Wall clock time and date at job start Tue Mar 31 2020 19:24:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.42893 * 109.47626 * 2 1 4 4 C 1.35899 * 117.00449 * 180.02562 * 3 2 1 5 5 C 1.38736 * 120.05460 * 179.97438 * 4 3 2 6 6 C 1.38139 * 119.94371 * 180.02562 * 5 4 3 7 7 C 1.38275 * 120.05450 * 0.27818 * 6 5 4 8 8 C 1.50702 * 119.94272 * 179.70189 * 7 6 5 9 9 N 1.46902 * 109.47046 * 90.00109 * 8 7 6 10 10 C 1.46903 * 110.99971 * 293.94921 * 9 8 7 11 11 C 1.46897 * 110.99877 * 170.00025 * 9 8 7 12 12 H 1.08995 * 109.47448 * 64.50558 * 11 9 8 13 13 C 1.53001 * 109.46895 * 304.50502 * 11 9 8 14 14 C 1.50700 * 109.47195 * 184.50788 * 11 9 8 15 15 O 1.21290 * 120.00048 * 24.83035 * 14 11 9 16 16 N 1.34777 * 120.00334 * 204.83741 * 14 11 9 17 17 C 1.46501 * 119.99637 * 4.74484 * 16 14 11 18 18 C 1.46496 * 120.00193 * 184.75263 * 16 14 11 19 19 C 1.50704 * 109.47496 * 89.99679 * 18 16 14 20 20 H 1.08000 * 119.99748 * 359.97438 * 19 18 16 21 21 C 1.37873 * 120.00502 * 180.02562 * 19 18 16 22 22 N 1.31518 * 119.99580 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 120.00282 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.46907 * 0.02562 * 23 21 19 25 25 H 1.48505 * 109.46631 * 119.99808 * 23 21 19 26 26 H 1.48497 * 109.47155 * 239.99683 * 23 21 19 27 27 C 1.38266 * 120.11024 * 359.44574 * 7 6 5 28 28 C 1.38149 * 120.05625 * 0.55044 * 27 7 6 29 29 H 1.09001 * 109.47115 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47003 * 299.99657 * 1 2 3 31 31 H 1.09004 * 109.47411 * 60.00205 * 1 2 3 32 32 H 1.09011 * 109.47246 * 239.99946 * 2 1 3 33 33 H 1.09005 * 109.47298 * 120.00337 * 2 1 3 34 34 H 1.08004 * 120.02821 * 0.02562 * 5 4 3 35 35 H 1.08000 * 119.97837 * 180.02562 * 6 5 4 36 36 H 1.08996 * 109.46687 * 209.99396 * 8 7 6 37 37 H 1.09002 * 109.47183 * 330.00081 * 8 7 6 38 38 H 1.09001 * 109.46997 * 65.44390 * 10 9 8 39 39 H 1.09001 * 109.47358 * 185.44124 * 10 9 8 40 40 H 1.08992 * 109.47339 * 305.44726 * 10 9 8 41 41 H 1.09002 * 109.47081 * 307.80815 * 13 11 9 42 42 H 1.08999 * 109.47373 * 67.81265 * 13 11 9 43 43 H 1.09003 * 109.46718 * 187.81624 * 13 11 9 44 44 H 1.08999 * 109.46837 * 93.51167 * 17 16 14 45 45 H 1.08999 * 109.46922 * 213.50981 * 17 16 14 46 46 H 1.08996 * 109.47353 * 333.50958 * 17 16 14 47 47 H 1.09004 * 109.47074 * 209.99212 * 18 16 14 48 48 H 1.09000 * 109.47489 * 329.99580 * 18 16 14 49 49 H 0.96998 * 119.99989 * 179.97438 * 22 21 19 50 50 H 1.08001 * 119.97143 * 180.25689 * 27 7 6 51 51 H 1.07995 * 120.02850 * 179.70317 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3537 1.5252 -0.0005 5 6 3.8852 2.8067 -0.0011 6 6 5.2550 2.9851 -0.0022 7 6 6.0962 1.8876 -0.0085 8 6 7.5902 2.0851 -0.0165 9 7 8.0833 2.1472 1.3659 10 6 7.5765 3.3429 2.0525 11 6 9.5510 2.1009 1.4038 12 1 9.9553 2.9896 0.9193 13 6 10.0410 0.8517 0.6686 14 6 10.0153 2.0548 2.8368 15 8 9.2821 1.6170 3.6981 16 7 11.2453 2.5001 3.1614 17 6 12.0912 3.1242 2.1410 18 6 11.7364 2.3600 4.5344 19 6 12.4506 1.0410 4.6804 20 1 12.5304 0.3737 3.8350 21 6 13.0014 0.6858 5.8934 22 7 12.9038 1.4982 6.9230 23 14 13.8861 -0.9494 6.0745 24 1 13.8581 -1.6735 4.7783 25 1 15.2953 -0.7079 6.4758 26 1 13.2087 -1.7664 7.1132 27 6 5.5690 0.6095 -0.0022 28 6 4.1998 0.4258 -0.0010 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.8933 -0.5139 -0.8901 33 1 1.8933 -0.5139 0.8900 34 1 3.2285 3.6642 -0.0007 35 1 5.6694 3.9824 -0.0022 36 1 8.0641 1.2512 -0.5341 37 1 7.8310 3.0159 -0.5302 38 1 6.4938 3.2706 2.1565 39 1 8.0323 3.4156 3.0399 40 1 7.8270 4.2297 1.4705 41 1 9.5299 -0.0263 1.0635 42 1 9.8266 0.9490 -0.3956 43 1 11.1157 0.7426 0.8143 44 1 11.9522 4.2050 2.1652 45 1 13.1362 2.8877 2.3410 46 1 11.8145 2.7443 1.1575 47 1 12.4265 3.1735 4.7583 48 1 10.8952 2.3962 5.2267 49 1 13.2909 1.2482 7.7765 50 1 6.2281 -0.2461 -0.0030 51 1 3.7884 -0.5728 -0.0010 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000072951325.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:24:10 Heat of formation + Delta-G solvation = -34.724045 kcal Electronic energy + Delta-G solvation = -28892.744204 eV Core-core repulsion = 24986.043728 eV Total energy + Delta-G solvation = -3906.700476 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.40068 -39.56163 -38.14602 -36.40121 -34.70926 -32.74342 -32.38818 -31.44359 -30.95121 -30.05804 -27.88235 -26.65426 -25.78395 -24.51846 -24.25914 -23.40480 -22.19664 -21.53357 -20.52853 -18.45194 -18.23971 -16.74123 -16.52354 -16.37352 -16.18802 -16.01129 -15.25358 -15.07230 -14.84299 -14.40796 -14.28837 -14.07235 -13.75079 -13.62455 -13.56139 -13.21545 -13.15214 -12.85426 -12.55408 -12.23805 -12.14876 -12.08906 -11.98843 -11.90197 -11.75561 -11.66037 -11.34320 -11.24994 -11.10508 -11.06687 -10.92676 -10.85280 -10.78802 -10.56532 -10.14193 -9.58196 -9.09085 -8.78578 -8.42544 -8.31209 -8.03317 -7.58360 -6.02865 -4.07560 1.23135 1.30508 2.95889 3.30368 3.37515 3.40500 3.43330 3.54097 3.90291 4.30265 4.46064 4.55346 4.57226 4.71879 4.76120 4.79375 4.89693 5.00857 5.09645 5.17227 5.24900 5.27401 5.30888 5.33774 5.38703 5.41838 5.46239 5.59767 5.63731 5.65268 5.66573 5.76260 5.81917 5.90259 5.93438 5.94136 6.13799 6.19429 6.24016 6.25048 6.37437 6.55320 6.63632 6.97729 7.14978 7.19256 7.24713 7.48086 7.58467 7.94329 8.25395 8.46512 8.93039 9.16996 9.57704 11.05183 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.017553 B = 0.002234 C = 0.002119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1594.787186 B =12532.241628 C =13209.942586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.054 3.946 3 O -0.319 6.319 4 C 0.126 3.874 5 C -0.154 4.154 6 C -0.073 4.073 7 C -0.108 4.108 8 C 0.093 3.907 9 N -0.512 5.512 10 C 0.023 3.977 11 C 0.064 3.936 12 H 0.055 0.945 13 C -0.142 4.142 14 C 0.511 3.489 15 O -0.521 6.521 16 N -0.605 5.605 17 C 0.081 3.919 18 C 0.246 3.754 19 C -0.525 4.525 20 H 0.058 0.942 21 C 0.060 3.940 22 N -0.894 5.894 23 Si 0.898 3.102 24 H -0.273 1.273 25 H -0.284 1.284 26 H -0.283 1.283 27 C -0.055 4.055 28 C -0.209 4.209 29 H 0.077 0.923 30 H 0.066 0.934 31 H 0.065 0.935 32 H 0.061 0.939 33 H 0.062 0.938 34 H 0.128 0.872 35 H 0.125 0.875 36 H 0.088 0.912 37 H 0.040 0.960 38 H 0.070 0.930 39 H 0.077 0.923 40 H 0.019 0.981 41 H 0.073 0.927 42 H 0.061 0.939 43 H 0.069 0.931 44 H 0.042 0.958 45 H 0.073 0.927 46 H 0.058 0.942 47 H 0.031 0.969 48 H 0.044 0.956 49 H 0.262 0.738 50 H 0.126 0.874 51 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.277 1.714 -19.635 26.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.021 4.021 3 O -0.233 6.233 4 C 0.080 3.920 5 C -0.173 4.173 6 C -0.091 4.091 7 C -0.109 4.109 8 C -0.034 4.034 9 N -0.237 5.237 10 C -0.125 4.125 11 C -0.048 4.048 12 H 0.073 0.927 13 C -0.200 4.200 14 C 0.296 3.704 15 O -0.396 6.396 16 N -0.339 5.339 17 C -0.063 4.063 18 C 0.126 3.874 19 C -0.563 4.563 20 H 0.076 0.924 21 C -0.142 4.142 22 N -0.534 5.534 23 Si 0.726 3.274 24 H -0.198 1.198 25 H -0.210 1.210 26 H -0.209 1.209 27 C -0.073 4.073 28 C -0.228 4.228 29 H 0.096 0.904 30 H 0.085 0.915 31 H 0.084 0.916 32 H 0.079 0.921 33 H 0.081 0.919 34 H 0.146 0.854 35 H 0.143 0.857 36 H 0.106 0.894 37 H 0.058 0.942 38 H 0.089 0.911 39 H 0.096 0.904 40 H 0.037 0.963 41 H 0.092 0.908 42 H 0.079 0.921 43 H 0.088 0.912 44 H 0.061 0.939 45 H 0.091 0.909 46 H 0.077 0.923 47 H 0.049 0.951 48 H 0.062 0.938 49 H 0.072 0.928 50 H 0.144 0.856 51 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -17.925 1.230 -18.701 25.933 hybrid contribution 1.023 -0.389 -0.179 1.109 sum -16.902 0.841 -18.880 25.354 Atomic orbital electron populations 1.21774 0.92812 1.02839 1.03473 1.22770 0.95783 0.82079 1.01481 1.86045 1.19273 1.29237 1.88784 1.18981 0.82074 0.94225 0.96671 1.20346 0.95082 0.94714 1.07133 1.20866 0.92113 0.98637 0.97517 1.19626 0.95049 0.93106 1.03117 1.21104 0.91239 1.01279 0.89769 1.61730 1.07088 1.40631 1.14258 1.22477 1.01436 0.88971 0.99610 1.21690 0.88360 0.99172 0.95574 0.92720 1.21814 1.01924 0.97263 0.98959 1.20031 0.82026 0.78912 0.89402 1.90674 1.53933 1.44932 1.50097 1.48159 1.14520 1.58493 1.12691 1.21678 0.96757 0.96568 0.91307 1.19271 0.95159 0.96752 0.76182 1.21474 1.34916 1.03421 0.96535 0.92420 1.24947 0.96365 0.97285 0.95613 1.69946 1.45472 1.36430 1.01516 0.86447 0.79078 0.83739 0.78183 1.19802 1.21010 1.20870 1.20824 0.94002 0.96958 0.95558 1.21215 0.94375 0.97900 1.09293 0.90389 0.91494 0.91602 0.92104 0.91927 0.85450 0.85678 0.89426 0.94207 0.91100 0.90386 0.96254 0.90819 0.92061 0.91244 0.93915 0.90864 0.92338 0.95107 0.93782 0.92797 0.85571 0.85670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.87 10.28 37.15 0.38 -0.49 16 2 C 0.05 0.41 5.46 37.15 0.20 0.62 16 3 O -0.32 -3.45 10.14 -19.42 -0.20 -3.65 16 4 C 0.13 1.44 6.69 -39.22 -0.26 1.18 16 5 C -0.15 -1.69 9.99 -39.43 -0.39 -2.09 16 6 C -0.07 -0.79 8.10 -39.60 -0.32 -1.11 16 7 C -0.11 -1.26 4.88 -104.60 -0.51 -1.77 16 8 C 0.09 1.08 4.86 -4.97 -0.02 1.05 16 9 N -0.51 -7.70 4.33 -237.73 -1.03 -8.72 16 10 C 0.02 0.34 8.71 60.07 0.52 0.86 16 11 C 0.06 0.99 1.62 -68.87 -0.11 0.88 16 12 H 0.06 0.74 6.64 -51.93 -0.35 0.40 16 13 C -0.14 -1.93 8.27 37.16 0.31 -1.62 16 14 C 0.51 10.79 5.79 -10.99 -0.06 10.72 16 15 O -0.52 -13.42 15.04 5.55 0.08 -13.33 16 16 N -0.61 -12.95 2.86 -182.95 -0.52 -13.47 16 17 C 0.08 1.29 10.06 59.85 0.60 1.89 16 18 C 0.25 6.50 5.21 -5.19 -0.03 6.47 16 19 C -0.52 -14.95 9.39 -34.44 -0.32 -15.27 16 20 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 21 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 22 N -0.89 -26.81 13.29 55.43 0.74 -26.08 16 23 Si 0.90 21.99 29.54 -169.99 -5.02 16.97 16 24 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 25 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 26 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 27 C -0.05 -0.63 9.69 -39.60 -0.38 -1.01 16 28 C -0.21 -2.28 9.04 -39.43 -0.36 -2.63 16 29 H 0.08 0.31 8.14 -51.93 -0.42 -0.12 16 30 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 31 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.06 0.40 7.66 -51.92 -0.40 0.00 16 33 H 0.06 0.46 7.66 -51.93 -0.40 0.06 16 34 H 0.13 1.21 8.06 -52.48 -0.42 0.79 16 35 H 0.13 1.15 8.03 -52.49 -0.42 0.73 16 36 H 0.09 0.92 5.81 -51.93 -0.30 0.61 16 37 H 0.04 0.41 8.01 -51.93 -0.42 -0.01 16 38 H 0.07 1.01 6.53 -51.93 -0.34 0.67 16 39 H 0.08 1.41 6.15 -51.93 -0.32 1.09 16 40 H 0.02 0.24 8.07 -51.93 -0.42 -0.18 16 41 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 42 H 0.06 0.63 6.59 -51.93 -0.34 0.29 16 43 H 0.07 0.97 7.47 -51.93 -0.39 0.58 16 44 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 45 H 0.07 1.19 8.10 -51.93 -0.42 0.77 16 46 H 0.06 0.76 5.32 -51.93 -0.28 0.48 16 47 H 0.03 0.82 8.07 -51.93 -0.42 0.40 16 48 H 0.04 1.32 7.36 -51.93 -0.38 0.94 16 49 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 50 H 0.13 1.33 8.06 -52.49 -0.42 0.90 16 51 H 0.13 1.11 6.30 -52.49 -0.33 0.78 16 LS Contribution 406.74 15.07 6.13 6.13 Total: -1.00 -34.55 406.74 -9.10 -43.65 By element: Atomic # 1 Polarization: 7.62 SS G_CDS: -8.42 Total: -0.80 kcal Atomic # 6 Polarization: 0.16 SS G_CDS: -0.86 Total: -0.70 kcal Atomic # 7 Polarization: -47.46 SS G_CDS: -0.82 Total: -48.28 kcal Atomic # 8 Polarization: -16.87 SS G_CDS: -0.11 Total: -16.98 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -34.55 -9.10 -43.65 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072951325.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.925 kcal (2) G-P(sol) polarization free energy of solvation -34.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.650 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds