Wall clock time and date at job start Tue Mar 31 2020 18:43:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46498 * 109.47682 * 2 1 4 4 C 1.46499 * 119.99749 * 269.99924 * 3 2 1 5 5 C 1.50698 * 109.47074 * 269.99184 * 4 3 2 6 6 H 1.08002 * 119.99853 * 0.02562 * 5 4 3 7 7 C 1.37877 * 119.99920 * 180.02562 * 5 4 3 8 8 N 1.31520 * 120.00044 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 120.00030 * 180.02562 * 7 5 4 10 10 H 1.48504 * 109.47251 * 59.99609 * 9 7 5 11 11 H 1.48500 * 109.47475 * 180.02562 * 9 7 5 12 12 H 1.48506 * 109.47165 * 299.99943 * 9 7 5 13 13 C 1.34778 * 120.00297 * 89.99190 * 3 2 1 14 14 O 1.21275 * 120.00372 * 180.02562 * 13 3 2 15 15 C 1.50702 * 119.99701 * 0.02562 * 13 3 2 16 16 N 1.46901 * 109.46878 * 179.97438 * 15 13 3 17 17 C 1.46903 * 111.00070 * 293.95132 * 16 15 13 18 18 C 1.46898 * 110.99919 * 169.99892 * 16 15 13 19 19 C 1.53000 * 109.47357 * 189.99710 * 18 16 15 20 20 O 1.42903 * 109.46726 * 64.99864 * 19 18 16 21 21 C 1.35904 * 116.99628 * 180.02562 * 20 19 18 22 22 C 1.38758 * 120.05922 * 359.72826 * 21 20 19 23 23 C 1.38121 * 119.94303 * 179.69478 * 22 21 20 24 24 C 1.38284 * 120.05670 * 0.60266 * 23 22 21 25 25 C 1.38245 * 120.11162 * 359.67148 * 24 23 22 26 26 C 1.50704 * 119.97222 * 179.97438 * 25 24 23 27 27 C 1.38173 * 120.05607 * 0.02881 * 25 24 23 28 28 H 1.09000 * 109.47419 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47506 * 300.00274 * 1 2 3 30 30 H 1.09002 * 109.46752 * 60.00195 * 1 2 3 31 31 H 1.09005 * 109.47552 * 239.99385 * 2 1 3 32 32 H 1.09002 * 109.46752 * 119.99805 * 2 1 3 33 33 H 1.08994 * 109.47075 * 29.99465 * 4 3 2 34 34 H 1.09008 * 109.47080 * 149.99220 * 4 3 2 35 35 H 0.96999 * 119.99264 * 180.02562 * 8 7 5 36 36 H 1.09000 * 109.47594 * 59.99769 * 15 13 3 37 37 H 1.08997 * 109.47104 * 299.99760 * 15 13 3 38 38 H 1.09003 * 109.46747 * 296.04763 * 17 16 15 39 39 H 1.09001 * 109.46639 * 56.04166 * 17 16 15 40 40 H 1.09000 * 109.47330 * 176.04762 * 17 16 15 41 41 H 1.09002 * 109.47351 * 70.00014 * 18 16 15 42 42 H 1.09002 * 109.47308 * 309.99903 * 18 16 15 43 43 H 1.09002 * 109.47398 * 185.00108 * 19 18 16 44 44 H 1.09001 * 109.47194 * 305.00288 * 19 18 16 45 45 H 1.08003 * 120.02200 * 359.97438 * 22 21 20 46 46 H 1.07998 * 119.96674 * 180.29445 * 23 22 21 47 47 H 1.08003 * 119.94493 * 179.69558 * 24 23 22 48 48 H 1.08989 * 109.47387 * 270.02488 * 26 25 24 49 49 H 1.09002 * 109.46581 * 30.02752 * 26 25 24 50 50 H 1.08999 * 109.46711 * 150.02339 * 26 25 24 51 51 H 1.07998 * 120.02728 * 180.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2627 2.0717 -1.2688 5 6 3.6860 1.8349 -1.7037 6 1 4.3428 1.2301 -1.0960 7 6 4.1496 2.3903 -2.8774 8 7 3.3499 3.1271 -3.6171 9 14 5.9137 2.0962 -3.4168 10 1 6.1405 0.6394 -3.5951 11 1 6.1617 2.7972 -4.7022 12 1 6.8415 2.6185 -2.3817 13 6 2.2430 2.0166 1.1672 14 8 2.6469 3.1601 1.1672 15 6 1.9921 1.3061 2.4723 16 7 2.3108 2.2060 3.5888 17 6 3.7476 2.5096 3.6268 18 6 1.8584 1.6400 4.8667 19 6 1.9778 2.6991 5.9644 20 8 1.0787 3.7750 5.6880 21 6 1.0605 4.8065 6.5726 22 6 1.8869 4.7811 7.6870 23 6 1.8711 5.8336 8.5812 24 6 1.0236 6.9064 8.3733 25 6 0.1951 6.9315 7.2668 26 6 -0.7276 8.1019 7.0436 27 6 0.2117 5.8839 6.3660 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.8934 -0.5139 -0.8899 32 1 1.8932 -0.5138 0.8900 33 1 1.5819 1.6875 -2.0284 34 1 2.0956 3.1410 -1.1385 35 1 3.6761 3.5175 -4.4430 36 1 2.6225 0.4187 2.5300 37 1 0.9443 1.0116 2.5301 38 1 4.3072 1.5946 3.8215 39 1 4.0560 2.9271 2.6683 40 1 3.9455 3.2320 4.4186 41 1 2.4774 0.7801 5.1227 42 1 0.8186 1.3253 4.7770 43 1 1.7270 2.2543 6.9274 44 1 2.9994 3.0779 5.9942 45 1 2.5452 3.9410 7.8525 46 1 2.5175 5.8164 9.4461 47 1 1.0091 7.7261 9.0763 48 1 -1.6841 7.9082 7.5290 49 1 -0.2814 9.0021 7.4662 50 1 -0.8847 8.2418 5.9741 51 1 -0.4354 5.9042 5.5016 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000076752356.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:43:26 Heat of formation + Delta-G solvation = -61.536039 kcal Electronic energy + Delta-G solvation = -28733.024251 eV Core-core repulsion = 24825.161120 eV Total energy + Delta-G solvation = -3907.863131 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.14556 -40.78566 -38.90000 -37.69279 -36.74581 -34.90704 -33.38419 -32.11278 -31.56433 -30.47707 -29.59161 -28.36073 -27.86323 -26.17110 -24.67305 -23.95640 -23.43039 -22.74345 -21.32472 -19.83954 -18.77803 -18.61920 -18.06996 -17.46169 -17.04071 -16.99879 -16.78408 -16.51019 -16.22459 -15.64269 -15.48072 -15.13811 -15.00632 -14.63836 -14.45668 -14.37369 -14.19542 -14.11009 -13.87622 -13.57156 -13.40450 -13.28306 -13.14279 -12.96456 -12.86372 -12.79772 -12.63126 -12.52627 -12.48670 -12.38268 -12.25053 -12.13230 -11.83125 -11.71838 -11.67952 -11.55363 -10.64575 -10.48172 -9.71588 -9.39317 -9.20929 -9.07147 -8.21974 -6.37252 0.38916 0.53940 1.34792 1.39595 1.46811 1.90700 2.23436 2.32557 2.41005 2.83325 3.00724 3.07027 3.73069 3.81120 3.93455 3.99683 4.08499 4.14754 4.17677 4.24011 4.34657 4.34870 4.39673 4.43520 4.45888 4.51179 4.53367 4.61331 4.63968 4.69555 4.81393 4.82175 4.89110 4.95004 5.00107 5.04061 5.06369 5.15073 5.23049 5.24737 5.40419 5.41279 5.51619 5.58936 5.67938 5.85701 5.91518 5.94726 6.07580 6.13556 6.58778 6.71213 6.86603 7.29326 7.58023 8.84837 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.013829 B = 0.002327 C = 0.002231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2024.228815 B =12031.448462 C =12547.984003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.100 3.900 3 N -0.607 5.607 4 C 0.264 3.736 5 C -0.540 4.540 6 H 0.053 0.947 7 C 0.005 3.995 8 N -0.930 5.930 9 Si 0.968 3.032 10 H -0.258 1.258 11 H -0.279 1.279 12 H -0.278 1.278 13 C 0.494 3.506 14 O -0.581 6.581 15 C 0.054 3.946 16 N -0.545 5.545 17 C 0.025 3.975 18 C 0.057 3.943 19 C 0.061 3.939 20 O -0.322 6.322 21 C 0.118 3.882 22 C -0.226 4.226 23 C -0.079 4.079 24 C -0.170 4.170 25 C -0.056 4.056 26 C -0.114 4.114 27 C -0.183 4.183 28 H 0.097 0.903 29 H 0.059 0.941 30 H 0.035 0.965 31 H 0.071 0.929 32 H 0.101 0.899 33 H 0.019 0.981 34 H -0.009 1.009 35 H 0.267 0.733 36 H 0.085 0.915 37 H 0.124 0.876 38 H 0.041 0.959 39 H 0.047 0.953 40 H 0.070 0.930 41 H 0.087 0.913 42 H 0.096 0.904 43 H 0.093 0.907 44 H 0.062 0.938 45 H 0.142 0.858 46 H 0.150 0.850 47 H 0.145 0.855 48 H 0.084 0.916 49 H 0.083 0.917 50 H 0.063 0.937 51 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.239 -3.955 26.705 27.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.022 4.022 3 N -0.339 5.339 4 C 0.143 3.857 5 C -0.578 4.578 6 H 0.071 0.929 7 C -0.194 4.194 8 N -0.570 5.570 9 Si 0.792 3.208 10 H -0.183 1.183 11 H -0.204 1.204 12 H -0.204 1.204 13 C 0.283 3.717 14 O -0.461 6.461 15 C -0.077 4.077 16 N -0.270 5.270 17 C -0.123 4.123 18 C -0.070 4.070 19 C -0.014 4.014 20 O -0.235 6.235 21 C 0.072 3.928 22 C -0.245 4.245 23 C -0.097 4.097 24 C -0.189 4.189 25 C -0.056 4.056 26 C -0.171 4.171 27 C -0.202 4.202 28 H 0.115 0.885 29 H 0.078 0.922 30 H 0.054 0.946 31 H 0.089 0.911 32 H 0.119 0.881 33 H 0.037 0.963 34 H 0.009 0.991 35 H 0.075 0.925 36 H 0.103 0.897 37 H 0.142 0.858 38 H 0.060 0.940 39 H 0.066 0.934 40 H 0.089 0.911 41 H 0.105 0.895 42 H 0.114 0.886 43 H 0.111 0.889 44 H 0.081 0.919 45 H 0.160 0.840 46 H 0.168 0.832 47 H 0.163 0.837 48 H 0.103 0.897 49 H 0.102 0.898 50 H 0.082 0.918 51 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -6.417 -2.878 26.266 27.191 hybrid contribution 1.394 -0.435 -0.922 1.727 sum -5.023 -3.313 25.344 26.048 Atomic orbital electron populations 1.22157 0.94713 1.03472 1.01577 1.21738 0.95216 0.81344 1.03883 1.48303 1.64360 1.15125 1.06134 1.18639 0.95234 0.91313 0.80531 1.21666 0.97820 1.31890 1.06461 0.92856 1.25898 1.02480 0.94507 0.96491 1.70062 1.37885 1.34212 1.14826 0.85464 0.78917 0.79080 0.77320 1.18271 1.20395 1.20362 1.21252 0.77362 0.86706 0.86392 1.90618 1.47191 1.20525 1.87729 1.21990 1.04347 0.93839 0.87505 1.61460 1.17466 1.45138 1.02915 1.22426 0.87057 1.00291 1.02497 1.22322 1.02916 0.94784 0.86950 1.23076 0.92950 0.86405 0.99014 1.86193 1.60632 1.29131 1.47579 1.19334 0.95364 0.88600 0.89499 1.21469 1.03666 1.02785 0.96552 1.21290 0.97429 0.92386 0.98606 1.21256 0.98423 1.00435 0.98736 1.20044 0.96759 0.95164 0.93636 1.20863 0.98456 0.94977 1.02793 1.20505 1.02902 0.94377 1.02423 0.88476 0.92199 0.94568 0.91075 0.88066 0.96256 0.99058 0.92451 0.89732 0.85837 0.94026 0.93395 0.91138 0.89509 0.88609 0.88917 0.91943 0.84036 0.83212 0.83706 0.89742 0.89791 0.91765 0.86503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.02 10.24 71.98 0.74 -3.29 16 2 C 0.10 3.05 5.93 86.38 0.51 3.57 16 3 N -0.61 -26.36 2.46 -826.16 -2.03 -28.39 16 4 C 0.26 14.78 5.16 85.63 0.44 15.22 16 5 C -0.54 -31.81 9.39 25.60 0.24 -31.57 16 6 H 0.05 3.08 7.81 -2.91 -0.02 3.06 16 7 C 0.00 0.29 5.46 84.65 0.46 0.75 16 8 N -0.93 -57.81 13.29 21.45 0.28 -57.52 16 9 Si 0.97 45.71 29.54 68.60 2.03 47.74 16 10 H -0.26 -11.34 7.11 99.48 0.71 -10.63 16 11 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 12 H -0.28 -13.11 7.11 99.48 0.71 -12.41 16 13 C 0.49 21.30 7.36 87.66 0.65 21.95 16 14 O -0.58 -31.68 13.91 -3.01 -0.04 -31.72 16 15 C 0.05 1.54 4.00 85.56 0.34 1.88 16 16 N -0.54 -15.91 4.45 -927.03 -4.12 -20.03 16 17 C 0.03 0.77 8.97 127.69 1.15 1.91 16 18 C 0.06 1.08 5.34 86.30 0.46 1.54 16 19 C 0.06 1.17 4.80 71.98 0.35 1.52 16 20 O -0.32 -8.89 10.08 -92.47 -0.93 -9.82 16 21 C 0.12 3.05 6.69 22.51 0.15 3.20 16 22 C -0.23 -4.59 9.04 22.37 0.20 -4.39 16 23 C -0.08 -1.36 10.04 22.25 0.22 -1.14 16 24 C -0.17 -2.99 9.70 22.28 0.22 -2.78 16 25 C -0.06 -1.16 5.88 -19.88 -0.12 -1.27 16 26 C -0.11 -1.72 10.01 71.24 0.71 -1.01 16 27 C -0.18 -4.74 9.64 22.37 0.22 -4.52 16 28 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16 29 H 0.06 1.40 7.22 -2.39 -0.02 1.38 16 30 H 0.04 1.08 8.14 -2.39 -0.02 1.06 16 31 H 0.07 2.31 8.07 -2.38 -0.02 2.29 16 32 H 0.10 2.28 6.44 -2.39 -0.02 2.27 16 33 H 0.02 1.10 8.07 -2.39 -0.02 1.08 16 34 H -0.01 -0.57 7.42 -2.38 -0.02 -0.59 16 35 H 0.27 15.55 8.31 -92.71 -0.77 14.78 16 36 H 0.09 1.96 7.38 -2.39 -0.02 1.94 16 37 H 0.12 2.86 6.98 -2.39 -0.02 2.85 16 38 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 39 H 0.05 1.95 5.83 -2.39 -0.01 1.93 16 40 H 0.07 1.96 6.37 -2.39 -0.02 1.95 16 41 H 0.09 1.12 8.12 -2.39 -0.02 1.10 16 42 H 0.10 1.64 7.93 -2.39 -0.02 1.62 16 43 H 0.09 1.22 7.65 -2.39 -0.02 1.21 16 44 H 0.06 1.21 5.87 -2.39 -0.01 1.20 16 45 H 0.14 2.23 6.30 -2.91 -0.02 2.21 16 46 H 0.15 1.64 8.06 -2.91 -0.02 1.62 16 47 H 0.15 1.74 8.06 -2.91 -0.02 1.72 16 48 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 49 H 0.08 0.98 8.09 -2.39 -0.02 0.96 16 50 H 0.06 1.03 8.08 -2.39 -0.02 1.01 16 51 H 0.12 3.15 8.06 -2.91 -0.02 3.13 16 Total: -1.00 -82.76 411.37 3.02 -79.73 By element: Atomic # 1 Polarization: 17.53 SS G_CDS: 0.90 Total: 18.43 kcal Atomic # 6 Polarization: -5.36 SS G_CDS: 6.94 Total: 1.58 kcal Atomic # 7 Polarization: -100.08 SS G_CDS: -5.87 Total: -105.94 kcal Atomic # 8 Polarization: -40.56 SS G_CDS: -0.97 Total: -41.54 kcal Atomic # 14 Polarization: 45.71 SS G_CDS: 2.03 Total: 47.74 kcal Total: -82.76 3.02 -79.73 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076752356.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.199 kcal (2) G-P(sol) polarization free energy of solvation -82.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.735 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds