Wall clock time and date at job start Tue Mar 31 2020 18:42:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46895 * 109.47467 * 2 1 4 4 C 1.46898 * 110.99883 * 296.65107 * 3 2 1 5 5 C 1.50699 * 109.47638 * 288.57034 * 4 3 2 6 6 H 1.08006 * 119.99669 * 1.03345 * 5 4 3 7 7 C 1.37877 * 120.00299 * 181.03115 * 5 4 3 8 8 N 1.31510 * 120.00011 * 180.02562 * 7 5 4 9 9 Si 1.86794 * 119.99898 * 0.02562 * 7 5 4 10 10 H 1.48494 * 109.47241 * 90.00074 * 9 7 5 11 11 H 1.48500 * 109.47157 * 210.00146 * 9 7 5 12 12 H 1.48507 * 109.47410 * 329.99840 * 9 7 5 13 13 C 1.46895 * 111.00237 * 60.60710 * 3 2 1 14 14 C 1.50706 * 109.47298 * 66.04528 * 13 3 2 15 15 O 1.21284 * 119.99335 * 0.02562 * 14 13 3 16 16 N 1.34774 * 120.00419 * 180.02562 * 14 13 3 17 17 C 1.46500 * 120.00187 * 179.97438 * 16 14 13 18 18 C 1.53000 * 109.47150 * 179.97438 * 17 16 14 19 19 C 1.53005 * 109.46883 * 180.02562 * 18 17 16 20 20 O 1.42898 * 109.46582 * 180.02562 * 19 18 17 21 21 C 1.35906 * 116.99742 * 179.97438 * 20 19 18 22 22 C 1.38747 * 120.05358 * 0.02562 * 21 20 19 23 23 C 1.38123 * 119.94513 * 179.97438 * 22 21 20 24 24 C 1.38290 * 120.05494 * 359.74793 * 23 22 21 25 25 C 1.38249 * 120.10843 * 0.50902 * 24 23 22 26 26 C 1.50700 * 119.97114 * 179.76713 * 25 24 23 27 27 C 1.38165 * 120.05299 * 359.48681 * 25 24 23 28 28 H 1.09006 * 109.47285 * 58.23348 * 1 2 3 29 29 H 1.08995 * 109.47639 * 178.23506 * 1 2 3 30 30 H 1.09008 * 109.47002 * 298.24101 * 1 2 3 31 31 H 1.08999 * 109.46712 * 239.99995 * 2 1 3 32 32 H 1.09001 * 109.47036 * 119.99996 * 2 1 3 33 33 H 1.08997 * 109.47146 * 48.57449 * 4 3 2 34 34 H 1.09009 * 109.47096 * 168.57010 * 4 3 2 35 35 H 0.96998 * 119.99963 * 180.02562 * 8 7 5 36 36 H 1.08997 * 109.47213 * 306.04748 * 13 3 2 37 37 H 1.08997 * 109.47865 * 186.04578 * 13 3 2 38 38 H 0.96999 * 119.99991 * 0.02562 * 16 14 13 39 39 H 1.08997 * 109.46816 * 59.99920 * 17 16 14 40 40 H 1.08997 * 109.46928 * 300.00567 * 17 16 14 41 41 H 1.09004 * 109.46929 * 60.00382 * 18 17 16 42 42 H 1.08996 * 109.47212 * 300.00015 * 18 17 16 43 43 H 1.08997 * 109.47111 * 59.99969 * 19 18 17 44 44 H 1.09003 * 109.46702 * 299.99796 * 19 18 17 45 45 H 1.08008 * 120.03293 * 359.95485 * 22 21 20 46 46 H 1.08000 * 119.97700 * 180.02562 * 23 22 21 47 47 H 1.07994 * 119.94656 * 180.27241 * 24 23 22 48 48 H 1.08995 * 109.47384 * 269.72015 * 26 25 24 49 49 H 1.08999 * 109.47310 * 29.72358 * 26 25 24 50 50 H 1.08999 * 109.47111 * 149.71709 * 26 25 24 51 51 H 1.08004 * 120.02787 * 180.23485 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.6152 2.0863 -1.2257 5 6 2.4023 1.5509 -2.3940 6 1 3.1183 0.7563 -2.2440 7 6 2.2084 2.0753 -3.6543 8 7 2.8950 1.6077 -4.6738 9 14 0.9706 3.4500 -3.9135 10 1 1.6447 4.7620 -3.7421 11 1 0.4085 3.3579 -5.2849 12 1 -0.1256 3.3231 -2.9197 13 6 1.5607 2.1057 1.1948 14 6 2.1950 1.5011 2.4209 15 8 2.9551 0.5625 2.3100 16 7 1.9178 2.0033 3.6404 17 6 2.5341 1.4152 4.8323 18 6 2.0561 2.1660 6.0768 19 6 2.7002 1.5521 7.3215 20 8 2.2533 2.2530 8.4838 21 6 2.7345 1.8300 9.6824 22 6 3.6192 0.7626 9.7384 23 6 4.1073 0.3350 10.9577 24 6 3.7190 0.9730 12.1215 25 6 2.8335 2.0334 12.0688 26 6 2.4084 2.7231 13.3395 27 6 2.3425 2.4650 10.8516 28 1 -0.3634 0.5410 -0.8738 29 1 -0.3634 -1.0271 -0.0316 30 1 -0.3633 0.4863 0.9054 31 1 1.8932 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 0.5512 1.9273 -1.4010 34 1 1.8098 3.1531 -1.1149 35 1 2.7588 1.9769 -5.5604 36 1 0.4761 2.0285 1.2714 37 1 1.8457 3.1549 1.1182 38 1 1.3096 2.7538 3.7291 39 1 3.6186 1.4923 4.7561 40 1 2.2489 0.3660 4.9085 41 1 0.9714 2.0892 6.1532 42 1 2.3416 3.2151 6.0003 43 1 3.7848 1.6292 7.2449 44 1 2.4150 0.5029 7.3982 45 1 3.9257 0.2663 8.8294 46 1 4.7962 -0.4956 11.0019 47 1 4.1051 0.6400 13.0735 48 1 1.5151 2.2392 13.7343 49 1 3.2112 2.6588 14.0740 50 1 2.1914 3.7704 13.1294 51 1 1.6537 3.2959 10.8106 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000081039496.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:42:07 Heat of formation + Delta-G solvation = -71.124915 kcal Electronic energy + Delta-G solvation = -27290.668289 eV Core-core repulsion = 23382.389353 eV Total energy + Delta-G solvation = -3908.278936 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.17056 -40.89497 -38.82434 -38.37032 -36.41656 -34.65863 -33.48685 -33.28240 -31.43236 -31.02600 -30.32410 -28.00425 -27.53953 -25.95853 -24.66314 -23.58181 -22.97495 -22.07431 -21.64104 -20.75513 -18.90223 -18.76531 -17.87871 -17.47761 -17.29385 -17.01370 -16.84763 -16.72310 -16.29053 -16.14790 -15.80065 -15.18917 -15.11525 -14.77382 -14.56781 -14.44453 -14.32382 -14.29522 -14.12634 -13.50427 -13.31697 -13.25093 -13.11253 -12.96560 -12.89428 -12.67311 -12.55830 -12.44372 -12.40021 -12.36811 -12.31505 -11.90397 -11.71329 -11.62220 -11.55845 -11.45755 -10.74301 -10.67243 -10.07361 -9.74780 -9.16126 -8.88899 -8.24111 -6.27650 0.35240 0.47882 1.37638 1.40385 1.50631 1.69966 1.86177 2.38035 2.40405 2.78848 3.09019 3.34009 3.77222 3.85910 3.87778 3.89447 4.03274 4.07193 4.16841 4.22124 4.26390 4.33280 4.38130 4.40550 4.43971 4.47149 4.53564 4.54062 4.60572 4.65013 4.74304 4.83885 4.86441 4.93466 5.00798 5.01853 5.08623 5.10638 5.23654 5.24265 5.35905 5.41785 5.49516 5.49859 5.58510 5.65440 5.85862 6.00132 6.35476 6.42909 6.55879 6.74410 6.78960 7.33989 7.36395 8.93474 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.032908 B = 0.001475 C = 0.001453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 850.642576 B =18978.892363 C =19266.774585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.058 3.942 3 N -0.536 5.536 4 C 0.170 3.830 5 C -0.515 4.515 6 H 0.025 0.975 7 C 0.003 3.997 8 N -0.954 5.954 9 Si 0.953 3.047 10 H -0.264 1.264 11 H -0.285 1.285 12 H -0.242 1.242 13 C 0.028 3.972 14 C 0.517 3.483 15 O -0.564 6.564 16 N -0.719 5.719 17 C 0.127 3.873 18 C -0.115 4.115 19 C 0.061 3.939 20 O -0.328 6.328 21 C 0.116 3.884 22 C -0.228 4.228 23 C -0.083 4.083 24 C -0.168 4.168 25 C -0.055 4.055 26 C -0.114 4.114 27 C -0.173 4.173 28 H 0.049 0.951 29 H 0.068 0.932 30 H 0.068 0.932 31 H 0.042 0.958 32 H 0.076 0.924 33 H 0.008 0.992 34 H 0.034 0.966 35 H 0.266 0.734 36 H 0.086 0.914 37 H 0.115 0.885 38 H 0.417 0.583 39 H 0.060 0.940 40 H 0.064 0.936 41 H 0.091 0.909 42 H 0.089 0.911 43 H 0.071 0.929 44 H 0.072 0.928 45 H 0.136 0.864 46 H 0.144 0.856 47 H 0.143 0.857 48 H 0.081 0.919 49 H 0.081 0.919 50 H 0.073 0.927 51 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.959 3.841 37.765 38.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.070 4.070 3 N -0.260 5.260 4 C 0.043 3.957 5 C -0.554 4.554 6 H 0.044 0.956 7 C -0.193 4.193 8 N -0.595 5.595 9 Si 0.776 3.224 10 H -0.189 1.189 11 H -0.211 1.211 12 H -0.165 1.165 13 C -0.103 4.103 14 C 0.304 3.696 15 O -0.442 6.442 16 N -0.374 5.374 17 C 0.003 3.997 18 C -0.153 4.153 19 C -0.015 4.015 20 O -0.242 6.242 21 C 0.071 3.929 22 C -0.246 4.246 23 C -0.101 4.101 24 C -0.187 4.187 25 C -0.055 4.055 26 C -0.171 4.171 27 C -0.192 4.192 28 H 0.068 0.932 29 H 0.087 0.913 30 H 0.087 0.913 31 H 0.061 0.939 32 H 0.094 0.906 33 H 0.026 0.974 34 H 0.052 0.948 35 H 0.075 0.925 36 H 0.104 0.896 37 H 0.133 0.867 38 H 0.254 0.746 39 H 0.078 0.922 40 H 0.082 0.918 41 H 0.109 0.891 42 H 0.107 0.893 43 H 0.089 0.911 44 H 0.091 0.909 45 H 0.154 0.846 46 H 0.161 0.839 47 H 0.160 0.840 48 H 0.100 0.900 49 H 0.099 0.901 50 H 0.092 0.908 51 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -4.997 3.332 37.477 37.955 hybrid contribution -0.853 0.316 -1.062 1.398 sum -5.850 3.647 36.415 37.062 Atomic orbital electron populations 1.22317 0.97124 1.02719 1.01682 1.22012 0.93483 0.90172 1.01346 1.61689 1.60491 1.02488 1.01305 1.20033 0.94269 0.94135 0.87229 1.21272 1.22109 1.19618 0.92390 0.95622 1.25930 0.98266 0.99866 0.95267 1.70081 1.43811 1.44927 1.00657 0.85632 0.79700 0.79048 0.78025 1.18918 1.21112 1.16483 1.22135 0.99578 0.99857 0.88751 1.20819 0.80904 0.82817 0.85085 1.90661 1.37096 1.29735 1.86734 1.45747 1.49495 1.37181 1.04933 1.21078 0.97871 0.97482 0.83290 1.21527 1.02494 1.01089 0.90187 1.22731 0.99592 0.96378 0.82778 1.85989 1.67323 1.57698 1.13177 1.19212 0.94076 0.94021 0.85597 1.21495 1.02724 1.00068 1.00363 1.21274 0.98107 0.99082 0.91655 1.21295 1.00393 0.97622 0.99343 1.20066 0.95069 0.95341 0.95019 1.20870 1.02593 1.00337 0.93289 1.20530 1.05168 1.03476 0.89994 0.93235 0.91312 0.91273 0.93909 0.90582 0.97407 0.94797 0.92548 0.89601 0.86669 0.74561 0.92173 0.91789 0.89068 0.89288 0.91112 0.90946 0.84579 0.83864 0.83957 0.90010 0.90057 0.90841 0.84909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.88 9.26 71.98 0.67 -5.21 16 2 C 0.06 2.38 5.58 86.30 0.48 2.86 16 3 N -0.54 -22.75 4.40 -905.40 -3.98 -26.73 16 4 C 0.17 7.97 3.66 85.56 0.31 8.28 16 5 C -0.52 -30.56 9.11 25.60 0.23 -30.32 16 6 H 0.03 1.75 7.70 -2.91 -0.02 1.73 16 7 C 0.00 0.18 5.47 84.66 0.46 0.65 16 8 N -0.95 -60.94 13.96 21.45 0.30 -60.64 16 9 Si 0.95 43.32 27.45 68.60 1.88 45.21 16 10 H -0.26 -11.46 7.11 99.48 0.71 -10.75 16 11 H -0.29 -12.84 7.11 99.48 0.71 -12.13 16 12 H -0.24 -9.85 6.57 99.48 0.65 -9.20 16 13 C 0.03 0.83 5.21 85.56 0.45 1.28 16 14 C 0.52 15.21 7.55 87.66 0.66 15.87 16 15 O -0.56 -22.17 14.31 -3.04 -0.04 -22.21 16 16 N -0.72 -13.57 5.56 -463.06 -2.57 -16.14 16 17 C 0.13 2.12 5.67 86.38 0.49 2.61 16 18 C -0.12 -1.32 5.70 30.60 0.17 -1.14 16 19 C 0.06 0.79 4.74 71.98 0.34 1.13 16 20 O -0.33 -5.74 10.14 -92.49 -0.94 -6.68 16 21 C 0.12 2.05 6.69 22.50 0.15 2.20 16 22 C -0.23 -3.53 9.04 22.36 0.20 -3.33 16 23 C -0.08 -1.10 10.04 22.25 0.22 -0.87 16 24 C -0.17 -2.07 9.70 22.28 0.22 -1.86 16 25 C -0.05 -0.72 5.88 -19.88 -0.12 -0.83 16 26 C -0.11 -0.84 10.01 71.24 0.71 -0.13 16 27 C -0.17 -2.78 9.64 22.36 0.22 -2.57 16 28 H 0.05 1.76 6.18 -2.38 -0.01 1.75 16 29 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 30 H 0.07 1.86 6.38 -2.38 -0.02 1.84 16 31 H 0.04 2.07 7.15 -2.39 -0.02 2.05 16 32 H 0.08 3.12 5.87 -2.39 -0.01 3.10 16 33 H 0.01 0.38 5.01 -2.39 -0.01 0.36 16 34 H 0.03 1.51 7.19 -2.38 -0.02 1.49 16 35 H 0.27 15.76 8.31 -92.71 -0.77 14.99 16 36 H 0.09 2.11 6.05 -2.39 -0.01 2.09 16 37 H 0.12 3.02 7.87 -2.39 -0.02 3.00 16 38 H 0.42 4.93 8.47 -92.71 -0.79 4.15 16 39 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 40 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 41 H 0.09 0.91 8.14 -2.38 -0.02 0.89 16 42 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 43 H 0.07 0.87 7.66 -2.39 -0.02 0.85 16 44 H 0.07 0.85 7.66 -2.39 -0.02 0.84 16 45 H 0.14 1.75 6.30 -2.91 -0.02 1.73 16 46 H 0.14 1.24 8.06 -2.91 -0.02 1.21 16 47 H 0.14 1.09 8.06 -2.91 -0.02 1.06 16 48 H 0.08 0.48 8.14 -2.39 -0.02 0.46 16 49 H 0.08 0.41 8.08 -2.39 -0.02 0.39 16 50 H 0.07 0.48 8.08 -2.39 -0.02 0.46 16 51 H 0.13 1.89 8.06 -2.91 -0.02 1.86 16 Total: -1.00 -79.74 406.54 0.61 -79.13 By element: Atomic # 1 Polarization: 19.36 SS G_CDS: 0.09 Total: 19.44 kcal Atomic # 6 Polarization: -17.26 SS G_CDS: 5.88 Total: -11.38 kcal Atomic # 7 Polarization: -97.25 SS G_CDS: -6.25 Total: -103.51 kcal Atomic # 8 Polarization: -27.91 SS G_CDS: -0.98 Total: -28.89 kcal Atomic # 14 Polarization: 43.32 SS G_CDS: 1.88 Total: 45.21 kcal Total: -79.74 0.61 -79.13 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081039496.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.007 kcal (2) G-P(sol) polarization free energy of solvation -79.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.131 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds