Wall clock time and date at job start Tue Mar 31 2020 18:43:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46507 * 109.47069 * 2 1 4 4 C 1.46500 * 119.99922 * 269.99987 * 3 2 1 5 5 C 1.50694 * 109.47303 * 270.00022 * 4 3 2 6 6 H 1.08006 * 120.00092 * 0.02562 * 5 4 3 7 7 C 1.37880 * 120.00360 * 180.02562 * 5 4 3 8 8 N 1.31516 * 119.99521 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 120.00153 * 179.97438 * 7 5 4 10 10 H 1.48499 * 109.47194 * 0.02562 * 9 7 5 11 11 H 1.48505 * 109.46891 * 120.00431 * 9 7 5 12 12 H 1.48499 * 109.47272 * 240.00144 * 9 7 5 13 13 C 1.34771 * 120.00020 * 90.00077 * 3 2 1 14 14 O 1.21279 * 120.00326 * 180.02562 * 13 3 2 15 15 C 1.50710 * 119.99879 * 0.02562 * 13 3 2 16 16 N 1.46899 * 109.46940 * 180.02562 * 15 13 3 17 17 C 1.46900 * 111.00287 * 66.04352 * 16 15 13 18 18 C 1.46900 * 110.99646 * 190.00381 * 16 15 13 19 19 H 1.09001 * 109.47076 * 301.00537 * 18 16 15 20 20 C 1.52998 * 109.46814 * 181.01132 * 18 16 15 21 21 C 1.50702 * 109.47618 * 61.00923 * 18 16 15 22 22 C 1.38263 * 119.94153 * 45.58526 * 21 18 16 23 23 C 1.38148 * 120.05344 * 179.72483 * 22 21 18 24 24 C 1.38727 * 119.94097 * 0.55168 * 23 22 21 25 25 O 1.35898 * 120.05452 * 179.74683 * 24 23 22 26 26 C 1.42898 * 117.00257 * 359.97438 * 25 24 23 27 27 C 1.38737 * 119.89208 * 359.72530 * 24 23 22 28 28 C 1.38143 * 119.93972 * 359.97438 * 27 24 23 29 29 H 1.08996 * 109.47365 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47053 * 300.00116 * 1 2 3 31 31 H 1.09000 * 109.47292 * 59.99848 * 1 2 3 32 32 H 1.09002 * 109.47235 * 240.00519 * 2 1 3 33 33 H 1.09000 * 109.47292 * 120.00152 * 2 1 3 34 34 H 1.09005 * 109.47038 * 30.00322 * 4 3 2 35 35 H 1.09006 * 109.46909 * 149.99811 * 4 3 2 36 36 H 0.97004 * 119.99959 * 179.97438 * 8 7 5 37 37 H 1.09002 * 109.47143 * 59.99796 * 15 13 3 38 38 H 1.09003 * 109.46792 * 299.99936 * 15 13 3 39 39 H 1.08999 * 109.47026 * 190.86839 * 17 16 15 40 40 H 1.08993 * 109.47153 * 310.86796 * 17 16 15 41 41 H 1.08997 * 109.46930 * 70.86955 * 17 16 15 42 42 H 1.08999 * 109.47122 * 179.97438 * 20 18 16 43 43 H 1.09003 * 109.47507 * 299.99307 * 20 18 16 44 44 H 1.09004 * 109.47623 * 59.99604 * 20 18 16 45 45 H 1.08006 * 119.97457 * 0.02562 * 22 21 18 46 46 H 1.07996 * 120.02908 * 180.27536 * 23 22 21 47 47 H 1.08997 * 109.47064 * 300.00345 * 26 25 24 48 48 H 1.09001 * 109.47200 * 59.99783 * 26 25 24 49 49 H 1.08996 * 109.47610 * 179.97438 * 26 25 24 50 50 H 1.07998 * 120.03054 * 179.97438 * 27 24 23 51 51 H 1.08002 * 119.97016 * 180.02562 * 28 27 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2625 2.0719 -1.2687 5 6 3.6857 1.8351 -1.7038 6 1 4.3426 1.2303 -1.0962 7 6 4.1494 2.3906 -2.8775 8 7 3.3496 3.1275 -3.6171 9 14 5.9138 2.0976 -3.4164 10 1 6.6011 1.2415 -2.4165 11 1 5.9217 1.4192 -4.7374 12 1 6.6210 3.3989 -3.5241 13 6 2.2430 2.0166 1.1671 14 8 2.6468 3.1602 1.1672 15 6 1.9923 1.3059 2.4723 16 7 2.3099 2.2062 3.5889 17 6 1.3825 3.3448 3.6272 18 6 2.3069 1.4814 4.8666 19 1 1.3264 1.0332 5.0278 20 6 2.6161 2.4548 6.0057 21 6 3.3547 0.3988 4.8326 22 6 4.6198 0.6777 4.3495 23 6 5.5837 -0.3115 4.3225 24 6 5.2781 -1.5885 4.7701 25 8 6.2230 -2.5647 4.7398 26 6 7.5104 -2.2060 4.2339 27 6 4.0062 -1.8673 5.2491 28 6 3.0477 -0.8730 5.2797 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3634 0.5139 -0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 1.5816 1.6878 -2.0284 35 1 2.0955 3.1412 -1.1384 36 1 3.6758 3.5186 -4.4427 37 1 2.6229 0.4187 2.5298 38 1 0.9445 1.0114 2.5302 39 1 1.7504 4.0894 4.3332 40 1 1.3116 3.7892 2.6345 41 1 0.3975 3.0007 3.9424 42 1 2.6135 1.9172 6.9539 43 1 3.5966 2.9031 5.8447 44 1 1.8583 3.2379 6.0304 45 1 4.8560 1.6710 3.9973 46 1 6.5730 -0.0920 3.9492 47 1 7.4130 -1.8606 3.2047 48 1 7.9323 -1.4089 4.8461 49 1 8.1682 -3.0745 4.2653 50 1 3.7657 -2.8608 5.5977 51 1 2.0576 -1.0894 5.6529 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000079950348.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:43:53 Heat of formation + Delta-G solvation = -55.195187 kcal Electronic energy + Delta-G solvation = -30046.311252 eV Core-core repulsion = 26138.723081 eV Total energy + Delta-G solvation = -3907.588171 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.34266 -40.74508 -39.28138 -37.50377 -36.74982 -34.91689 -32.89194 -31.98046 -31.60653 -30.64854 -29.41924 -28.45492 -27.66453 -26.22044 -24.68484 -24.05320 -23.74187 -22.87019 -20.95128 -19.84064 -19.07177 -18.62721 -18.04596 -17.42926 -17.24748 -16.72422 -16.63806 -16.53181 -16.26304 -15.67973 -15.45087 -15.16548 -14.73701 -14.69051 -14.55464 -14.42187 -14.25191 -13.97856 -13.81078 -13.59150 -13.45492 -13.29097 -13.08639 -12.92082 -12.79727 -12.77007 -12.67640 -12.58614 -12.50893 -12.32923 -12.15718 -11.91768 -11.85498 -11.70559 -11.67292 -11.58410 -10.65024 -10.45865 -9.90223 -9.41554 -9.17517 -9.02455 -8.22402 -6.36733 0.42728 0.47898 1.33949 1.36474 1.48137 1.89541 2.24825 2.39646 2.40358 2.79184 3.06313 3.08296 3.70516 3.81255 3.91163 3.99025 4.08465 4.17298 4.28439 4.35069 4.35299 4.38015 4.38810 4.43785 4.49757 4.57610 4.59861 4.65462 4.66959 4.70931 4.77342 4.91493 4.94307 4.96258 4.98204 5.05453 5.15736 5.16396 5.22480 5.34469 5.37032 5.37862 5.46731 5.59083 5.68077 5.84913 5.87651 6.02203 6.08114 6.24295 6.45473 6.71571 6.85561 7.29605 7.56832 8.84617 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.008972 B = 0.003974 C = 0.003233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3120.014835 B = 7043.732475 C = 8657.307463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.101 3.899 3 N -0.606 5.606 4 C 0.266 3.734 5 C -0.538 4.538 6 H 0.049 0.951 7 C 0.009 3.991 8 N -0.928 5.928 9 Si 0.965 3.035 10 H -0.269 1.269 11 H -0.268 1.268 12 H -0.281 1.281 13 C 0.498 3.502 14 O -0.576 6.576 15 C 0.058 3.942 16 N -0.537 5.537 17 C 0.028 3.972 18 C 0.129 3.871 19 H 0.069 0.931 20 C -0.138 4.138 21 C -0.122 4.122 22 C -0.063 4.063 23 C -0.221 4.221 24 C 0.112 3.888 25 O -0.333 6.333 26 C 0.021 3.979 27 C -0.158 4.158 28 C -0.069 4.069 29 H 0.095 0.905 30 H 0.058 0.942 31 H 0.039 0.961 32 H 0.070 0.930 33 H 0.091 0.909 34 H 0.020 0.980 35 H -0.004 1.004 36 H 0.267 0.733 37 H 0.104 0.896 38 H 0.081 0.919 39 H 0.078 0.922 40 H 0.049 0.951 41 H 0.041 0.959 42 H 0.078 0.922 43 H 0.049 0.951 44 H 0.068 0.932 45 H 0.111 0.889 46 H 0.128 0.872 47 H 0.052 0.948 48 H 0.061 0.939 49 H 0.122 0.878 50 H 0.146 0.854 51 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.200 -12.486 21.357 24.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.022 4.022 3 N -0.338 5.338 4 C 0.144 3.856 5 C -0.577 4.577 6 H 0.067 0.933 7 C -0.190 4.190 8 N -0.568 5.568 9 Si 0.789 3.211 10 H -0.193 1.193 11 H -0.193 1.193 12 H -0.207 1.207 13 C 0.286 3.714 14 O -0.456 6.456 15 C -0.073 4.073 16 N -0.262 5.262 17 C -0.120 4.120 18 C 0.022 3.978 19 H 0.087 0.913 20 C -0.195 4.195 21 C -0.123 4.123 22 C -0.081 4.081 23 C -0.240 4.240 24 C 0.067 3.933 25 O -0.247 6.247 26 C -0.074 4.074 27 C -0.177 4.177 28 C -0.087 4.087 29 H 0.114 0.886 30 H 0.077 0.923 31 H 0.059 0.941 32 H 0.089 0.911 33 H 0.110 0.890 34 H 0.038 0.962 35 H 0.014 0.986 36 H 0.076 0.924 37 H 0.122 0.878 38 H 0.099 0.901 39 H 0.097 0.903 40 H 0.068 0.932 41 H 0.060 0.940 42 H 0.097 0.903 43 H 0.068 0.932 44 H 0.087 0.913 45 H 0.129 0.871 46 H 0.146 0.854 47 H 0.070 0.930 48 H 0.080 0.920 49 H 0.140 0.860 50 H 0.164 0.836 51 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -1.545 -11.809 21.169 24.289 hybrid contribution 0.551 0.379 -1.112 1.298 sum -0.994 -11.430 20.057 23.106 Atomic orbital electron populations 1.22132 0.94381 1.03491 1.01640 1.21688 0.95431 0.81611 1.03440 1.48282 1.64319 1.14965 1.06277 1.18645 0.95096 0.91432 0.80395 1.21711 0.97912 1.31713 1.06376 0.93308 1.25822 1.02237 0.94514 0.96433 1.70058 1.37617 1.34270 1.14863 0.85409 0.79248 0.78014 0.78389 1.19345 1.19286 1.20695 1.21144 0.77346 0.86703 0.86181 1.90606 1.46967 1.20301 1.87703 1.21858 1.01738 0.95712 0.87999 1.61575 1.53105 1.09357 1.02199 1.22416 0.93447 0.93603 1.02536 1.20595 0.96216 0.92375 0.88643 0.91310 1.21862 1.02103 0.98807 0.96731 1.19760 0.94758 0.95055 1.02689 1.20833 0.92856 0.98634 0.95799 1.21378 1.01477 0.93462 1.07639 1.19284 0.90164 0.87335 0.96506 1.86015 1.22077 1.36287 1.80273 1.23262 0.81636 1.03814 0.98675 1.20631 0.90548 1.01467 1.05021 1.21087 0.99816 0.90640 0.97129 0.88611 0.92266 0.94138 0.91136 0.89044 0.96191 0.98597 0.92445 0.87830 0.90102 0.90318 0.93188 0.94036 0.90319 0.93198 0.91349 0.87098 0.85440 0.92962 0.91995 0.86020 0.83634 0.82497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.01 10.24 71.98 0.74 -3.27 16 2 C 0.10 3.22 5.93 86.38 0.51 3.73 16 3 N -0.61 -26.48 2.46 -826.13 -2.03 -28.51 16 4 C 0.27 14.72 5.16 85.63 0.44 15.16 16 5 C -0.54 -31.90 9.39 25.60 0.24 -31.66 16 6 H 0.05 2.90 7.81 -2.91 -0.02 2.88 16 7 C 0.01 0.51 5.46 84.66 0.46 0.98 16 8 N -0.93 -57.10 13.29 21.45 0.28 -56.82 16 9 Si 0.96 45.95 29.54 68.60 2.03 47.97 16 10 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 11 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 12 H -0.28 -13.25 7.11 99.48 0.71 -12.54 16 13 C 0.50 21.36 7.29 87.66 0.64 21.99 16 14 O -0.58 -30.40 13.98 -3.03 -0.04 -30.44 16 15 C 0.06 1.74 3.78 85.56 0.32 2.06 16 16 N -0.54 -15.30 3.84 -906.03 -3.48 -18.78 16 17 C 0.03 0.76 8.52 127.69 1.09 1.85 16 18 C 0.13 2.67 2.25 44.17 0.10 2.77 16 19 H 0.07 1.14 7.94 -2.39 -0.02 1.12 16 20 C -0.14 -2.49 8.73 71.98 0.63 -1.87 16 21 C -0.12 -2.67 3.48 -19.85 -0.07 -2.74 16 22 C -0.06 -1.66 8.84 22.25 0.20 -1.47 16 23 C -0.22 -5.56 9.04 22.37 0.20 -5.35 16 24 C 0.11 2.63 6.69 22.51 0.15 2.78 16 25 O -0.33 -7.42 10.50 -92.40 -0.97 -8.39 16 26 C 0.02 0.34 9.81 113.37 1.11 1.45 16 27 C -0.16 -3.11 9.99 22.37 0.22 -2.89 16 28 C -0.07 -1.22 9.66 22.25 0.21 -1.00 16 29 H 0.10 1.76 8.14 -2.39 -0.02 1.74 16 30 H 0.06 1.38 7.22 -2.39 -0.02 1.36 16 31 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 32 H 0.07 2.40 8.07 -2.39 -0.02 2.38 16 33 H 0.09 2.39 6.44 -2.39 -0.02 2.37 16 34 H 0.02 1.13 8.07 -2.38 -0.02 1.11 16 35 H 0.00 -0.26 7.42 -2.38 -0.02 -0.28 16 36 H 0.27 15.32 8.31 -92.71 -0.77 14.55 16 37 H 0.10 3.01 5.84 -2.39 -0.01 3.00 16 38 H 0.08 1.99 7.17 -2.39 -0.02 1.97 16 39 H 0.08 1.97 6.65 -2.39 -0.02 1.96 16 40 H 0.05 1.81 5.79 -2.39 -0.01 1.79 16 41 H 0.04 0.92 8.11 -2.39 -0.02 0.90 16 42 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 43 H 0.05 1.07 8.09 -2.39 -0.02 1.05 16 44 H 0.07 1.13 6.49 -2.38 -0.02 1.11 16 45 H 0.11 3.43 7.89 -2.91 -0.02 3.41 16 46 H 0.13 3.00 6.30 -2.91 -0.02 2.98 16 47 H 0.05 0.90 7.66 -2.39 -0.02 0.89 16 48 H 0.06 0.90 7.66 -2.39 -0.02 0.89 16 49 H 0.12 1.34 8.14 -2.39 -0.02 1.32 16 50 H 0.15 2.29 8.06 -2.91 -0.02 2.26 16 51 H 0.16 1.77 7.99 -2.91 -0.02 1.75 16 Total: -1.00 -77.15 406.73 3.90 -73.26 By element: Atomic # 1 Polarization: 18.28 SS G_CDS: 0.90 Total: 19.18 kcal Atomic # 6 Polarization: -4.68 SS G_CDS: 7.20 Total: 2.52 kcal Atomic # 7 Polarization: -98.88 SS G_CDS: -5.22 Total: -104.10 kcal Atomic # 8 Polarization: -37.81 SS G_CDS: -1.01 Total: -38.83 kcal Atomic # 14 Polarization: 45.95 SS G_CDS: 2.03 Total: 47.97 kcal Total: -77.15 3.90 -73.26 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079950348.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.061 kcal (2) G-P(sol) polarization free energy of solvation -77.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.256 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds