Wall clock time and date at job start Tue Mar 31 2020 18:43:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46504 * 109.47199 * 2 1 4 4 C 1.46507 * 120.00020 * 270.00026 * 3 2 1 5 5 C 1.50694 * 109.47083 * 270.00206 * 4 3 2 6 6 H 1.07997 * 120.00093 * 359.97438 * 5 4 3 7 7 C 1.37876 * 119.99973 * 179.97438 * 5 4 3 8 8 N 1.31516 * 120.00073 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 120.00202 * 179.97438 * 7 5 4 10 10 H 1.48497 * 109.46874 * 90.00169 * 9 7 5 11 11 H 1.48501 * 109.47267 * 210.00396 * 9 7 5 12 12 H 1.48503 * 109.47444 * 330.00410 * 9 7 5 13 13 C 1.34773 * 119.99941 * 89.99932 * 3 2 1 14 14 O 1.21285 * 119.99547 * 180.02562 * 13 3 2 15 15 C 1.50692 * 120.00256 * 0.02562 * 13 3 2 16 16 N 1.46896 * 109.47274 * 180.02562 * 15 13 3 17 17 C 1.46906 * 111.00375 * 72.26258 * 16 15 13 18 18 C 1.46906 * 111.00271 * 196.21677 * 16 15 13 19 19 H 1.09004 * 109.46991 * 301.89452 * 18 16 15 20 20 C 1.52994 * 109.46990 * 61.89018 * 18 16 15 21 21 C 1.53004 * 109.47017 * 182.28077 * 20 18 16 22 22 O 1.42902 * 109.46977 * 174.83371 * 21 20 18 23 23 C 1.50699 * 109.47220 * 181.89331 * 18 16 15 24 24 C 1.38234 * 120.00014 * 319.72478 * 23 18 16 25 25 C 1.38239 * 119.99943 * 179.79299 * 24 23 18 26 26 C 1.38232 * 119.99831 * 0.43757 * 25 24 23 27 27 C 1.38240 * 120.00142 * 359.81723 * 26 25 24 28 28 C 1.38231 * 119.99865 * 359.97438 * 27 26 25 29 29 H 1.09000 * 109.47486 * 59.99732 * 1 2 3 30 30 H 1.09003 * 109.47087 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.46864 * 300.00105 * 1 2 3 32 32 H 1.08996 * 109.47409 * 240.00211 * 2 1 3 33 33 H 1.08999 * 109.47369 * 119.99727 * 2 1 3 34 34 H 1.09004 * 109.46524 * 30.00188 * 4 3 2 35 35 H 1.09000 * 109.47014 * 149.99880 * 4 3 2 36 36 H 0.96996 * 120.00428 * 180.02562 * 8 7 5 37 37 H 1.08997 * 109.47706 * 60.00076 * 15 13 3 38 38 H 1.09003 * 109.47171 * 299.99499 * 15 13 3 39 39 H 1.08999 * 109.47175 * 183.95398 * 17 16 15 40 40 H 1.09004 * 109.46566 * 303.95221 * 17 16 15 41 41 H 1.08997 * 109.47200 * 63.95142 * 17 16 15 42 42 H 1.08998 * 109.47082 * 62.28269 * 20 18 16 43 43 H 1.09006 * 109.47520 * 302.28077 * 20 18 16 44 44 H 1.09001 * 109.46886 * 54.83823 * 21 20 18 45 45 H 1.08996 * 109.47248 * 294.83145 * 21 20 18 46 46 H 0.96697 * 114.00044 * 179.97438 * 22 21 20 47 47 H 1.08003 * 120.00165 * 359.97438 * 24 23 18 48 48 H 1.07994 * 120.00027 * 180.27662 * 25 24 23 49 49 H 1.08003 * 120.00480 * 179.83867 * 26 25 24 50 50 H 1.07999 * 119.99847 * 180.02562 * 27 26 25 51 51 H 1.08002 * 120.00063 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2625 2.0719 -1.2688 5 6 3.6857 1.8350 -1.7038 6 1 4.3428 1.2309 -1.0959 7 6 4.1490 2.3896 -2.8780 8 7 3.3490 3.1257 -3.6181 9 14 5.9134 2.0966 -3.4170 10 1 5.9773 0.8753 -4.2593 11 1 6.3920 3.2639 -4.2004 12 1 6.7736 1.9178 -2.2197 13 6 2.2429 2.0166 1.1672 14 8 2.6468 3.1602 1.1671 15 6 1.9923 1.3061 2.4722 16 7 2.3098 2.2063 3.5887 17 6 1.2974 3.2630 3.7174 18 6 2.4519 1.4576 4.8447 19 1 1.5297 0.9138 5.0498 20 6 3.6110 0.4670 4.7196 21 6 3.7230 -0.3523 6.0069 22 8 4.7257 -1.3577 5.8460 23 6 2.7307 2.4172 5.9728 24 6 3.5846 3.4863 5.7757 25 6 3.8370 4.3689 6.8092 26 6 3.2425 4.1774 8.0424 27 6 2.3927 3.1053 8.2410 28 6 2.1370 2.2251 7.2063 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 1.5816 1.6877 -2.0284 35 1 2.0955 3.1411 -1.1384 36 1 3.6748 3.5156 -4.4444 37 1 2.6228 0.4188 2.5299 38 1 0.9444 1.0116 2.5302 39 1 1.5930 3.9554 4.5056 40 1 1.2125 3.8016 2.7736 41 1 0.3355 2.8159 3.9685 42 1 4.5397 1.0133 4.5547 43 1 3.4285 -0.2015 3.8781 44 1 2.7647 -0.8258 6.2206 45 1 3.9961 0.3043 6.8329 46 1 4.8513 -1.9162 6.6253 47 1 4.0523 3.6336 4.8134 48 1 4.5006 5.2066 6.6539 49 1 3.4417 4.8655 8.8507 50 1 1.9279 2.9559 9.2044 51 1 1.4727 1.3878 7.3613 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075899329.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:43:58 Heat of formation + Delta-G solvation = -47.831061 kcal Electronic energy + Delta-G solvation = -29830.014331 eV Core-core repulsion = 25922.745492 eV Total energy + Delta-G solvation = -3907.268839 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.18867 -38.99316 -37.42669 -36.58027 -35.14325 -32.90051 -32.57548 -30.98029 -30.45928 -30.05377 -28.47070 -26.62061 -26.15363 -23.42424 -22.97844 -22.85116 -22.31743 -21.90290 -19.99255 -18.30426 -17.62161 -17.10649 -16.55880 -16.25361 -15.96712 -15.65750 -15.40883 -14.97710 -14.75680 -14.49390 -14.30080 -14.13069 -13.68056 -13.50669 -13.40016 -13.29217 -13.12857 -12.75924 -12.75745 -12.42618 -12.10876 -11.96868 -11.69113 -11.58601 -11.51425 -11.30933 -11.21834 -11.14574 -11.01702 -10.86892 -10.76358 -10.65086 -10.46016 -10.12094 -10.07193 -9.56690 -8.99641 -8.87064 -8.76991 -8.38694 -8.15674 -7.57890 -5.99473 -4.03628 1.21964 1.32623 3.33916 3.40444 3.43712 3.50451 3.54566 3.68446 4.01427 4.32914 4.50124 4.55084 4.76893 4.88617 4.91357 5.01479 5.05343 5.10673 5.14448 5.21293 5.29788 5.34682 5.36400 5.39497 5.43166 5.52258 5.57228 5.63912 5.68256 5.73840 5.80581 5.82933 5.97587 5.99466 6.04236 6.13907 6.24571 6.27384 6.33354 6.46301 6.48795 6.53241 6.89903 6.97081 7.13259 7.19524 7.42487 7.50179 7.62723 7.97885 8.29528 8.50778 8.97101 9.21156 9.61609 11.08563 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.012426 B = 0.002994 C = 0.002938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2252.840847 B = 9349.747475 C = 9528.649913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.107 3.893 3 N -0.601 5.601 4 C 0.249 3.751 5 C -0.523 4.523 6 H 0.057 0.943 7 C 0.060 3.940 8 N -0.896 5.896 9 Si 0.897 3.103 10 H -0.281 1.281 11 H -0.286 1.286 12 H -0.273 1.273 13 C 0.508 3.492 14 O -0.522 6.522 15 C 0.031 3.969 16 N -0.512 5.512 17 C 0.025 3.975 18 C 0.129 3.871 19 H 0.048 0.952 20 C -0.114 4.114 21 C 0.079 3.921 22 O -0.572 6.572 23 C -0.077 4.077 24 C -0.087 4.087 25 C -0.123 4.123 26 C -0.123 4.123 27 C -0.126 4.126 28 C -0.119 4.119 29 H 0.061 0.939 30 H 0.059 0.941 31 H 0.048 0.952 32 H 0.082 0.918 33 H 0.062 0.938 34 H 0.030 0.970 35 H 0.042 0.958 36 H 0.262 0.738 37 H 0.101 0.899 38 H 0.057 0.943 39 H 0.070 0.930 40 H 0.085 0.915 41 H 0.017 0.983 42 H 0.083 0.917 43 H 0.077 0.923 44 H 0.042 0.958 45 H 0.049 0.951 46 H 0.377 0.623 47 H 0.137 0.863 48 H 0.121 0.879 49 H 0.118 0.882 50 H 0.118 0.882 51 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.444 -6.575 23.643 25.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.018 4.018 3 N -0.334 5.334 4 C 0.130 3.870 5 C -0.562 4.562 6 H 0.075 0.925 7 C -0.141 4.141 8 N -0.536 5.536 9 Si 0.725 3.275 10 H -0.207 1.207 11 H -0.211 1.211 12 H -0.198 1.198 13 C 0.294 3.706 14 O -0.398 6.398 15 C -0.100 4.100 16 N -0.236 5.236 17 C -0.122 4.122 18 C 0.021 3.979 19 H 0.066 0.934 20 C -0.152 4.152 21 C 0.001 3.999 22 O -0.377 6.377 23 C -0.077 4.077 24 C -0.105 4.105 25 C -0.141 4.141 26 C -0.141 4.141 27 C -0.144 4.144 28 C -0.137 4.137 29 H 0.080 0.920 30 H 0.077 0.923 31 H 0.067 0.933 32 H 0.100 0.900 33 H 0.080 0.920 34 H 0.048 0.952 35 H 0.060 0.940 36 H 0.072 0.928 37 H 0.118 0.882 38 H 0.075 0.925 39 H 0.089 0.911 40 H 0.104 0.896 41 H 0.035 0.965 42 H 0.102 0.898 43 H 0.096 0.904 44 H 0.060 0.940 45 H 0.067 0.933 46 H 0.224 0.776 47 H 0.155 0.845 48 H 0.139 0.861 49 H 0.136 0.864 50 H 0.136 0.864 51 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -4.745 -5.332 22.737 23.831 hybrid contribution 0.041 -0.846 0.341 0.913 sum -4.704 -6.178 23.079 24.350 Atomic orbital electron populations 1.22222 0.96970 1.01299 1.02196 1.21386 0.93346 0.84459 1.02564 1.48258 1.64244 1.13175 1.07705 1.19225 0.96158 0.93558 0.78092 1.21452 0.96975 1.31688 1.06090 0.92463 1.24928 0.97789 0.94956 0.96452 1.69932 1.35695 1.33613 1.14324 0.86514 0.84841 0.77594 0.78595 1.20715 1.21144 1.19833 1.20069 0.78859 0.87138 0.84576 1.90654 1.44537 1.17793 1.86800 1.22201 1.00462 0.96379 0.90967 1.61530 1.48109 1.12302 1.01660 1.22496 0.91101 0.94639 1.03987 1.20447 0.97092 0.92175 0.88225 0.93392 1.21588 0.99478 0.96822 0.97275 1.22147 0.90277 0.89573 0.97879 1.86503 1.59731 1.48682 1.42829 1.19711 0.97644 0.96400 0.93943 1.21239 0.96460 0.93287 0.99536 1.21237 1.00089 0.99581 0.93216 1.21146 0.97671 0.97962 0.97342 1.21029 0.99170 0.95453 0.98746 1.20968 1.00225 0.99646 0.92902 0.92010 0.92250 0.93311 0.89951 0.91998 0.95196 0.93994 0.92804 0.88160 0.92500 0.91148 0.89644 0.96476 0.89806 0.90419 0.94016 0.93314 0.77615 0.84529 0.86065 0.86434 0.86389 0.86539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.25 10.24 37.16 0.38 -1.87 16 2 C 0.11 1.71 5.93 -4.04 -0.02 1.69 16 3 N -0.60 -12.69 2.46 -175.06 -0.43 -13.12 16 4 C 0.25 6.54 5.16 -5.19 -0.03 6.51 16 5 C -0.52 -15.02 9.39 -34.44 -0.32 -15.34 16 6 H 0.06 1.65 7.81 -52.49 -0.41 1.24 16 7 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 8 N -0.90 -26.94 13.29 55.43 0.74 -26.20 16 9 Si 0.90 22.25 29.54 -169.99 -5.02 17.23 16 10 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 11 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 12 H -0.27 -6.80 7.11 56.52 0.40 -6.40 16 13 C 0.51 10.56 7.38 -10.99 -0.08 10.48 16 14 O -0.52 -13.11 14.44 5.55 0.08 -13.03 16 15 C 0.03 0.47 3.89 -4.98 -0.02 0.45 16 16 N -0.51 -7.51 3.62 -237.73 -0.86 -8.37 16 17 C 0.03 0.37 8.75 60.07 0.53 0.89 16 18 C 0.13 1.50 1.78 -68.86 -0.12 1.38 16 19 H 0.05 0.50 8.00 -51.93 -0.42 0.09 16 20 C -0.11 -1.35 5.00 -26.73 -0.13 -1.48 16 21 C 0.08 0.76 6.55 37.16 0.24 1.01 16 22 O -0.57 -5.96 13.66 -35.23 -0.48 -6.44 16 23 C -0.08 -0.85 2.96 -104.62 -0.31 -1.16 16 24 C -0.09 -1.06 7.92 -39.58 -0.31 -1.37 16 25 C -0.12 -1.30 10.05 -39.58 -0.40 -1.70 16 26 C -0.12 -1.14 10.05 -39.58 -0.40 -1.54 16 27 C -0.13 -1.11 10.05 -39.58 -0.40 -1.51 16 28 C -0.12 -1.12 8.88 -39.58 -0.35 -1.47 16 29 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 30 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.05 0.62 7.22 -51.93 -0.38 0.24 16 32 H 0.08 1.38 8.07 -51.93 -0.42 0.96 16 33 H 0.06 0.83 6.44 -51.93 -0.33 0.50 16 34 H 0.03 0.80 8.07 -51.93 -0.42 0.38 16 35 H 0.04 1.25 7.42 -51.93 -0.39 0.86 16 36 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 37 H 0.10 1.41 4.93 -51.93 -0.26 1.15 16 38 H 0.06 0.76 7.09 -51.93 -0.37 0.39 16 39 H 0.07 0.97 5.96 -51.93 -0.31 0.66 16 40 H 0.08 1.47 6.40 -51.93 -0.33 1.14 16 41 H 0.02 0.21 8.14 -51.93 -0.42 -0.21 16 42 H 0.08 1.16 8.14 -51.93 -0.42 0.73 16 43 H 0.08 0.96 6.04 -51.93 -0.31 0.64 16 44 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 45 H 0.05 0.45 7.02 -51.93 -0.36 0.09 16 46 H 0.38 2.07 9.12 45.56 0.42 2.49 16 47 H 0.14 1.92 7.73 -52.48 -0.41 1.51 16 48 H 0.12 1.12 8.06 -52.49 -0.42 0.69 16 49 H 0.12 0.84 8.06 -52.48 -0.42 0.42 16 50 H 0.12 0.78 8.06 -52.49 -0.42 0.36 16 51 H 0.12 0.89 8.04 -52.49 -0.42 0.46 16 LS Contribution 406.31 15.07 6.12 6.12 Total: -1.00 -34.70 406.31 -9.33 -44.03 By element: Atomic # 1 Polarization: 10.79 SS G_CDS: -7.63 Total: 3.16 kcal Atomic # 6 Polarization: -1.54 SS G_CDS: -1.85 Total: -3.39 kcal Atomic # 7 Polarization: -47.13 SS G_CDS: -0.55 Total: -47.69 kcal Atomic # 8 Polarization: -19.07 SS G_CDS: -0.40 Total: -19.47 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -5.02 Total: 17.23 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -34.70 -9.33 -44.03 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075899329.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.802 kcal (2) G-P(sol) polarization free energy of solvation -34.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.029 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds