13.25675 -13.17673 -13.11100 -12.89250 -12.71210 -12.62804 -12.59365 -12.44655 -12.43356 -12.35196 -12.11080 -12.04742 -11.70571 -11.64964 -11.50665 -10.79044 -10.56541 -9.93360 -9.56994 -9.32542 -9.16190 -8.24808 -6.38852 0.40710 0.50097 1.36635 1.40461 1.46509 1.53382 1.70566 2.35779 2.61193 2.86210 3.02925 3.05965 3.45628 3.79623 3.89645 3.93035 3.95624 4.06628 4.10923 4.21984 4.29989 4.36124 4.40586 4.43747 4.49773 4.52091 4.57519 4.59355 4.64446 4.66564 4.73749 4.77095 4.77899 4.82202 4.98083 4.99926 5.01407 5.10717 5.12396 5.18910 5.26277 5.40688 5.51027 5.60109 5.61128 5.75109 5.89080 6.00183 6.04049 6.10967 6.37155 6.46329 6.73299 7.15770 7.34117 8.80625 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.008816 B = 0.003748 C = 0.002846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3175.214921 B = 7468.291056 C = 9837.242651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.072 3.928 3 H 0.099 0.901 4 O -0.312 6.312 5 C 0.105 3.895 6 C -0.224 4.224 7 C -0.085 4.085 8 C -0.158 4.158 9 C -0.077 4.077 10 C -0.168 4.168 11 C 0.519 3.481 12 O -0.579 6.579 13 N -0.588 5.588 14 C 0.243 3.757 15 C -0.553 4.553 16 H 0.047 0.953 17 C 0.032 3.968 18 N -0.911 5.911 19 Si 0.948 3.052 20 H -0.277 1.277 21 H -0.275 1.275 22 H -0.275 1.275 23 C 0.120 3.880 24 C -0.113 4.113 25 C 0.065 3.935 26 N -0.565 5.565 27 C 0.021 3.979 28 C 0.025 3.975 29 H 0.084 0.916 30 H 0.069 0.931 31 H 0.086 0.914 32 H 0.121 0.879 33 H 0.141 0.859 34 H 0.155 0.845 35 H 0.162 0.838 36 H 0.133 0.867 37 H 0.029 0.971 38 H 0.044 0.956 39 H 0.270 0.730 40 H 0.081 0.919 41 H 0.068 0.932 42 H 0.053 0.947 43 H 0.063 0.937 44 H 0.041 0.959 45 H 0.078 0.922 46 H 0.028 0.972 47 H 0.081 0.919 48 H 0.061 0.939 49 H 0.070 0.930 50 H 0.079 0.921 51 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.918 -6.473 3.501 7.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.013 3.987 3 H 0.116 0.884 4 O -0.225 6.225 5 C 0.060 3.940 6 C -0.243 4.243 7 C -0.103 4.103 8 C -0.176 4.176 9 C -0.095 4.095 10 C -0.186 4.186 11 C 0.306 3.694 12 O -0.460 6.460 13 N -0.319 5.319 14 C 0.123 3.877 15 C -0.592 4.592 16 H 0.065 0.935 17 C -0.170 4.170 18 N -0.550 5.550 19 Si 0.773 3.227 20 H -0.201 1.201 21 H -0.201 1.201 22 H -0.200 1.200 23 C -0.003 4.003 24 C -0.152 4.152 25 C -0.063 4.063 26 N -0.289 5.289 27 C -0.127 4.127 28 C -0.123 4.123 29 H 0.103 0.897 30 H 0.088 0.912 31 H 0.104 0.896 32 H 0.139 0.861 33 H 0.159 0.841 34 H 0.172 0.828 35 H 0.179 0.821 36 H 0.151 0.849 37 H 0.047 0.953 38 H 0.062 0.938 39 H 0.079 0.921 40 H 0.099 0.901 41 H 0.086 0.914 42 H 0.072 0.928 43 H 0.081 0.919 44 H 0.059 0.941 45 H 0.096 0.904 46 H 0.047 0.953 47 H 0.099 0.901 48 H 0.080 0.920 49 H 0.089 0.911 50 H 0.098 0.902 51 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -2.954 -7.347 3.830 8.796 hybrid contribution 1.022 1.527 -1.090 2.136 sum -1.932 -5.820 2.740 6.717 Atomic orbital electron populations 1.22219 0.91144 1.03732 1.04661 1.22154 0.96849 0.96950 0.82770 0.88369 1.86104 1.81234 1.39050 1.16154 1.19480 0.97058 0.90939 0.86539 1.21493 1.08359 0.93631 1.00819 1.21275 0.96812 1.00436 0.91821 1.21448 1.01838 0.95494 0.98811 1.21333 0.96726 0.94069 0.97374 1.20707 1.05759 1.01584 0.90591 1.20249 0.78395 0.85640 0.85077 1.90596 1.47512 1.21234 1.86613 1.48063 1.63976 1.14564 1.05274 1.19365 0.94799 0.75242 0.98337 1.21672 0.93661 0.91820 1.52035 0.93466 1.25499 0.98150 0.99137 0.94200 1.69975 1.21791 1.13671 1.49533 0.85662 0.79870 0.78982 0.78149 1.20143 1.20087 1.20049 1.21360 0.97215 0.95688 0.86010 1.21751 0.97600 0.98653 0.97168 1.21952 0.92403 0.96919 0.95043 1.61955 1.12801 1.19623 1.34519 1.22453 0.95793 0.95122 0.99295 1.22422 1.01727 0.95876 0.92254 0.89727 0.91228 0.89566 0.86088 0.84077 0.82756 0.82080 0.84912 0.95294 0.93805 0.92110 0.90075 0.91352 0.92835 0.91872 0.94069 0.90391 0.95336 0.90076 0.92002 0.91070 0.90189 0.95220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.40 8.94 71.98 0.64 -4.76 16 2 C 0.07 2.89 1.80 29.85 0.05 2.95 16 3 H 0.10 4.19 5.05 -2.39 -0.01 4.18 16 4 O -0.31 -12.67 9.38 -73.87 -0.69 -13.36 16 5 C 0.10 3.66 6.52 22.51 0.15 3.81 16 6 C -0.22 -7.35 8.32 22.37 0.19 -7.17 16 7 C -0.09 -2.24 10.04 22.26 0.22 -2.02 16 8 C -0.16 -3.42 10.04 22.28 0.22 -3.19 16 9 C -0.08 -1.71 10.04 22.25 0.22 -1.49 16 10 C -0.17 -4.86 9.99 22.37 0.22 -4.64 16 11 C 0.52 23.03 6.97 87.66 0.61 23.64 16 12 O -0.58 -28.40 16.12 15.56 0.25 -28.15 16 13 N -0.59 -24.93 2.46 -826.12 -2.03 -26.96 16 14 C 0.24 11.16 4.72 85.63 0.40 11.56 16 15 C -0.55 -28.24 9.28 25.60 0.24 -28.00 16 16 H 0.05 2.52 7.81 -2.91 -0.02 2.50 16 17 C 0.03 1.61 5.46 84.66 0.46 2.07 16 18 N -0.91 -47.77 13.29 21.45 0.28 -47.49 16 19 Si 0.95 41.04 29.54 68.60 2.03 43.06 16 20 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 21 H -0.28 -11.61 7.11 99.48 0.71 -10.90 16 22 H -0.28 -11.60 7.11 99.48 0.71 -10.90 16 23 C 0.12 4.45 5.46 86.38 0.47 4.92 16 24 C -0.11 -3.61 5.46 30.59 0.17 -3.44 16 25 C 0.07 1.74 4.96 86.30 0.43 2.17 16 26 N -0.56 -13.93 5.02 -948.86 -4.76 -18.70 16 27 C 0.02 0.48 9.32 127.69 1.19 1.67 16 28 C 0.02 0.47 9.57 127.69 1.22 1.70 16 29 H 0.08 2.56 7.31 -2.39 -0.02 2.54 16 30 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 31 H 0.09 2.91 6.17 -2.39 -0.01 2.90 16 32 H 0.12 4.26 5.70 -2.91 -0.02 4.24 16 33 H 0.14 3.10 8.06 -2.91 -0.02 3.08 16 34 H 0.15 2.26 8.06 -2.91 -0.02 2.24 16 35 H 0.16 2.35 8.06 -2.91 -0.02 2.33 16 36 H 0.13 3.60 8.06 -2.91 -0.02 3.57 16 37 H 0.03 1.39 8.09 -2.39 -0.02 1.37 16 38 H 0.04 2.02 4.48 -2.39 -0.01 2.01 16 39 H 0.27 13.38 8.31 -92.71 -0.77 12.61 16 40 H 0.08 2.94 8.07 -2.38 -0.02 2.92 16 41 H 0.07 2.60 7.36 -2.38 -0.02 2.59 16 42 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 43 H 0.06 2.04 6.55 -2.39 -0.02 2.03 16 44 H 0.04 1.05 8.12 -2.38 -0.02 1.03 16 45 H 0.08 2.01 8.06 -2.39 -0.02 1.99 16 46 H 0.03 0.61 8.14 -2.39 -0.02 0.59 16 47 H 0.08 1.51 8.12 -2.38 -0.02 1.49 16 48 H 0.06 1.52 6.47 -2.39 -0.02 1.50 16 49 H 0.07 1.29 8.12 -2.39 -0.02 1.27 16 50 H 0.08 1.29 8.12 -2.39 -0.02 1.27 16 51 H 0.03 0.53 8.14 -2.38 -0.02 0.51 16 Total: -1.00 -63.26 410.74 3.10 -60.16 By element: Atomic # 1 Polarization: 30.76 SS G_CDS: 0.90 Total: 31.66 kcal Atomic # 6 Polarization: -7.35 SS G_CDS: 7.12 Total: -0.23 kcal Atomic # 7 Polarization: -86.63 SS G_CDS: -6.51 Total: -93.14 kcal Atomic # 8 Polarization: -41.07 SS G_CDS: -0.44 Total: -41.51 kcal Atomic # 14 Polarization: 41.04 SS G_CDS: 2.03 Total: 43.06 kcal Total: -63.26 3.10 -60.16 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068225721.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.584 kcal (2) G-P(sol) polarization free energy of solvation -63.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.161 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds