Wall clock time and date at job start Tue Mar 31 2020 18:43:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46498 * 109.47682 * 2 1 4 4 C 1.46499 * 119.99749 * 269.99924 * 3 2 1 5 5 C 1.50698 * 109.47074 * 269.99184 * 4 3 2 6 6 H 1.08002 * 119.99853 * 0.02562 * 5 4 3 7 7 C 1.37877 * 119.99920 * 180.02562 * 5 4 3 8 8 N 1.31520 * 120.00044 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 120.00030 * 180.02562 * 7 5 4 10 10 H 1.48504 * 109.47251 * 59.99609 * 9 7 5 11 11 H 1.48500 * 109.47475 * 180.02562 * 9 7 5 12 12 H 1.48506 * 109.47165 * 299.99943 * 9 7 5 13 13 C 1.34778 * 120.00297 * 89.99190 * 3 2 1 14 14 O 1.21275 * 120.00372 * 180.02562 * 13 3 2 15 15 C 1.50702 * 119.99701 * 0.02562 * 13 3 2 16 16 N 1.46901 * 109.46878 * 179.97438 * 15 13 3 17 17 C 1.46903 * 111.00070 * 293.95132 * 16 15 13 18 18 C 1.46898 * 110.99919 * 169.99892 * 16 15 13 19 19 C 1.53000 * 109.47357 * 189.99710 * 18 16 15 20 20 O 1.42903 * 109.46726 * 64.99864 * 19 18 16 21 21 C 1.35904 * 116.99628 * 180.02562 * 20 19 18 22 22 C 1.38758 * 120.05922 * 359.72826 * 21 20 19 23 23 C 1.38121 * 119.94303 * 179.69478 * 22 21 20 24 24 C 1.38284 * 120.05670 * 0.60266 * 23 22 21 25 25 C 1.38245 * 120.11162 * 359.67148 * 24 23 22 26 26 C 1.50704 * 119.97222 * 179.97438 * 25 24 23 27 27 C 1.38173 * 120.05607 * 0.02881 * 25 24 23 28 28 H 1.09000 * 109.47419 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47506 * 300.00274 * 1 2 3 30 30 H 1.09002 * 109.46752 * 60.00195 * 1 2 3 31 31 H 1.09005 * 109.47552 * 239.99385 * 2 1 3 32 32 H 1.09002 * 109.46752 * 119.99805 * 2 1 3 33 33 H 1.08994 * 109.47075 * 29.99465 * 4 3 2 34 34 H 1.09008 * 109.47080 * 149.99220 * 4 3 2 35 35 H 0.96999 * 119.99264 * 180.02562 * 8 7 5 36 36 H 1.09000 * 109.47594 * 59.99769 * 15 13 3 37 37 H 1.08997 * 109.47104 * 299.99760 * 15 13 3 38 38 H 1.09003 * 109.46747 * 296.04763 * 17 16 15 39 39 H 1.09001 * 109.46639 * 56.04166 * 17 16 15 40 40 H 1.09000 * 109.47330 * 176.04762 * 17 16 15 41 41 H 1.09002 * 109.47351 * 70.00014 * 18 16 15 42 42 H 1.09002 * 109.47308 * 309.99903 * 18 16 15 43 43 H 1.09002 * 109.47398 * 185.00108 * 19 18 16 44 44 H 1.09001 * 109.47194 * 305.00288 * 19 18 16 45 45 H 1.08003 * 120.02200 * 359.97438 * 22 21 20 46 46 H 1.07998 * 119.96674 * 180.29445 * 23 22 21 47 47 H 1.08003 * 119.94493 * 179.69558 * 24 23 22 48 48 H 1.08989 * 109.47387 * 270.02488 * 26 25 24 49 49 H 1.09002 * 109.46581 * 30.02752 * 26 25 24 50 50 H 1.08999 * 109.46711 * 150.02339 * 26 25 24 51 51 H 1.07998 * 120.02728 * 180.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2627 2.0717 -1.2688 5 6 3.6860 1.8349 -1.7037 6 1 4.3428 1.2301 -1.0960 7 6 4.1496 2.3903 -2.8774 8 7 3.3499 3.1271 -3.6171 9 14 5.9137 2.0962 -3.4168 10 1 6.1405 0.6394 -3.5951 11 1 6.1617 2.7972 -4.7022 12 1 6.8415 2.6185 -2.3817 13 6 2.2430 2.0166 1.1672 14 8 2.6469 3.1601 1.1672 15 6 1.9921 1.3061 2.4723 16 7 2.3108 2.2060 3.5888 17 6 3.7476 2.5096 3.6268 18 6 1.8584 1.6400 4.8667 19 6 1.9778 2.6991 5.9644 20 8 1.0787 3.7750 5.6880 21 6 1.0605 4.8065 6.5726 22 6 1.8869 4.7811 7.6870 23 6 1.8711 5.8336 8.5812 24 6 1.0236 6.9064 8.3733 25 6 0.1951 6.9315 7.2668 26 6 -0.7276 8.1019 7.0436 27 6 0.2117 5.8839 6.3660 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.8934 -0.5139 -0.8899 32 1 1.8932 -0.5138 0.8900 33 1 1.5819 1.6875 -2.0284 34 1 2.0956 3.1410 -1.1385 35 1 3.6761 3.5175 -4.4430 36 1 2.6225 0.4187 2.5300 37 1 0.9443 1.0116 2.5301 38 1 4.3072 1.5946 3.8215 39 1 4.0560 2.9271 2.6683 40 1 3.9455 3.2320 4.4186 41 1 2.4774 0.7801 5.1227 42 1 0.8186 1.3253 4.7770 43 1 1.7270 2.2543 6.9274 44 1 2.9994 3.0779 5.9942 45 1 2.5452 3.9410 7.8525 46 1 2.5175 5.8164 9.4461 47 1 1.0091 7.7261 9.0763 48 1 -1.6841 7.9082 7.5290 49 1 -0.2814 9.0021 7.4662 50 1 -0.8847 8.2418 5.9741 51 1 -0.4354 5.9042 5.5016 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000076752356.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:43:28 Heat of formation + Delta-G solvation = -39.140913 kcal Electronic energy + Delta-G solvation = -28732.053126 eV Core-core repulsion = 24825.161120 eV Total energy + Delta-G solvation = -3906.892006 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -40.26685 -39.29358 -37.97330 -36.53437 -35.10423 -32.78740 -32.65368 -31.14535 -30.06116 -29.44814 -28.25463 -27.16718 -26.66725 -24.89021 -22.99884 -22.66620 -22.55834 -21.64610 -20.45697 -18.25632 -17.95191 -16.79049 -16.44275 -16.29951 -16.13673 -15.87072 -15.49330 -15.24966 -14.56832 -14.49770 -14.28817 -14.08835 -13.75021 -13.70893 -13.35677 -13.31118 -13.08076 -12.84240 -12.48820 -12.43716 -12.29037 -12.07803 -11.92478 -11.79585 -11.65579 -11.53850 -11.38950 -11.24371 -11.10933 -10.91439 -10.87814 -10.73196 -10.66835 -10.48816 -10.08608 -9.61359 -8.92323 -8.83565 -8.40607 -8.24958 -8.09796 -7.59035 -6.01403 -4.06132 1.17949 1.35377 3.12188 3.32433 3.37254 3.39051 3.51762 3.61997 3.65374 4.24624 4.47318 4.59833 4.64404 4.80738 4.86902 4.90918 5.06496 5.08961 5.11762 5.17772 5.27730 5.31363 5.33058 5.37385 5.40759 5.41591 5.51666 5.54459 5.58330 5.65523 5.71523 5.75387 5.77652 5.85038 5.94020 6.05480 6.21164 6.25767 6.28852 6.40636 6.45179 6.51224 6.66741 6.95121 7.13633 7.19475 7.41930 7.50836 7.61420 7.95621 8.27366 8.50096 8.94072 9.20000 9.58883 11.06547 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.013829 B = 0.002327 C = 0.002231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2024.228815 B =12031.448462 C =12547.984003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.107 3.893 3 N -0.600 5.600 4 C 0.248 3.752 5 C -0.525 4.525 6 H 0.055 0.945 7 C 0.061 3.939 8 N -0.895 5.895 9 Si 0.897 3.103 10 H -0.278 1.278 11 H -0.286 1.286 12 H -0.277 1.277 13 C 0.507 3.493 14 O -0.522 6.522 15 C 0.037 3.963 16 N -0.516 5.516 17 C 0.016 3.984 18 C 0.055 3.945 19 C 0.065 3.935 20 O -0.292 6.292 21 C 0.141 3.859 22 C -0.220 4.220 23 C -0.078 4.078 24 C -0.166 4.166 25 C -0.048 4.048 26 C -0.115 4.115 27 C -0.153 4.153 28 H 0.058 0.942 29 H 0.051 0.949 30 H 0.061 0.939 31 H 0.081 0.919 32 H 0.061 0.939 33 H 0.031 0.969 34 H 0.043 0.957 35 H 0.263 0.737 36 H 0.055 0.945 37 H 0.096 0.904 38 H 0.017 0.983 39 H 0.097 0.903 40 H 0.063 0.937 41 H 0.055 0.945 42 H 0.086 0.914 43 H 0.063 0.937 44 H 0.065 0.935 45 H 0.124 0.876 46 H 0.121 0.879 47 H 0.120 0.880 48 H 0.071 0.929 49 H 0.067 0.933 50 H 0.070 0.930 51 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.873 -1.752 23.865 24.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.017 4.017 3 N -0.334 5.334 4 C 0.129 3.871 5 C -0.564 4.564 6 H 0.073 0.927 7 C -0.141 4.141 8 N -0.534 5.534 9 Si 0.725 3.275 10 H -0.203 1.203 11 H -0.212 1.212 12 H -0.202 1.202 13 C 0.293 3.707 14 O -0.398 6.398 15 C -0.094 4.094 16 N -0.240 5.240 17 C -0.131 4.131 18 C -0.073 4.073 19 C -0.010 4.010 20 O -0.205 6.205 21 C 0.095 3.905 22 C -0.239 4.239 23 C -0.096 4.096 24 C -0.185 4.185 25 C -0.048 4.048 26 C -0.172 4.172 27 C -0.172 4.172 28 H 0.077 0.923 29 H 0.070 0.930 30 H 0.080 0.920 31 H 0.100 0.900 32 H 0.080 0.920 33 H 0.049 0.951 34 H 0.061 0.939 35 H 0.073 0.927 36 H 0.073 0.927 37 H 0.114 0.886 38 H 0.036 0.964 39 H 0.115 0.885 40 H 0.081 0.919 41 H 0.073 0.927 42 H 0.104 0.896 43 H 0.082 0.918 44 H 0.083 0.917 45 H 0.142 0.858 46 H 0.139 0.861 47 H 0.138 0.862 48 H 0.090 0.910 49 H 0.086 0.914 50 H 0.089 0.911 51 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -7.023 -0.617 23.399 24.438 hybrid contribution 1.644 -1.165 -0.088 2.017 sum -5.379 -1.782 23.311 23.990 Atomic orbital electron populations 1.22227 0.96831 1.01293 1.02426 1.21391 0.93501 0.84386 1.02449 1.48261 1.64242 1.13152 1.07702 1.19233 0.96076 0.93694 0.78112 1.21390 0.96973 1.31816 1.06215 0.92679 1.24934 0.97758 0.94978 0.96444 1.69928 1.35689 1.33372 1.14365 0.86580 0.84931 0.78171 0.77837 1.20320 1.21184 1.20232 1.20085 0.78897 0.87088 0.84673 1.90643 1.44727 1.17668 1.86717 1.22090 1.02212 0.94085 0.90981 1.61572 1.17669 1.43672 1.01067 1.22632 0.86207 0.99236 1.05054 1.22187 1.01925 0.93982 0.89231 1.22875 0.93446 0.86994 0.97728 1.86239 1.59583 1.28148 1.46519 1.19076 0.94310 0.88466 0.88616 1.21226 1.03876 1.01710 0.97096 1.20879 0.97513 0.93046 0.98168 1.20886 0.99109 0.99656 0.98820 1.19712 0.96284 0.95100 0.93749 1.20814 0.98215 0.95297 1.02865 1.20347 1.01994 0.93051 1.01820 0.92281 0.93029 0.91993 0.90032 0.92047 0.95128 0.93884 0.92693 0.92668 0.88582 0.96424 0.88466 0.91877 0.92750 0.89596 0.91842 0.91701 0.85786 0.86076 0.86216 0.90986 0.91389 0.91138 0.85112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.28 10.24 37.16 0.38 -1.89 16 2 C 0.11 1.71 5.93 -4.04 -0.02 1.68 16 3 N -0.60 -12.74 2.46 -175.06 -0.43 -13.17 16 4 C 0.25 6.54 5.16 -5.19 -0.03 6.52 16 5 C -0.53 -14.95 9.39 -34.44 -0.32 -15.27 16 6 H 0.05 1.56 7.81 -52.49 -0.41 1.15 16 7 C 0.06 1.75 5.46 -17.82 -0.10 1.66 16 8 N -0.89 -26.85 13.29 55.43 0.74 -26.11 16 9 Si 0.90 21.99 29.54 -169.99 -5.02 16.97 16 10 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 11 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 12 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 13 C 0.51 10.68 7.36 -10.98 -0.08 10.60 16 14 O -0.52 -13.37 13.91 5.56 0.08 -13.29 16 15 C 0.04 0.57 4.00 -4.97 -0.02 0.55 16 16 N -0.52 -7.85 4.45 -244.36 -1.09 -8.93 16 17 C 0.02 0.25 8.97 60.07 0.54 0.79 16 18 C 0.05 0.60 5.34 -3.82 -0.02 0.58 16 19 C 0.07 0.69 4.80 37.16 0.18 0.87 16 20 O -0.29 -4.03 10.08 -19.44 -0.20 -4.23 16 21 C 0.14 1.82 6.69 -39.22 -0.26 1.55 16 22 C -0.22 -2.38 9.04 -39.43 -0.36 -2.74 16 23 C -0.08 -0.75 10.04 -39.61 -0.40 -1.15 16 24 C -0.17 -1.61 9.70 -39.56 -0.38 -1.99 16 25 C -0.05 -0.51 5.88 -104.64 -0.62 -1.12 16 26 C -0.12 -0.90 10.01 36.01 0.36 -0.54 16 27 C -0.15 -1.90 9.64 -39.43 -0.38 -2.28 16 28 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.05 0.66 7.22 -51.93 -0.38 0.29 16 30 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.08 1.36 8.07 -51.93 -0.42 0.94 16 32 H 0.06 0.81 6.44 -51.93 -0.33 0.47 16 33 H 0.03 0.82 8.07 -51.93 -0.42 0.40 16 34 H 0.04 1.29 7.42 -51.92 -0.39 0.91 16 35 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 36 H 0.06 0.75 7.38 -51.93 -0.38 0.37 16 37 H 0.10 1.27 6.98 -51.93 -0.36 0.91 16 38 H 0.02 0.23 8.14 -51.93 -0.42 -0.19 16 39 H 0.10 1.89 5.83 -51.93 -0.30 1.59 16 40 H 0.06 0.88 6.37 -51.93 -0.33 0.55 16 41 H 0.05 0.48 8.12 -51.93 -0.42 0.06 16 42 H 0.09 0.88 7.93 -51.93 -0.41 0.47 16 43 H 0.06 0.51 7.65 -51.93 -0.40 0.12 16 44 H 0.06 0.68 5.87 -51.93 -0.30 0.38 16 45 H 0.12 1.11 6.30 -52.48 -0.33 0.78 16 46 H 0.12 0.87 8.06 -52.49 -0.42 0.44 16 47 H 0.12 0.89 8.06 -52.48 -0.42 0.47 16 48 H 0.07 0.48 8.14 -51.94 -0.42 0.06 16 49 H 0.07 0.45 8.09 -51.93 -0.42 0.03 16 50 H 0.07 0.55 8.08 -51.93 -0.42 0.13 16 51 H 0.13 1.59 8.06 -52.49 -0.42 1.17 16 LS Contribution 411.37 15.07 6.20 6.20 Total: -1.00 -34.74 411.37 -9.77 -44.51 By element: Atomic # 1 Polarization: 8.75 SS G_CDS: -8.52 Total: 0.23 kcal Atomic # 6 Polarization: -0.65 SS G_CDS: -1.53 Total: -2.18 kcal Atomic # 7 Polarization: -47.44 SS G_CDS: -0.78 Total: -48.22 kcal Atomic # 8 Polarization: -17.40 SS G_CDS: -0.12 Total: -17.52 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -34.74 -9.77 -44.51 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076752356.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.371 kcal (2) G-P(sol) polarization free energy of solvation -34.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.512 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds