Wall clock time and date at job start Tue Mar 31 2020 18:43:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46507 * 109.47069 * 2 1 4 4 C 1.46500 * 119.99922 * 269.99987 * 3 2 1 5 5 C 1.50694 * 109.47303 * 270.00022 * 4 3 2 6 6 H 1.08006 * 120.00092 * 0.02562 * 5 4 3 7 7 C 1.37880 * 120.00360 * 180.02562 * 5 4 3 8 8 N 1.31516 * 119.99521 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 120.00153 * 179.97438 * 7 5 4 10 10 H 1.48499 * 109.47194 * 0.02562 * 9 7 5 11 11 H 1.48505 * 109.46891 * 120.00431 * 9 7 5 12 12 H 1.48499 * 109.47272 * 240.00144 * 9 7 5 13 13 C 1.34771 * 120.00020 * 90.00077 * 3 2 1 14 14 O 1.21279 * 120.00326 * 180.02562 * 13 3 2 15 15 C 1.50710 * 119.99879 * 0.02562 * 13 3 2 16 16 N 1.46899 * 109.46940 * 180.02562 * 15 13 3 17 17 C 1.46900 * 111.00287 * 66.04352 * 16 15 13 18 18 C 1.46900 * 110.99646 * 190.00381 * 16 15 13 19 19 H 1.09001 * 109.47076 * 301.00537 * 18 16 15 20 20 C 1.52998 * 109.46814 * 181.01132 * 18 16 15 21 21 C 1.50702 * 109.47618 * 61.00923 * 18 16 15 22 22 C 1.38263 * 119.94153 * 45.58526 * 21 18 16 23 23 C 1.38148 * 120.05344 * 179.72483 * 22 21 18 24 24 C 1.38727 * 119.94097 * 0.55168 * 23 22 21 25 25 O 1.35898 * 120.05452 * 179.74683 * 24 23 22 26 26 C 1.42898 * 117.00257 * 359.97438 * 25 24 23 27 27 C 1.38737 * 119.89208 * 359.72530 * 24 23 22 28 28 C 1.38143 * 119.93972 * 359.97438 * 27 24 23 29 29 H 1.08996 * 109.47365 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47053 * 300.00116 * 1 2 3 31 31 H 1.09000 * 109.47292 * 59.99848 * 1 2 3 32 32 H 1.09002 * 109.47235 * 240.00519 * 2 1 3 33 33 H 1.09000 * 109.47292 * 120.00152 * 2 1 3 34 34 H 1.09005 * 109.47038 * 30.00322 * 4 3 2 35 35 H 1.09006 * 109.46909 * 149.99811 * 4 3 2 36 36 H 0.97004 * 119.99959 * 179.97438 * 8 7 5 37 37 H 1.09002 * 109.47143 * 59.99796 * 15 13 3 38 38 H 1.09003 * 109.46792 * 299.99936 * 15 13 3 39 39 H 1.08999 * 109.47026 * 190.86839 * 17 16 15 40 40 H 1.08993 * 109.47153 * 310.86796 * 17 16 15 41 41 H 1.08997 * 109.46930 * 70.86955 * 17 16 15 42 42 H 1.08999 * 109.47122 * 179.97438 * 20 18 16 43 43 H 1.09003 * 109.47507 * 299.99307 * 20 18 16 44 44 H 1.09004 * 109.47623 * 59.99604 * 20 18 16 45 45 H 1.08006 * 119.97457 * 0.02562 * 22 21 18 46 46 H 1.07996 * 120.02908 * 180.27536 * 23 22 21 47 47 H 1.08997 * 109.47064 * 300.00345 * 26 25 24 48 48 H 1.09001 * 109.47200 * 59.99783 * 26 25 24 49 49 H 1.08996 * 109.47610 * 179.97438 * 26 25 24 50 50 H 1.07998 * 120.03054 * 179.97438 * 27 24 23 51 51 H 1.08002 * 119.97016 * 180.02562 * 28 27 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2625 2.0719 -1.2687 5 6 3.6857 1.8351 -1.7038 6 1 4.3426 1.2303 -1.0962 7 6 4.1494 2.3906 -2.8775 8 7 3.3496 3.1275 -3.6171 9 14 5.9138 2.0976 -3.4164 10 1 6.6011 1.2415 -2.4165 11 1 5.9217 1.4192 -4.7374 12 1 6.6210 3.3989 -3.5241 13 6 2.2430 2.0166 1.1671 14 8 2.6468 3.1602 1.1672 15 6 1.9923 1.3059 2.4723 16 7 2.3099 2.2062 3.5889 17 6 1.3825 3.3448 3.6272 18 6 2.3069 1.4814 4.8666 19 1 1.3264 1.0332 5.0278 20 6 2.6161 2.4548 6.0057 21 6 3.3547 0.3988 4.8326 22 6 4.6198 0.6777 4.3495 23 6 5.5837 -0.3115 4.3225 24 6 5.2781 -1.5885 4.7701 25 8 6.2230 -2.5647 4.7398 26 6 7.5104 -2.2060 4.2339 27 6 4.0062 -1.8673 5.2491 28 6 3.0477 -0.8730 5.2797 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3634 0.5139 -0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 1.5816 1.6878 -2.0284 35 1 2.0955 3.1412 -1.1384 36 1 3.6758 3.5186 -4.4427 37 1 2.6229 0.4187 2.5298 38 1 0.9445 1.0114 2.5302 39 1 1.7504 4.0894 4.3332 40 1 1.3116 3.7892 2.6345 41 1 0.3975 3.0007 3.9424 42 1 2.6135 1.9172 6.9539 43 1 3.5966 2.9031 5.8447 44 1 1.8583 3.2379 6.0304 45 1 4.8560 1.6710 3.9973 46 1 6.5730 -0.0920 3.9492 47 1 7.4130 -1.8606 3.2047 48 1 7.9323 -1.4089 4.8461 49 1 8.1682 -3.0745 4.2653 50 1 3.7657 -2.8608 5.5977 51 1 2.0576 -1.0894 5.6529 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000079950348.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:43:54 Heat of formation + Delta-G solvation = -34.412938 kcal Electronic energy + Delta-G solvation = -30045.410066 eV Core-core repulsion = 26138.723081 eV Total energy + Delta-G solvation = -3906.686986 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -40.36807 -39.37242 -38.18197 -36.41404 -35.12283 -32.80191 -31.83824 -31.09187 -30.05428 -29.57963 -28.11357 -27.30433 -26.40911 -24.91899 -23.06693 -22.96239 -22.38262 -21.85532 -19.98354 -18.22891 -18.21407 -16.76315 -16.51806 -16.31934 -15.84006 -15.75686 -15.38456 -15.32773 -14.60348 -14.46425 -14.29044 -13.89336 -13.70029 -13.59668 -13.36301 -13.18549 -12.92212 -12.81831 -12.61291 -12.37761 -12.08450 -12.05685 -11.90004 -11.78875 -11.62562 -11.53826 -11.20177 -11.08145 -11.04036 -10.86876 -10.80878 -10.75313 -10.65134 -10.48243 -10.08883 -9.56086 -9.00842 -8.79700 -8.40638 -8.13906 -8.09879 -7.57542 -6.01185 -4.05110 1.30853 1.39853 3.16821 3.31114 3.38356 3.41874 3.52544 3.63217 3.79908 4.26948 4.48391 4.67639 4.77384 4.85097 4.98892 5.02680 5.11749 5.18322 5.21907 5.30253 5.32327 5.33527 5.36460 5.42469 5.45852 5.54147 5.61694 5.65509 5.68735 5.76278 5.79590 5.80683 5.84675 6.04609 6.06440 6.13405 6.22615 6.25701 6.35990 6.39270 6.50061 6.61956 6.71337 7.01754 7.19798 7.25001 7.31616 7.49305 7.62349 7.96326 8.28270 8.50680 8.95720 9.20464 9.60007 11.06914 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.008972 B = 0.003974 C = 0.003233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3120.014835 B = 7043.732475 C = 8657.307463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.107 3.893 3 N -0.599 5.599 4 C 0.248 3.752 5 C -0.521 4.521 6 H 0.057 0.943 7 C 0.060 3.940 8 N -0.896 5.896 9 Si 0.896 3.104 10 H -0.274 1.274 11 H -0.284 1.284 12 H -0.283 1.283 13 C 0.508 3.492 14 O -0.525 6.525 15 C 0.037 3.963 16 N -0.515 5.515 17 C 0.021 3.979 18 C 0.126 3.874 19 H 0.045 0.955 20 C -0.141 4.141 21 C -0.118 4.118 22 C -0.045 4.045 23 C -0.208 4.208 24 C 0.124 3.876 25 O -0.321 6.321 26 C 0.027 3.973 27 C -0.156 4.156 28 C -0.078 4.078 29 H 0.059 0.941 30 H 0.048 0.952 31 H 0.061 0.939 32 H 0.081 0.919 33 H 0.062 0.938 34 H 0.030 0.970 35 H 0.042 0.958 36 H 0.262 0.738 37 H 0.097 0.903 38 H 0.053 0.947 39 H 0.068 0.932 40 H 0.089 0.911 41 H 0.016 0.984 42 H 0.058 0.942 43 H 0.066 0.934 44 H 0.060 0.940 45 H 0.135 0.865 46 H 0.127 0.873 47 H 0.058 0.942 48 H 0.054 0.946 49 H 0.098 0.902 50 H 0.127 0.873 51 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.669 -9.858 19.358 21.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.017 4.017 3 N -0.332 5.332 4 C 0.129 3.871 5 C -0.560 4.560 6 H 0.075 0.925 7 C -0.141 4.141 8 N -0.535 5.535 9 Si 0.724 3.276 10 H -0.199 1.199 11 H -0.210 1.210 12 H -0.209 1.209 13 C 0.294 3.706 14 O -0.401 6.401 15 C -0.094 4.094 16 N -0.240 5.240 17 C -0.126 4.126 18 C 0.018 3.982 19 H 0.063 0.937 20 C -0.199 4.199 21 C -0.118 4.118 22 C -0.063 4.063 23 C -0.227 4.227 24 C 0.079 3.921 25 O -0.235 6.235 26 C -0.068 4.068 27 C -0.175 4.175 28 C -0.097 4.097 29 H 0.078 0.922 30 H 0.067 0.933 31 H 0.080 0.920 32 H 0.100 0.900 33 H 0.080 0.920 34 H 0.048 0.952 35 H 0.060 0.940 36 H 0.071 0.929 37 H 0.115 0.885 38 H 0.071 0.929 39 H 0.087 0.913 40 H 0.108 0.892 41 H 0.034 0.966 42 H 0.077 0.923 43 H 0.085 0.915 44 H 0.079 0.921 45 H 0.153 0.847 46 H 0.145 0.855 47 H 0.077 0.923 48 H 0.073 0.927 49 H 0.116 0.884 50 H 0.145 0.855 51 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -0.996 -9.138 19.149 21.241 hybrid contribution 0.371 -0.442 -0.515 0.774 sum -0.625 -9.580 18.634 20.962 Atomic orbital electron populations 1.22214 0.96929 1.01321 1.02170 1.21386 0.93378 0.84435 1.02550 1.48251 1.64109 1.13170 1.07710 1.19230 0.96168 0.93561 0.78150 1.21479 0.96959 1.31533 1.06074 0.92495 1.24925 0.97738 0.95003 0.96444 1.69945 1.35546 1.33623 1.14396 0.86470 0.84843 0.78020 0.78250 1.19865 1.21031 1.20899 1.20128 0.78713 0.87081 0.84710 1.90633 1.44809 1.17848 1.86819 1.22069 1.00132 0.96449 0.90751 1.61656 1.52357 1.08881 1.01075 1.22546 0.92080 0.93416 1.04588 1.20502 0.95251 0.92362 0.90120 0.93708 1.21876 1.02833 0.98705 0.96439 1.19668 0.95400 0.94171 1.02595 1.20934 0.91569 0.99473 0.94342 1.21317 1.01332 0.93056 1.07009 1.19065 0.89324 0.87481 0.96269 1.86032 1.21179 1.36141 1.80100 1.23054 0.82398 1.02350 0.99021 1.20296 0.91018 1.00387 1.05785 1.20796 0.98635 0.91822 0.98421 0.92238 0.93285 0.92034 0.90023 0.91969 0.95190 0.93984 0.92859 0.88505 0.92920 0.91302 0.89213 0.96569 0.92252 0.91486 0.92115 0.84670 0.85531 0.92349 0.92689 0.88389 0.85485 0.85693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.30 10.24 37.16 0.38 -1.92 16 2 C 0.11 1.76 5.93 -4.04 -0.02 1.74 16 3 N -0.60 -12.78 2.46 -175.05 -0.43 -13.21 16 4 C 0.25 6.52 5.16 -5.20 -0.03 6.49 16 5 C -0.52 -14.92 9.39 -34.44 -0.32 -15.25 16 6 H 0.06 1.65 7.81 -52.48 -0.41 1.24 16 7 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 8 N -0.90 -26.80 13.29 55.43 0.74 -26.06 16 9 Si 0.90 22.09 29.54 -169.99 -5.02 17.07 16 10 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 11 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 12 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 13 C 0.51 10.64 7.29 -10.98 -0.08 10.56 16 14 O -0.52 -13.10 13.98 5.56 0.08 -13.03 16 15 C 0.04 0.59 3.78 -4.97 -0.02 0.57 16 16 N -0.52 -7.62 3.84 -237.73 -0.91 -8.53 16 17 C 0.02 0.30 8.52 60.06 0.51 0.81 16 18 C 0.13 1.47 2.25 -68.86 -0.16 1.32 16 19 H 0.05 0.48 7.94 -51.93 -0.41 0.07 16 20 C -0.14 -1.44 8.73 37.16 0.32 -1.11 16 21 C -0.12 -1.42 3.48 -104.60 -0.36 -1.78 16 22 C -0.04 -0.60 8.84 -39.61 -0.35 -0.95 16 23 C -0.21 -2.64 9.04 -39.43 -0.36 -3.00 16 24 C 0.12 1.54 6.69 -39.22 -0.26 1.28 16 25 O -0.32 -3.80 10.50 -19.42 -0.20 -4.01 16 26 C 0.03 0.23 9.81 101.05 0.99 1.22 16 27 C -0.16 -1.77 9.99 -39.43 -0.39 -2.16 16 28 C -0.08 -0.84 9.66 -39.61 -0.38 -1.22 16 29 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.05 0.64 7.22 -51.93 -0.38 0.27 16 31 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 32 H 0.08 1.40 8.07 -51.93 -0.42 0.98 16 33 H 0.06 0.89 6.44 -51.93 -0.33 0.56 16 34 H 0.03 0.80 8.07 -51.93 -0.42 0.38 16 35 H 0.04 1.25 7.42 -51.93 -0.39 0.86 16 36 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 37 H 0.10 1.51 5.84 -51.93 -0.30 1.21 16 38 H 0.05 0.74 7.17 -51.93 -0.37 0.37 16 39 H 0.07 0.88 6.65 -51.93 -0.35 0.54 16 40 H 0.09 1.57 5.79 -51.93 -0.30 1.27 16 41 H 0.02 0.20 8.11 -51.93 -0.42 -0.22 16 42 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.07 0.74 8.09 -51.93 -0.42 0.32 16 44 H 0.06 0.58 6.49 -51.93 -0.34 0.24 16 45 H 0.14 1.98 7.89 -52.48 -0.41 1.57 16 46 H 0.13 1.45 6.30 -52.49 -0.33 1.12 16 47 H 0.06 0.52 7.66 -51.93 -0.40 0.12 16 48 H 0.05 0.42 7.66 -51.93 -0.40 0.02 16 49 H 0.10 0.63 8.14 -51.93 -0.42 0.20 16 50 H 0.13 1.23 8.06 -52.49 -0.42 0.80 16 51 H 0.13 1.05 7.99 -52.49 -0.42 0.63 16 LS Contribution 406.73 15.07 6.13 6.13 Total: -1.00 -33.51 406.73 -8.71 -42.22 By element: Atomic # 1 Polarization: 9.63 SS G_CDS: -8.46 Total: 1.17 kcal Atomic # 6 Polarization: -1.12 SS G_CDS: -0.63 Total: -1.75 kcal Atomic # 7 Polarization: -47.20 SS G_CDS: -0.61 Total: -47.80 kcal Atomic # 8 Polarization: -16.91 SS G_CDS: -0.13 Total: -17.03 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -33.51 -8.71 -42.22 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079950348.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.807 kcal (2) G-P(sol) polarization free energy of solvation -33.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.219 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds