Wall clock time and date at job start Tue Mar 31 2020 19:01:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46891 * 109.47208 * 2 1 4 4 C 1.46900 * 111.00268 * 200.16445 * 3 2 1 5 5 C 1.53001 * 109.47036 * 66.04686 * 4 3 2 6 6 O 1.42893 * 109.47063 * 65.00226 * 5 4 3 7 7 C 1.46909 * 110.99870 * 76.21351 * 3 2 1 8 8 C 1.50702 * 109.46983 * 199.39023 * 7 3 2 9 9 O 1.21286 * 120.00070 * 358.37606 * 8 7 3 10 10 N 1.34776 * 119.99736 * 178.64389 * 8 7 3 11 11 C 1.46503 * 119.99919 * 4.71123 * 10 8 7 12 12 C 1.50705 * 109.47024 * 89.99759 * 11 10 8 13 13 H 1.07994 * 120.00209 * 359.97438 * 12 11 10 14 14 C 1.37879 * 119.99527 * 179.97438 * 12 11 10 15 15 N 1.31516 * 119.99464 * 180.02562 * 14 12 11 16 16 Si 1.86795 * 120.00307 * 359.97438 * 14 12 11 17 17 H 1.48498 * 109.47034 * 90.00031 * 16 14 12 18 18 H 1.48496 * 109.47183 * 210.00433 * 16 14 12 19 19 H 1.48503 * 109.46979 * 330.00306 * 16 14 12 20 20 C 1.39926 * 119.99844 * 184.70665 * 10 8 7 21 21 C 1.38872 * 120.07306 * 294.70303 * 20 10 8 22 22 C 1.38111 * 119.93146 * 179.70217 * 21 20 10 23 23 C 1.50700 * 119.96571 * 180.29960 * 22 21 20 24 24 C 1.38278 * 120.06713 * 0.57224 * 22 21 20 25 25 C 1.38286 * 120.14521 * 359.72822 * 24 22 21 26 26 C 1.50700 * 119.96891 * 180.02562 * 25 24 22 27 27 C 1.38110 * 120.06511 * 359.97021 * 25 24 22 28 28 H 1.09000 * 109.47486 * 182.03111 * 1 2 3 29 29 H 1.09004 * 109.47095 * 302.03548 * 1 2 3 30 30 H 1.08998 * 109.47191 * 62.02707 * 1 2 3 31 31 H 1.09004 * 109.46944 * 240.00080 * 2 1 3 32 32 H 1.08995 * 109.47125 * 120.00398 * 2 1 3 33 33 H 1.08997 * 109.47635 * 186.04814 * 4 3 2 34 34 H 1.08999 * 109.47075 * 306.04969 * 4 3 2 35 35 H 1.09000 * 109.46934 * 185.00193 * 5 4 3 36 36 H 1.08997 * 109.47140 * 305.00192 * 5 4 3 37 37 H 0.96694 * 114.00267 * 179.97438 * 6 5 4 38 38 H 1.08998 * 109.47198 * 79.39042 * 7 3 2 39 39 H 1.09000 * 109.46968 * 319.39016 * 7 3 2 40 40 H 1.09002 * 109.46633 * 209.99682 * 11 10 8 41 41 H 1.08992 * 109.47102 * 329.99391 * 11 10 8 42 42 H 0.97003 * 119.99567 * 179.97438 * 15 14 12 43 43 H 1.08005 * 120.03181 * 359.97438 * 21 20 10 44 44 H 1.08998 * 109.46668 * 270.26866 * 23 22 21 45 45 H 1.09001 * 109.47261 * 30.27319 * 23 22 21 46 46 H 1.09001 * 109.46728 * 150.27675 * 23 22 21 47 47 H 1.08007 * 119.92757 * 179.70161 * 24 22 21 48 48 H 1.08999 * 109.46927 * 269.97674 * 26 25 24 49 49 H 1.08999 * 109.46976 * 29.97381 * 26 25 24 50 50 H 1.08995 * 109.46999 * 149.97410 * 26 25 24 51 51 H 1.08008 * 120.03286 * 180.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 3.4089 1.4522 -0.4727 5 6 3.4662 1.0458 -1.9467 6 8 2.7528 2.0025 -2.7326 7 6 1.8870 1.9902 1.3320 8 6 1.9347 3.4914 1.2086 9 8 2.0958 4.0057 0.1221 10 7 1.8038 4.2622 2.3064 11 6 1.7187 3.6421 3.6310 12 6 3.1036 3.4960 4.2071 13 1 3.9613 3.8310 3.6428 14 6 3.2756 2.9345 5.4545 15 7 4.4841 2.8074 5.9575 16 14 1.7920 2.3556 6.4308 17 1 1.5081 0.9351 6.1041 18 1 2.0748 2.4826 7.8830 19 1 0.6135 3.1889 6.0812 20 6 1.7492 5.6548 2.1809 21 6 2.8536 6.3553 1.7139 22 6 2.7944 7.7291 1.5854 23 6 3.9902 8.4893 1.0723 24 6 1.6410 8.4083 1.9324 25 6 0.5416 7.7144 2.4036 26 6 -0.7136 8.4586 2.7801 27 6 0.5924 6.3399 2.5285 28 1 -0.3634 -1.0270 0.0364 29 1 -0.3633 0.5451 0.8712 30 1 -0.3633 0.4820 -0.9076 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 3.7816 2.4704 -0.3618 34 1 4.0261 0.7732 0.1156 35 1 4.5055 1.0098 -2.2734 36 1 3.0121 0.0627 -2.0705 37 1 2.7478 1.8082 -3.6798 38 1 2.7049 1.6517 1.9680 39 1 0.9361 1.6919 1.7735 40 1 1.1163 4.2696 4.2878 41 1 1.2562 2.6591 3.5429 42 1 4.6050 2.4127 6.8353 43 1 3.7564 5.8258 1.4473 44 1 4.6269 8.7733 1.9102 45 1 4.5540 7.8588 0.3848 46 1 3.6544 9.3858 0.5510 47 1 1.5989 9.4832 1.8356 48 1 -0.6681 8.7388 3.8325 49 1 -0.8008 9.3567 2.1685 50 1 -1.5797 7.8187 2.6115 51 1 -0.2668 5.7984 2.8963 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070943022.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:01:57 Heat of formation + Delta-G solvation = -72.809142 kcal Electronic energy + Delta-G solvation = -30218.437335 eV Core-core repulsion = 26310.085365 eV Total energy + Delta-G solvation = -3908.351970 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.57369 -40.03233 -38.75894 -37.02446 -36.78932 -34.69714 -34.41441 -32.46015 -32.02666 -30.55711 -29.61516 -28.11627 -27.61557 -27.00398 -24.52796 -23.92801 -23.33812 -21.61560 -21.47401 -19.97124 -19.14143 -18.37388 -18.10051 -17.77340 -17.16744 -17.03601 -16.65549 -16.32349 -16.12922 -15.58813 -15.25746 -14.82078 -14.63881 -14.60723 -14.43751 -14.24096 -14.17745 -14.03105 -13.99779 -13.88287 -13.67336 -13.33456 -13.29734 -13.01589 -12.81560 -12.71314 -12.58711 -12.44459 -12.38023 -12.34573 -12.12497 -12.04301 -11.95954 -11.76152 -11.60896 -10.89640 -10.82320 -10.64958 -10.08206 -9.47822 -9.28407 -9.12014 -8.35089 -6.43717 0.37321 0.44205 1.35163 1.37864 1.47741 1.68764 2.04513 2.29952 2.74692 2.91958 2.98257 3.45975 3.72921 3.91489 3.91663 3.96321 4.13325 4.17360 4.19189 4.29229 4.35337 4.38400 4.44685 4.44841 4.46292 4.55134 4.64070 4.65269 4.68386 4.70480 4.71460 4.77707 4.87326 4.89624 4.92189 4.99636 5.01773 5.07004 5.10068 5.31829 5.36461 5.37713 5.49250 5.55461 5.66715 5.76754 5.91090 6.09798 6.16583 6.23900 6.51120 6.60729 7.07012 7.18757 7.33977 8.81497 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.007118 B = 0.005268 C = 0.003722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3932.658692 B = 5314.068925 C = 7520.761799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.043 3.957 3 N -0.523 5.523 4 C 0.050 3.950 5 C 0.090 3.910 6 O -0.578 6.578 7 C 0.048 3.952 8 C 0.515 3.485 9 O -0.552 6.552 10 N -0.564 5.564 11 C 0.222 3.778 12 C -0.542 4.542 13 H 0.022 0.978 14 C 0.021 3.979 15 N -0.941 5.941 16 Si 0.941 3.059 17 H -0.254 1.254 18 H -0.283 1.283 19 H -0.240 1.240 20 C 0.146 3.854 21 C -0.139 4.139 22 C -0.082 4.082 23 C -0.107 4.107 24 C -0.131 4.131 25 C -0.075 4.075 26 C -0.105 4.105 27 C -0.149 4.149 28 H 0.082 0.918 29 H 0.044 0.956 30 H 0.053 0.947 31 H 0.094 0.906 32 H 0.041 0.959 33 H 0.047 0.953 34 H 0.053 0.947 35 H 0.062 0.938 36 H 0.068 0.932 37 H 0.387 0.613 38 H 0.063 0.937 39 H 0.116 0.884 40 H 0.042 0.958 41 H 0.054 0.946 42 H 0.270 0.730 43 H 0.084 0.916 44 H 0.077 0.923 45 H 0.055 0.945 46 H 0.094 0.906 47 H 0.157 0.843 48 H 0.081 0.919 49 H 0.087 0.913 50 H 0.071 0.929 51 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.301 0.805 -10.555 14.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.084 4.084 3 N -0.248 5.248 4 C -0.078 4.078 5 C 0.012 3.988 6 O -0.385 6.385 7 C -0.083 4.083 8 C 0.304 3.696 9 O -0.429 6.429 10 N -0.293 5.293 11 C 0.101 3.899 12 C -0.581 4.581 13 H 0.041 0.959 14 C -0.178 4.178 15 N -0.580 5.580 16 Si 0.762 3.238 17 H -0.178 1.178 18 H -0.208 1.208 19 H -0.163 1.163 20 C 0.055 3.945 21 C -0.159 4.159 22 C -0.083 4.083 23 C -0.164 4.164 24 C -0.149 4.149 25 C -0.075 4.075 26 C -0.161 4.161 27 C -0.169 4.169 28 H 0.101 0.899 29 H 0.064 0.936 30 H 0.072 0.928 31 H 0.112 0.888 32 H 0.059 0.941 33 H 0.065 0.935 34 H 0.071 0.929 35 H 0.080 0.920 36 H 0.086 0.914 37 H 0.235 0.765 38 H 0.081 0.919 39 H 0.134 0.866 40 H 0.060 0.940 41 H 0.072 0.928 42 H 0.079 0.921 43 H 0.102 0.898 44 H 0.095 0.905 45 H 0.074 0.926 46 H 0.113 0.887 47 H 0.174 0.826 48 H 0.100 0.900 49 H 0.106 0.894 50 H 0.090 0.910 51 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -9.497 1.494 -10.729 14.407 hybrid contribution 1.154 -1.251 0.946 1.947 sum -8.343 0.243 -9.783 12.860 Atomic orbital electron populations 1.21740 0.94000 1.02324 1.01776 1.22328 0.97156 0.87037 1.01864 1.61624 1.21272 1.19177 1.22735 1.22195 0.88809 1.00830 0.95989 1.22185 0.95632 0.91698 0.89246 1.86731 1.77277 1.51643 1.22843 1.21889 1.04022 0.90495 0.91870 1.21022 0.75270 0.90351 0.82919 1.90650 1.49039 1.75704 1.27503 1.45651 1.71630 1.03879 1.08137 1.19710 0.96197 0.94451 0.79503 1.21405 0.92311 1.41491 1.02873 0.95940 1.25802 0.99139 0.94865 0.97994 1.70058 1.23971 1.45344 1.18596 0.85815 0.79754 0.80378 0.77827 1.17805 1.20809 1.16322 1.17892 0.94091 0.83256 0.99224 1.21039 0.96833 0.94995 1.03006 1.20113 0.97625 0.92215 0.98360 1.20796 0.94497 0.99972 1.01100 1.21203 0.91835 1.00886 1.00937 1.20151 0.97605 0.92382 0.97401 1.20807 0.92581 1.00111 1.02623 1.21192 0.96539 0.95213 1.03945 0.89937 0.93649 0.92786 0.88803 0.94114 0.93480 0.92875 0.91995 0.91426 0.76539 0.91904 0.86617 0.93973 0.92830 0.92121 0.89761 0.90470 0.92633 0.88737 0.82567 0.90036 0.89422 0.91030 0.85372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.17 10.05 71.98 0.72 -2.44 16 2 C 0.04 1.08 5.55 86.31 0.48 1.55 16 3 N -0.52 -17.69 3.96 -900.80 -3.57 -21.26 16 4 C 0.05 1.66 4.96 86.30 0.43 2.09 16 5 C 0.09 2.29 7.13 71.98 0.51 2.81 16 6 O -0.58 -17.17 13.61 -148.98 -2.03 -19.19 16 7 C 0.05 1.83 3.78 85.56 0.32 2.16 16 8 C 0.51 23.45 7.23 87.66 0.63 24.08 16 9 O -0.55 -27.96 14.61 -3.05 -0.04 -28.00 16 10 N -0.56 -25.88 2.52 -635.30 -1.60 -27.48 16 11 C 0.22 10.25 4.01 85.63 0.34 10.59 16 12 C -0.54 -30.38 9.94 25.60 0.25 -30.13 16 13 H 0.02 1.46 8.06 -2.91 -0.02 1.44 16 14 C 0.02 1.17 5.47 84.65 0.46 1.63 16 15 N -0.94 -56.79 13.96 21.45 0.30 -56.49 16 16 Si 0.94 40.24 27.47 68.60 1.88 42.12 16 17 H -0.25 -10.09 7.11 99.48 0.71 -9.38 16 18 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 19 H -0.24 -9.33 6.54 99.48 0.65 -8.67 16 20 C 0.15 6.47 4.93 38.15 0.19 6.66 16 21 C -0.14 -6.12 8.86 22.39 0.20 -5.92 16 22 C -0.08 -2.87 5.88 -19.89 -0.12 -2.99 16 23 C -0.11 -2.91 10.01 71.24 0.71 -2.20 16 24 C -0.13 -3.83 9.35 22.29 0.21 -3.63 16 25 C -0.07 -2.25 5.88 -19.88 -0.12 -2.37 16 26 C -0.10 -2.13 10.01 71.24 0.71 -1.42 16 27 C -0.15 -5.52 9.22 22.39 0.21 -5.32 16 28 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 29 H 0.04 1.09 6.74 -2.39 -0.02 1.08 16 30 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 31 H 0.09 1.96 5.81 -2.38 -0.01 1.95 16 32 H 0.04 0.99 7.99 -2.39 -0.02 0.97 16 33 H 0.05 1.98 6.63 -2.39 -0.02 1.96 16 34 H 0.05 1.63 8.12 -2.39 -0.02 1.61 16 35 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 36 H 0.07 1.35 6.08 -2.39 -0.01 1.33 16 37 H 0.39 6.98 9.12 -74.06 -0.68 6.31 16 38 H 0.06 2.60 7.95 -2.39 -0.02 2.58 16 39 H 0.12 3.90 5.86 -2.39 -0.01 3.88 16 40 H 0.04 1.89 6.83 -2.39 -0.02 1.88 16 41 H 0.05 2.23 5.83 -2.39 -0.01 2.21 16 42 H 0.27 15.11 8.31 -92.71 -0.77 14.34 16 43 H 0.08 4.14 8.06 -2.91 -0.02 4.11 16 44 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 45 H 0.05 1.59 8.09 -2.39 -0.02 1.57 16 46 H 0.09 1.95 8.08 -2.39 -0.02 1.93 16 47 H 0.16 3.29 8.06 -2.91 -0.02 3.27 16 48 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 49 H 0.09 1.39 8.08 -2.39 -0.02 1.37 16 50 H 0.07 1.36 8.08 -2.39 -0.02 1.35 16 51 H 0.13 4.33 8.06 -2.91 -0.02 4.31 16 Total: -1.00 -79.03 409.68 1.29 -77.74 By element: Atomic # 1 Polarization: 37.21 SS G_CDS: 0.19 Total: 37.40 kcal Atomic # 6 Polarization: -11.00 SS G_CDS: 6.16 Total: -4.84 kcal Atomic # 7 Polarization: -100.36 SS G_CDS: -4.87 Total: -105.23 kcal Atomic # 8 Polarization: -45.12 SS G_CDS: -2.07 Total: -47.20 kcal Atomic # 14 Polarization: 40.24 SS G_CDS: 1.88 Total: 42.12 kcal Total: -79.03 1.29 -77.74 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070943022.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.934 kcal (2) G-P(sol) polarization free energy of solvation -79.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.744 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds