Wall clock time and date at job start Tue Mar 31 2020 18:43:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46504 * 109.47199 * 2 1 4 4 C 1.46507 * 120.00020 * 270.00026 * 3 2 1 5 5 C 1.50694 * 109.47083 * 270.00206 * 4 3 2 6 6 H 1.07997 * 120.00093 * 359.97438 * 5 4 3 7 7 C 1.37876 * 119.99973 * 179.97438 * 5 4 3 8 8 N 1.31516 * 120.00073 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 120.00202 * 179.97438 * 7 5 4 10 10 H 1.48497 * 109.46874 * 90.00169 * 9 7 5 11 11 H 1.48501 * 109.47267 * 210.00396 * 9 7 5 12 12 H 1.48503 * 109.47444 * 330.00410 * 9 7 5 13 13 C 1.34773 * 119.99941 * 89.99932 * 3 2 1 14 14 O 1.21285 * 119.99547 * 180.02562 * 13 3 2 15 15 C 1.50692 * 120.00256 * 0.02562 * 13 3 2 16 16 N 1.46896 * 109.47274 * 180.02562 * 15 13 3 17 17 C 1.46906 * 111.00375 * 72.26258 * 16 15 13 18 18 C 1.46906 * 111.00271 * 196.21677 * 16 15 13 19 19 H 1.09004 * 109.46991 * 301.89452 * 18 16 15 20 20 C 1.52994 * 109.46990 * 61.89018 * 18 16 15 21 21 C 1.53004 * 109.47017 * 182.28077 * 20 18 16 22 22 O 1.42902 * 109.46977 * 174.83371 * 21 20 18 23 23 C 1.50699 * 109.47220 * 181.89331 * 18 16 15 24 24 C 1.38234 * 120.00014 * 319.72478 * 23 18 16 25 25 C 1.38239 * 119.99943 * 179.79299 * 24 23 18 26 26 C 1.38232 * 119.99831 * 0.43757 * 25 24 23 27 27 C 1.38240 * 120.00142 * 359.81723 * 26 25 24 28 28 C 1.38231 * 119.99865 * 359.97438 * 27 26 25 29 29 H 1.09000 * 109.47486 * 59.99732 * 1 2 3 30 30 H 1.09003 * 109.47087 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.46864 * 300.00105 * 1 2 3 32 32 H 1.08996 * 109.47409 * 240.00211 * 2 1 3 33 33 H 1.08999 * 109.47369 * 119.99727 * 2 1 3 34 34 H 1.09004 * 109.46524 * 30.00188 * 4 3 2 35 35 H 1.09000 * 109.47014 * 149.99880 * 4 3 2 36 36 H 0.96996 * 120.00428 * 180.02562 * 8 7 5 37 37 H 1.08997 * 109.47706 * 60.00076 * 15 13 3 38 38 H 1.09003 * 109.47171 * 299.99499 * 15 13 3 39 39 H 1.08999 * 109.47175 * 183.95398 * 17 16 15 40 40 H 1.09004 * 109.46566 * 303.95221 * 17 16 15 41 41 H 1.08997 * 109.47200 * 63.95142 * 17 16 15 42 42 H 1.08998 * 109.47082 * 62.28269 * 20 18 16 43 43 H 1.09006 * 109.47520 * 302.28077 * 20 18 16 44 44 H 1.09001 * 109.46886 * 54.83823 * 21 20 18 45 45 H 1.08996 * 109.47248 * 294.83145 * 21 20 18 46 46 H 0.96697 * 114.00044 * 179.97438 * 22 21 20 47 47 H 1.08003 * 120.00165 * 359.97438 * 24 23 18 48 48 H 1.07994 * 120.00027 * 180.27662 * 25 24 23 49 49 H 1.08003 * 120.00480 * 179.83867 * 26 25 24 50 50 H 1.07999 * 119.99847 * 180.02562 * 27 26 25 51 51 H 1.08002 * 120.00063 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2625 2.0719 -1.2688 5 6 3.6857 1.8350 -1.7038 6 1 4.3428 1.2309 -1.0959 7 6 4.1490 2.3896 -2.8780 8 7 3.3490 3.1257 -3.6181 9 14 5.9134 2.0966 -3.4170 10 1 5.9773 0.8753 -4.2593 11 1 6.3920 3.2639 -4.2004 12 1 6.7736 1.9178 -2.2197 13 6 2.2429 2.0166 1.1672 14 8 2.6468 3.1602 1.1671 15 6 1.9923 1.3061 2.4722 16 7 2.3098 2.2063 3.5887 17 6 1.2974 3.2630 3.7174 18 6 2.4519 1.4576 4.8447 19 1 1.5297 0.9138 5.0498 20 6 3.6110 0.4670 4.7196 21 6 3.7230 -0.3523 6.0069 22 8 4.7257 -1.3577 5.8460 23 6 2.7307 2.4172 5.9728 24 6 3.5846 3.4863 5.7757 25 6 3.8370 4.3689 6.8092 26 6 3.2425 4.1774 8.0424 27 6 2.3927 3.1053 8.2410 28 6 2.1370 2.2251 7.2063 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 1.5816 1.6877 -2.0284 35 1 2.0955 3.1411 -1.1384 36 1 3.6748 3.5156 -4.4444 37 1 2.6228 0.4188 2.5299 38 1 0.9444 1.0116 2.5302 39 1 1.5930 3.9554 4.5056 40 1 1.2125 3.8016 2.7736 41 1 0.3355 2.8159 3.9685 42 1 4.5397 1.0133 4.5547 43 1 3.4285 -0.2015 3.8781 44 1 2.7647 -0.8258 6.2206 45 1 3.9961 0.3043 6.8329 46 1 4.8513 -1.9162 6.6253 47 1 4.0523 3.6336 4.8134 48 1 4.5006 5.2066 6.6539 49 1 3.4417 4.8655 8.8507 50 1 1.9279 2.9559 9.2044 51 1 1.4727 1.3878 7.3613 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075899329.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:43:57 Heat of formation + Delta-G solvation = -72.070527 kcal Electronic energy + Delta-G solvation = -29831.065433 eV Core-core repulsion = 25922.745492 eV Total energy + Delta-G solvation = -3908.319941 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.24279 -40.35220 -38.32548 -37.53312 -36.78798 -34.91581 -33.67618 -31.76966 -31.60493 -31.29200 -29.93838 -28.22928 -27.22952 -25.07876 -24.30006 -23.68108 -23.39518 -22.99533 -20.89545 -19.85601 -18.66771 -18.42457 -18.08701 -17.58775 -17.17883 -16.90400 -16.60091 -16.24973 -15.96560 -15.69622 -15.49737 -15.27305 -14.92513 -14.63722 -14.52810 -14.27763 -14.13602 -14.04831 -13.93180 -13.67995 -13.52464 -13.29575 -13.16768 -13.02345 -12.70722 -12.65357 -12.49955 -12.47026 -12.40048 -12.15954 -12.07761 -11.86725 -11.82780 -11.70172 -11.54087 -10.84826 -10.64023 -10.50834 -9.74686 -9.56410 -9.42051 -9.23334 -8.22128 -6.36645 0.46118 0.56247 1.34751 1.38144 1.48601 1.90502 2.21875 2.39878 2.84668 2.91950 3.06973 3.43541 3.69907 3.73019 3.97547 4.06551 4.16384 4.17308 4.20647 4.26369 4.32145 4.34773 4.40661 4.43910 4.46619 4.53756 4.56426 4.64453 4.69291 4.71342 4.79401 4.93899 4.98824 5.01277 5.06009 5.06986 5.17059 5.19816 5.22589 5.24911 5.38370 5.58909 5.59864 5.68885 5.69511 5.86666 5.96008 6.08338 6.13286 6.18989 6.71964 6.86497 6.94466 7.29939 7.58067 8.84689 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.012426 B = 0.002994 C = 0.002938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2252.840847 B = 9349.747475 C = 9528.649913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.099 3.901 3 N -0.607 5.607 4 C 0.266 3.734 5 C -0.541 4.541 6 H 0.050 0.950 7 C 0.008 3.992 8 N -0.929 5.929 9 Si 0.966 3.034 10 H -0.262 1.262 11 H -0.280 1.280 12 H -0.275 1.275 13 C 0.497 3.503 14 O -0.579 6.579 15 C 0.048 3.952 16 N -0.537 5.537 17 C 0.036 3.964 18 C 0.137 3.863 19 H 0.075 0.925 20 C -0.113 4.113 21 C 0.086 3.914 22 O -0.597 6.597 23 C -0.085 4.085 24 C -0.110 4.110 25 C -0.137 4.137 26 C -0.125 4.125 27 C -0.123 4.123 28 C -0.115 4.115 29 H 0.038 0.962 30 H 0.096 0.904 31 H 0.058 0.942 32 H 0.071 0.929 33 H 0.097 0.903 34 H 0.021 0.979 35 H -0.006 1.006 36 H 0.267 0.733 37 H 0.118 0.882 38 H 0.089 0.911 39 H 0.071 0.929 40 H 0.046 0.954 41 H 0.041 0.959 42 H 0.051 0.949 43 H 0.072 0.928 44 H 0.069 0.931 45 H 0.051 0.949 46 H 0.398 0.602 47 H 0.102 0.898 48 H 0.123 0.877 49 H 0.140 0.860 50 H 0.148 0.852 51 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.310 -9.273 26.648 28.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.023 4.023 3 N -0.339 5.339 4 C 0.145 3.855 5 C -0.579 4.579 6 H 0.069 0.931 7 C -0.191 4.191 8 N -0.569 5.569 9 Si 0.790 3.210 10 H -0.186 1.186 11 H -0.206 1.206 12 H -0.200 1.200 13 C 0.285 3.715 14 O -0.458 6.458 15 C -0.082 4.082 16 N -0.262 5.262 17 C -0.111 4.111 18 C 0.029 3.971 19 H 0.093 0.907 20 C -0.151 4.151 21 C 0.008 3.992 22 O -0.405 6.405 23 C -0.085 4.085 24 C -0.129 4.129 25 C -0.155 4.155 26 C -0.142 4.142 27 C -0.140 4.140 28 C -0.133 4.133 29 H 0.057 0.943 30 H 0.115 0.885 31 H 0.077 0.923 32 H 0.089 0.911 33 H 0.115 0.885 34 H 0.039 0.961 35 H 0.012 0.988 36 H 0.076 0.924 37 H 0.135 0.865 38 H 0.106 0.894 39 H 0.090 0.910 40 H 0.065 0.935 41 H 0.059 0.941 42 H 0.069 0.931 43 H 0.091 0.909 44 H 0.087 0.913 45 H 0.069 0.931 46 H 0.248 0.752 47 H 0.120 0.880 48 H 0.141 0.859 49 H 0.158 0.842 50 H 0.166 0.834 51 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -5.632 -8.090 25.774 27.595 hybrid contribution 0.315 0.026 -0.539 0.625 sum -5.317 -8.065 25.235 27.020 Atomic orbital electron populations 1.22142 0.94520 1.03486 1.01579 1.21726 0.95333 0.81482 1.03751 1.48292 1.64383 1.15088 1.06180 1.18630 0.95070 0.91377 0.80458 1.21713 0.97986 1.31843 1.06378 0.93137 1.25841 1.02311 0.94495 0.96475 1.70050 1.37753 1.34298 1.14777 0.85442 0.79120 0.78266 0.78147 1.18646 1.20564 1.20035 1.21162 0.77381 0.86729 0.86188 1.90624 1.46943 1.20476 1.87757 1.22049 1.02545 0.95805 0.87820 1.61382 1.48727 1.13008 1.03041 1.22302 0.92241 0.94686 1.01917 1.20457 0.97943 0.92028 0.86665 0.90701 1.21561 0.98118 0.96764 0.98684 1.22078 0.91406 0.89440 0.96249 1.86448 1.60179 1.49240 1.44671 1.19708 0.97996 0.96044 0.94773 1.21071 0.97968 0.95134 0.98723 1.21360 1.00748 0.99601 0.93777 1.21442 0.97166 0.98609 0.97030 1.21420 0.98267 0.94524 0.99816 1.21238 0.99815 1.00368 0.91874 0.94324 0.88541 0.92270 0.91063 0.88487 0.96149 0.98786 0.92443 0.86482 0.89355 0.91013 0.93480 0.94101 0.93059 0.90929 0.91269 0.93067 0.75213 0.87971 0.85864 0.84240 0.83418 0.83816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.94 10.24 71.98 0.74 -3.20 16 2 C 0.10 3.08 5.93 86.38 0.51 3.60 16 3 N -0.61 -26.44 2.46 -826.16 -2.03 -28.47 16 4 C 0.27 14.83 5.16 85.63 0.44 15.27 16 5 C -0.54 -32.28 9.39 25.60 0.24 -32.04 16 6 H 0.05 3.01 7.81 -2.91 -0.02 2.99 16 7 C 0.01 0.45 5.46 84.65 0.46 0.91 16 8 N -0.93 -57.69 13.29 21.45 0.28 -57.40 16 9 Si 0.97 46.50 29.54 68.60 2.03 48.53 16 10 H -0.26 -11.74 7.11 99.48 0.71 -11.03 16 11 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 12 H -0.28 -13.24 7.11 99.48 0.71 -12.53 16 13 C 0.50 21.39 7.38 87.65 0.65 22.04 16 14 O -0.58 -31.15 14.44 -3.05 -0.04 -31.19 16 15 C 0.05 1.42 3.89 85.55 0.33 1.75 16 16 N -0.54 -15.67 3.62 -906.04 -3.28 -18.94 16 17 C 0.04 1.05 8.75 127.69 1.12 2.17 16 18 C 0.14 2.91 1.78 44.17 0.08 2.99 16 19 H 0.08 1.23 8.00 -2.38 -0.02 1.21 16 20 C -0.11 -2.54 5.00 30.59 0.15 -2.39 16 21 C 0.09 1.42 6.55 71.98 0.47 1.89 16 22 O -0.60 -11.11 13.66 -148.98 -2.04 -13.15 16 23 C -0.08 -1.77 2.96 -19.87 -0.06 -1.83 16 24 C -0.11 -2.78 7.92 22.27 0.18 -2.61 16 25 C -0.14 -2.90 10.05 22.27 0.22 -2.68 16 26 C -0.12 -2.03 10.05 22.27 0.22 -1.81 16 27 C -0.12 -1.71 10.05 22.27 0.22 -1.49 16 28 C -0.11 -1.75 8.88 22.27 0.20 -1.55 16 29 H 0.04 1.13 8.14 -2.39 -0.02 1.11 16 30 H 0.10 1.70 8.14 -2.39 -0.02 1.68 16 31 H 0.06 1.34 7.22 -2.39 -0.02 1.33 16 32 H 0.07 2.36 8.07 -2.39 -0.02 2.35 16 33 H 0.10 2.33 6.44 -2.39 -0.02 2.32 16 34 H 0.02 1.16 8.07 -2.38 -0.02 1.14 16 35 H -0.01 -0.39 7.42 -2.39 -0.02 -0.40 16 36 H 0.27 15.50 8.31 -92.71 -0.77 14.73 16 37 H 0.12 3.06 4.93 -2.39 -0.01 3.05 16 38 H 0.09 2.06 7.09 -2.39 -0.02 2.04 16 39 H 0.07 2.02 5.96 -2.39 -0.01 2.01 16 40 H 0.05 1.72 6.40 -2.38 -0.02 1.71 16 41 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 42 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 43 H 0.07 1.66 6.04 -2.38 -0.01 1.65 16 44 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 45 H 0.05 0.82 7.02 -2.39 -0.02 0.80 16 46 H 0.40 3.33 9.12 -74.06 -0.68 2.65 16 47 H 0.10 3.21 7.73 -2.91 -0.02 3.19 16 48 H 0.12 2.40 8.06 -2.91 -0.02 2.37 16 49 H 0.14 1.61 8.06 -2.91 -0.02 1.59 16 50 H 0.15 1.21 8.06 -2.91 -0.02 1.19 16 51 H 0.14 1.41 8.04 -2.91 -0.02 1.39 16 Total: -1.00 -81.76 406.31 1.35 -80.41 By element: Atomic # 1 Polarization: 18.95 SS G_CDS: 0.24 Total: 19.19 kcal Atomic # 6 Polarization: -5.16 SS G_CDS: 6.18 Total: 1.02 kcal Atomic # 7 Polarization: -99.79 SS G_CDS: -5.02 Total: -104.82 kcal Atomic # 8 Polarization: -42.26 SS G_CDS: -2.08 Total: -44.34 kcal Atomic # 14 Polarization: 46.50 SS G_CDS: 2.03 Total: 48.53 kcal Total: -81.76 1.35 -80.41 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075899329.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.340 kcal (2) G-P(sol) polarization free energy of solvation -81.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.410 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds