Wall clock time and date at job start Tue Mar 31 2020 19:24:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.42893 * 109.47626 * 2 1 4 4 C 1.35899 * 117.00449 * 180.02562 * 3 2 1 5 5 C 1.38736 * 120.05460 * 179.97438 * 4 3 2 6 6 C 1.38139 * 119.94371 * 180.02562 * 5 4 3 7 7 C 1.38275 * 120.05450 * 0.27818 * 6 5 4 8 8 C 1.50702 * 119.94272 * 179.70189 * 7 6 5 9 9 N 1.46902 * 109.47046 * 90.00109 * 8 7 6 10 10 C 1.46903 * 110.99971 * 293.94921 * 9 8 7 11 11 C 1.46897 * 110.99877 * 170.00025 * 9 8 7 12 12 H 1.08995 * 109.47448 * 64.50558 * 11 9 8 13 13 C 1.53001 * 109.46895 * 304.50502 * 11 9 8 14 14 C 1.50700 * 109.47195 * 184.50788 * 11 9 8 15 15 O 1.21290 * 120.00048 * 24.83035 * 14 11 9 16 16 N 1.34777 * 120.00334 * 204.83741 * 14 11 9 17 17 C 1.46501 * 119.99637 * 4.74484 * 16 14 11 18 18 C 1.46496 * 120.00193 * 184.75263 * 16 14 11 19 19 C 1.50704 * 109.47496 * 89.99679 * 18 16 14 20 20 H 1.08000 * 119.99748 * 359.97438 * 19 18 16 21 21 C 1.37873 * 120.00502 * 180.02562 * 19 18 16 22 22 N 1.31518 * 119.99580 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 120.00282 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.46907 * 0.02562 * 23 21 19 25 25 H 1.48505 * 109.46631 * 119.99808 * 23 21 19 26 26 H 1.48497 * 109.47155 * 239.99683 * 23 21 19 27 27 C 1.38266 * 120.11024 * 359.44574 * 7 6 5 28 28 C 1.38149 * 120.05625 * 0.55044 * 27 7 6 29 29 H 1.09001 * 109.47115 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47003 * 299.99657 * 1 2 3 31 31 H 1.09004 * 109.47411 * 60.00205 * 1 2 3 32 32 H 1.09011 * 109.47246 * 239.99946 * 2 1 3 33 33 H 1.09005 * 109.47298 * 120.00337 * 2 1 3 34 34 H 1.08004 * 120.02821 * 0.02562 * 5 4 3 35 35 H 1.08000 * 119.97837 * 180.02562 * 6 5 4 36 36 H 1.08996 * 109.46687 * 209.99396 * 8 7 6 37 37 H 1.09002 * 109.47183 * 330.00081 * 8 7 6 38 38 H 1.09001 * 109.46997 * 65.44390 * 10 9 8 39 39 H 1.09001 * 109.47358 * 185.44124 * 10 9 8 40 40 H 1.08992 * 109.47339 * 305.44726 * 10 9 8 41 41 H 1.09002 * 109.47081 * 307.80815 * 13 11 9 42 42 H 1.08999 * 109.47373 * 67.81265 * 13 11 9 43 43 H 1.09003 * 109.46718 * 187.81624 * 13 11 9 44 44 H 1.08999 * 109.46837 * 93.51167 * 17 16 14 45 45 H 1.08999 * 109.46922 * 213.50981 * 17 16 14 46 46 H 1.08996 * 109.47353 * 333.50958 * 17 16 14 47 47 H 1.09004 * 109.47074 * 209.99212 * 18 16 14 48 48 H 1.09000 * 109.47489 * 329.99580 * 18 16 14 49 49 H 0.96998 * 119.99989 * 179.97438 * 22 21 19 50 50 H 1.08001 * 119.97143 * 180.25689 * 27 7 6 51 51 H 1.07995 * 120.02850 * 179.70317 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3537 1.5252 -0.0005 5 6 3.8852 2.8067 -0.0011 6 6 5.2550 2.9851 -0.0022 7 6 6.0962 1.8876 -0.0085 8 6 7.5902 2.0851 -0.0165 9 7 8.0833 2.1472 1.3659 10 6 7.5765 3.3429 2.0525 11 6 9.5510 2.1009 1.4038 12 1 9.9553 2.9896 0.9193 13 6 10.0410 0.8517 0.6686 14 6 10.0153 2.0548 2.8368 15 8 9.2821 1.6170 3.6981 16 7 11.2453 2.5001 3.1614 17 6 12.0912 3.1242 2.1410 18 6 11.7364 2.3600 4.5344 19 6 12.4506 1.0410 4.6804 20 1 12.5304 0.3737 3.8350 21 6 13.0014 0.6858 5.8934 22 7 12.9038 1.4982 6.9230 23 14 13.8861 -0.9494 6.0745 24 1 13.8581 -1.6735 4.7783 25 1 15.2953 -0.7079 6.4758 26 1 13.2087 -1.7664 7.1132 27 6 5.5690 0.6095 -0.0022 28 6 4.1998 0.4258 -0.0010 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.8933 -0.5139 -0.8901 33 1 1.8933 -0.5139 0.8900 34 1 3.2285 3.6642 -0.0007 35 1 5.6694 3.9824 -0.0022 36 1 8.0641 1.2512 -0.5341 37 1 7.8310 3.0159 -0.5302 38 1 6.4938 3.2706 2.1565 39 1 8.0323 3.4156 3.0399 40 1 7.8270 4.2297 1.4705 41 1 9.5299 -0.0263 1.0635 42 1 9.8266 0.9490 -0.3956 43 1 11.1157 0.7426 0.8143 44 1 11.9522 4.2050 2.1652 45 1 13.1362 2.8877 2.3410 46 1 11.8145 2.7443 1.1575 47 1 12.4265 3.1735 4.7583 48 1 10.8952 2.3962 5.2267 49 1 13.2909 1.2482 7.7765 50 1 6.2281 -0.2461 -0.0030 51 1 3.7884 -0.5728 -0.0010 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000072951325.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:24:09 Heat of formation + Delta-G solvation = -57.097302 kcal Electronic energy + Delta-G solvation = -28893.714381 eV Core-core repulsion = 24986.043728 eV Total energy + Delta-G solvation = -3907.670653 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.31165 -40.90129 -39.13069 -37.54048 -36.48956 -34.75609 -33.22246 -32.46757 -31.74887 -31.00126 -29.77924 -27.70328 -27.27736 -25.86213 -25.05475 -24.84262 -23.25927 -22.55496 -21.52645 -19.76798 -19.21065 -18.67409 -18.14914 -17.41850 -17.03649 -16.98087 -16.68541 -16.46682 -16.03675 -15.80355 -15.54059 -15.27226 -14.80582 -14.59240 -14.40644 -14.26243 -14.17013 -14.03632 -13.89293 -13.46879 -13.42343 -13.29901 -13.21125 -13.01942 -12.82215 -12.78698 -12.66772 -12.62172 -12.57209 -12.37330 -12.29431 -12.19624 -12.01863 -11.67056 -11.61952 -11.57755 -10.65283 -10.43154 -9.90851 -9.40031 -9.25661 -8.98458 -8.22271 -6.37249 0.41200 0.46044 1.35924 1.38636 1.50401 1.86275 2.24448 2.28193 2.41320 2.74874 3.07063 3.18598 3.68041 3.83753 3.90235 3.97670 4.04307 4.09608 4.12570 4.16506 4.30084 4.35493 4.40721 4.41105 4.46341 4.49513 4.58888 4.68205 4.70858 4.75675 4.78268 4.87304 4.92824 4.93122 4.95471 5.02238 5.04049 5.12652 5.19645 5.23843 5.26903 5.35110 5.43062 5.56937 5.70301 5.83097 5.85746 6.00113 6.06654 6.14717 6.47941 6.71655 6.82994 7.29266 7.54772 8.84969 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.017553 B = 0.002234 C = 0.002119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1594.787186 B =12532.241628 C =13209.942586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.045 3.955 3 O -0.334 6.334 4 C 0.114 3.886 5 C -0.166 4.166 6 C -0.073 4.073 7 C -0.121 4.121 8 C 0.098 3.902 9 N -0.535 5.535 10 C 0.031 3.969 11 C 0.077 3.923 12 H 0.087 0.913 13 C -0.138 4.138 14 C 0.502 3.498 15 O -0.581 6.581 16 N -0.613 5.613 17 C 0.076 3.924 18 C 0.260 3.740 19 C -0.539 4.539 20 H 0.056 0.944 21 C 0.004 3.996 22 N -0.930 5.930 23 Si 0.969 3.031 24 H -0.264 1.264 25 H -0.269 1.269 26 H -0.283 1.283 27 C -0.067 4.067 28 C -0.216 4.216 29 H 0.098 0.902 30 H 0.060 0.940 31 H 0.065 0.935 32 H 0.072 0.928 33 H 0.063 0.937 34 H 0.137 0.863 35 H 0.142 0.858 36 H 0.101 0.899 37 H 0.062 0.938 38 H 0.071 0.929 39 H 0.036 0.964 40 H 0.046 0.954 41 H 0.052 0.948 42 H 0.105 0.895 43 H 0.066 0.934 44 H 0.066 0.934 45 H 0.067 0.933 46 H 0.096 0.904 47 H 0.022 0.978 48 H -0.005 1.005 49 H 0.266 0.734 50 H 0.132 0.868 51 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.939 1.208 -22.575 28.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.029 4.029 3 O -0.249 6.249 4 C 0.068 3.932 5 C -0.184 4.184 6 C -0.092 4.092 7 C -0.122 4.122 8 C -0.028 4.028 9 N -0.261 5.261 10 C -0.117 4.117 11 C -0.034 4.034 12 H 0.104 0.896 13 C -0.196 4.196 14 C 0.290 3.710 15 O -0.461 6.461 16 N -0.345 5.345 17 C -0.066 4.066 18 C 0.139 3.861 19 C -0.578 4.578 20 H 0.074 0.926 21 C -0.194 4.194 22 N -0.570 5.570 23 Si 0.793 3.207 24 H -0.188 1.188 25 H -0.194 1.194 26 H -0.209 1.209 27 C -0.086 4.086 28 C -0.234 4.234 29 H 0.117 0.883 30 H 0.079 0.921 31 H 0.085 0.915 32 H 0.090 0.910 33 H 0.081 0.919 34 H 0.155 0.845 35 H 0.160 0.840 36 H 0.120 0.880 37 H 0.080 0.920 38 H 0.090 0.910 39 H 0.055 0.945 40 H 0.065 0.935 41 H 0.071 0.929 42 H 0.123 0.877 43 H 0.085 0.915 44 H 0.084 0.916 45 H 0.086 0.914 46 H 0.114 0.886 47 H 0.040 0.960 48 H 0.013 0.987 49 H 0.075 0.925 50 H 0.150 0.850 51 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -17.573 0.746 -21.699 27.932 hybrid contribution 0.821 -0.198 0.745 1.126 sum -16.753 0.548 -20.953 26.833 Atomic orbital electron populations 1.21801 0.91426 1.04139 1.03197 1.23027 0.96932 0.80936 1.02039 1.86035 1.18993 1.31099 1.88727 1.19207 0.82546 0.94661 0.96755 1.20594 0.95591 0.95093 1.07172 1.21068 0.91976 0.99298 0.96830 1.19753 0.95373 0.93344 1.03687 1.21168 0.90997 1.02952 0.87717 1.61641 1.06719 1.40994 1.16724 1.22330 1.01076 0.90318 0.98012 1.21604 0.89073 1.01496 0.91236 0.89562 1.21842 1.01339 0.95243 1.01137 1.21154 0.81076 0.77177 0.91585 1.90636 1.55521 1.47445 1.52460 1.48182 1.15646 1.58871 1.11807 1.21976 0.95577 0.97786 0.91305 1.18716 0.92783 0.95927 0.78716 1.21734 1.35139 1.04133 0.96756 0.92623 1.25904 0.97147 1.01188 0.95211 1.70070 1.46337 1.38462 1.02101 0.85347 0.78235 0.78803 0.78303 1.18841 1.19404 1.20914 1.21025 0.94407 0.97386 0.95753 1.21408 0.94313 0.98623 1.09081 0.88295 0.92075 0.91543 0.90998 0.91866 0.84497 0.84024 0.88049 0.91960 0.91018 0.94525 0.93536 0.92911 0.87680 0.91496 0.91596 0.91407 0.88559 0.96049 0.98726 0.92464 0.85022 0.84230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.53 10.28 71.98 0.74 -0.79 16 2 C 0.05 0.65 5.46 71.98 0.39 1.04 16 3 O -0.33 -7.04 10.14 -92.42 -0.94 -7.97 16 4 C 0.11 2.52 6.69 22.51 0.15 2.67 16 5 C -0.17 -3.49 9.99 22.37 0.22 -3.26 16 6 C -0.07 -1.46 8.10 22.26 0.18 -1.28 16 7 C -0.12 -2.58 4.88 -19.85 -0.10 -2.68 16 8 C 0.10 1.94 4.86 85.56 0.42 2.36 16 9 N -0.54 -15.19 4.33 -906.05 -3.92 -19.11 16 10 C 0.03 0.89 8.71 127.69 1.11 2.00 16 11 C 0.08 2.23 1.62 44.17 0.07 2.31 16 12 H 0.09 1.97 6.64 -2.39 -0.02 1.95 16 13 C -0.14 -3.35 8.27 71.98 0.60 -2.76 16 14 C 0.50 21.43 5.79 87.66 0.51 21.94 16 15 O -0.58 -31.46 15.04 -3.06 -0.05 -31.51 16 16 N -0.61 -26.46 2.86 -851.13 -2.43 -28.89 16 17 C 0.08 2.26 10.06 127.77 1.29 3.54 16 18 C 0.26 14.38 5.21 85.64 0.45 14.83 16 19 C -0.54 -31.45 9.39 25.60 0.24 -31.21 16 20 H 0.06 3.19 7.81 -2.91 -0.02 3.17 16 21 C 0.00 0.24 5.46 84.65 0.46 0.71 16 22 N -0.93 -57.22 13.29 21.45 0.28 -56.93 16 23 Si 0.97 45.39 29.54 68.60 2.03 47.42 16 24 H -0.26 -11.89 7.11 99.48 0.71 -11.18 16 25 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 26 H -0.28 -13.22 7.11 99.48 0.71 -12.52 16 27 C -0.07 -1.46 9.69 22.26 0.22 -1.24 16 28 C -0.22 -4.51 9.04 22.37 0.20 -4.31 16 29 H 0.10 0.59 8.14 -2.39 -0.02 0.58 16 30 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 32 H 0.07 0.86 7.66 -2.38 -0.02 0.84 16 33 H 0.06 0.88 7.66 -2.38 -0.02 0.86 16 34 H 0.14 2.49 8.06 -2.91 -0.02 2.47 16 35 H 0.14 2.24 8.03 -2.91 -0.02 2.22 16 36 H 0.10 1.72 5.81 -2.39 -0.01 1.70 16 37 H 0.06 0.99 8.01 -2.39 -0.02 0.97 16 38 H 0.07 2.01 6.53 -2.39 -0.02 2.00 16 39 H 0.04 1.36 6.15 -2.39 -0.01 1.34 16 40 H 0.05 1.06 8.07 -2.39 -0.02 1.04 16 41 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 42 H 0.10 1.64 6.59 -2.39 -0.02 1.63 16 43 H 0.07 1.67 7.47 -2.39 -0.02 1.65 16 44 H 0.07 1.67 8.14 -2.39 -0.02 1.66 16 45 H 0.07 2.11 8.10 -2.39 -0.02 2.09 16 46 H 0.10 2.13 5.32 -2.39 -0.01 2.12 16 47 H 0.02 1.20 8.07 -2.39 -0.02 1.18 16 48 H -0.01 -0.35 7.36 -2.39 -0.02 -0.37 16 49 H 0.27 15.32 8.31 -92.71 -0.77 14.55 16 50 H 0.13 2.61 8.06 -2.91 -0.02 2.59 16 51 H 0.14 2.35 6.30 -2.91 -0.02 2.33 16 Total: -1.00 -79.65 406.74 3.02 -76.62 By element: Atomic # 1 Polarization: 15.60 SS G_CDS: 0.90 Total: 16.50 kcal Atomic # 6 Polarization: -3.28 SS G_CDS: 7.15 Total: 3.87 kcal Atomic # 7 Polarization: -98.86 SS G_CDS: -6.07 Total: -104.93 kcal Atomic # 8 Polarization: -38.50 SS G_CDS: -0.98 Total: -39.48 kcal Atomic # 14 Polarization: 45.39 SS G_CDS: 2.03 Total: 47.42 kcal Total: -79.65 3.02 -76.62 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072951325.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.526 kcal (2) G-P(sol) polarization free energy of solvation -79.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.623 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds