Wall clock time and date at job start Tue Mar 31 2020 18:41:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46907 * 109.46965 * 2 1 4 4 C 1.46896 * 111.00020 * 199.67189 * 3 2 1 5 5 C 1.50697 * 109.47433 * 66.04150 * 4 3 2 6 6 H 1.08001 * 120.00220 * 0.02562 * 5 4 3 7 7 C 1.37877 * 120.00104 * 180.02562 * 5 4 3 8 8 N 1.31512 * 120.00082 * 0.02562 * 7 5 4 9 9 Si 1.86810 * 119.99991 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.46827 * 59.99737 * 9 7 5 11 11 H 1.48495 * 109.46933 * 179.97438 * 9 7 5 12 12 H 1.48497 * 109.46894 * 300.00058 * 9 7 5 13 13 C 1.46895 * 111.00114 * 75.71575 * 3 2 1 14 14 C 1.50694 * 109.47068 * 200.53764 * 13 3 2 15 15 O 1.21284 * 120.00351 * 4.81886 * 14 13 3 16 16 N 1.34779 * 120.00072 * 184.82016 * 14 13 3 17 17 C 1.46496 * 120.00033 * 179.97438 * 16 14 13 18 18 C 1.50707 * 109.47352 * 180.02562 * 17 16 14 19 19 C 1.38289 * 119.96923 * 269.98103 * 18 17 16 20 20 C 1.38238 * 120.10923 * 180.02562 * 19 18 17 21 21 C 1.38175 * 120.05723 * 359.67679 * 20 19 18 22 22 C 1.38714 * 119.93855 * 0.61946 * 21 20 19 23 23 O 1.35904 * 120.05274 * 179.67739 * 22 21 20 24 24 C 1.42898 * 116.99939 * 358.73569 * 23 22 21 25 25 C 1.53002 * 109.46931 * 156.29644 * 24 23 22 26 26 C 1.52999 * 109.47326 * 276.29812 * 24 23 22 27 27 C 1.38125 * 119.97076 * 89.99372 * 18 17 16 28 28 H 1.09004 * 109.46895 * 184.43191 * 1 2 3 29 29 H 1.08996 * 109.47237 * 304.42797 * 1 2 3 30 30 H 1.08991 * 109.47072 * 64.43313 * 1 2 3 31 31 H 1.08996 * 109.47502 * 240.00172 * 2 1 3 32 32 H 1.08997 * 109.47633 * 119.99849 * 2 1 3 33 33 H 1.08996 * 109.47421 * 186.04633 * 4 3 2 34 34 H 1.09001 * 109.47331 * 306.04489 * 4 3 2 35 35 H 0.96998 * 120.00086 * 180.02562 * 8 7 5 36 36 H 1.08999 * 109.47206 * 80.53501 * 13 3 2 37 37 H 1.09007 * 109.47048 * 320.53689 * 13 3 2 38 38 H 0.97002 * 120.00190 * 0.02562 * 16 14 13 39 39 H 1.09001 * 109.47236 * 60.00167 * 17 16 14 40 40 H 1.09003 * 109.47054 * 299.99620 * 17 16 14 41 41 H 1.08001 * 119.94692 * 359.97438 * 19 18 17 42 42 H 1.08001 * 119.97807 * 179.97438 * 20 19 18 43 43 H 1.07997 * 120.02694 * 180.29609 * 21 20 19 44 44 H 1.09004 * 109.46983 * 36.30422 * 24 23 22 45 45 H 1.08996 * 109.46920 * 60.00344 * 25 24 23 46 46 H 1.09003 * 109.46847 * 180.02562 * 25 24 23 47 47 H 1.08993 * 109.47043 * 300.00016 * 25 24 23 48 48 H 1.09003 * 109.47102 * 179.97438 * 26 24 23 49 49 H 1.08996 * 109.47265 * 300.00109 * 26 24 23 50 50 H 1.08995 * 109.46937 * 60.00669 * 26 24 23 51 51 H 1.07994 * 120.02932 * 0.02823 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3851 0.0000 4 6 3.4126 1.4510 -0.4617 5 6 3.4810 1.0465 -1.9117 6 1 2.5797 0.7687 -2.4380 7 6 4.6942 1.0311 -2.5667 8 7 5.7918 1.3689 -1.9258 9 14 4.7788 0.5304 -4.3644 10 1 3.9450 1.4538 -5.1752 11 1 6.1870 0.5969 -4.8310 12 1 4.2715 -0.8570 -4.5162 13 6 1.8761 1.9942 1.3290 14 6 1.8965 3.4953 1.1984 15 8 1.9306 4.0081 0.0998 16 7 1.8770 4.2682 2.3024 17 6 1.8975 5.7275 2.1754 18 6 1.8699 6.3516 3.5469 19 6 0.6598 6.6521 4.1449 20 6 0.6312 7.2251 5.4027 21 6 1.8121 7.4928 6.0682 22 6 3.0273 7.1979 5.4679 23 8 4.1904 7.4663 6.1177 24 6 4.0880 8.0781 7.4050 25 6 5.3509 7.7770 8.2146 26 6 3.9368 9.5917 7.2399 27 6 3.0534 6.6231 4.2053 28 1 -0.3633 -1.0246 0.0794 29 1 -0.3633 0.5810 0.8476 30 1 -0.3633 0.4435 -0.9270 31 1 1.8934 -0.5138 -0.8899 32 1 1.8934 -0.5138 0.8899 33 1 3.7844 2.4695 -0.3507 34 1 4.0252 0.7738 0.1336 35 1 6.6452 1.3585 -2.3867 36 1 2.7001 1.6737 1.9665 37 1 0.9308 1.6809 1.7721 38 1 1.8502 3.8582 3.1811 39 1 1.0256 6.0552 1.6092 40 1 2.8049 6.0343 1.6553 41 1 -0.2644 6.4396 3.6282 42 1 -0.3151 7.4593 5.8676 43 1 1.7891 7.9360 7.0528 44 1 3.2179 7.6809 7.9279 45 1 6.2209 8.1742 7.6918 46 1 5.2725 8.2434 9.1968 47 1 5.4585 6.6988 8.3323 48 1 3.8583 10.0583 8.2218 49 1 4.8068 9.9888 6.7170 50 1 3.0371 9.8061 6.6632 51 1 3.9982 6.3888 3.7376 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000081513869.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:41:59 Heat of formation + Delta-G solvation = -47.559084 kcal Electronic energy + Delta-G solvation = -28195.835902 eV Core-core repulsion = 24288.578857 eV Total energy + Delta-G solvation = -3907.257045 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.64017 -39.29783 -38.13720 -36.38730 -34.49365 -33.59501 -32.53408 -31.51020 -30.20510 -29.98388 -28.31016 -27.71339 -26.25892 -24.67510 -22.99031 -22.73662 -22.32278 -20.66573 -20.49776 -19.54665 -18.38150 -16.68295 -16.45999 -16.37233 -16.20928 -15.88332 -15.53670 -15.15539 -14.68641 -14.50329 -14.31535 -13.99777 -13.83771 -13.74539 -13.46274 -13.14732 -13.04521 -12.82961 -12.70795 -12.59926 -12.42293 -12.14959 -12.11107 -11.92912 -11.77414 -11.52287 -11.39765 -11.17968 -11.11736 -10.92281 -10.84590 -10.64814 -10.43438 -10.09461 -9.75910 -9.43356 -9.15277 -8.91931 -8.74525 -8.42504 -8.31755 -7.17522 -5.91061 -3.90506 0.96648 1.20580 2.84231 3.25225 3.30635 3.41596 3.45119 3.49258 3.78050 4.29578 4.42593 4.46558 4.52704 4.57782 4.62215 4.81959 4.97583 5.02707 5.07663 5.08594 5.23816 5.28346 5.30925 5.34152 5.38785 5.44834 5.55698 5.63784 5.66020 5.71053 5.79237 5.81630 5.84479 5.89083 6.02178 6.05280 6.11568 6.15987 6.34535 6.38416 6.50405 6.70120 6.74858 6.82271 7.17475 7.37893 7.38749 7.81064 7.93568 8.22167 8.28898 8.62376 8.83983 9.15425 9.71885 11.20353 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.014460 B = 0.002154 C = 0.001994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1935.952625 B =12993.239170 C =14035.637871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.056 3.944 3 N -0.519 5.519 4 C 0.196 3.804 5 C -0.499 4.499 6 H 0.063 0.937 7 C 0.054 3.946 8 N -0.901 5.901 9 Si 0.898 3.102 10 H -0.276 1.276 11 H -0.289 1.289 12 H -0.278 1.278 13 C 0.038 3.962 14 C 0.511 3.489 15 O -0.499 6.499 16 N -0.740 5.740 17 C 0.163 3.837 18 C -0.060 4.060 19 C -0.140 4.140 20 C -0.082 4.082 21 C -0.209 4.209 22 C 0.130 3.870 23 O -0.309 6.309 24 C 0.076 3.924 25 C -0.149 4.149 26 C -0.180 4.180 27 C -0.134 4.134 28 H 0.047 0.953 29 H 0.043 0.957 30 H 0.059 0.941 31 H 0.090 0.910 32 H 0.018 0.982 33 H 0.036 0.964 34 H -0.013 1.013 35 H 0.260 0.740 36 H 0.052 0.948 37 H 0.089 0.911 38 H 0.396 0.604 39 H 0.076 0.924 40 H 0.076 0.924 41 H 0.126 0.874 42 H 0.125 0.875 43 H 0.128 0.872 44 H 0.073 0.927 45 H 0.068 0.932 46 H 0.076 0.924 47 H 0.066 0.934 48 H 0.071 0.929 49 H 0.068 0.932 50 H 0.063 0.937 51 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.439 12.969 23.788 28.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.072 4.072 3 N -0.244 5.244 4 C 0.071 3.929 5 C -0.538 4.538 6 H 0.081 0.919 7 C -0.147 4.147 8 N -0.541 5.541 9 Si 0.726 3.274 10 H -0.202 1.202 11 H -0.215 1.215 12 H -0.204 1.204 13 C -0.095 4.095 14 C 0.297 3.703 15 O -0.371 6.371 16 N -0.396 5.396 17 C 0.039 3.961 18 C -0.061 4.061 19 C -0.159 4.159 20 C -0.101 4.101 21 C -0.228 4.228 22 C 0.085 3.915 23 O -0.223 6.223 24 C 0.020 3.980 25 C -0.207 4.207 26 C -0.238 4.238 27 C -0.153 4.153 28 H 0.066 0.934 29 H 0.062 0.938 30 H 0.078 0.922 31 H 0.108 0.892 32 H 0.037 0.963 33 H 0.054 0.946 34 H 0.005 0.995 35 H 0.070 0.930 36 H 0.070 0.930 37 H 0.107 0.893 38 H 0.229 0.771 39 H 0.094 0.906 40 H 0.094 0.906 41 H 0.144 0.856 42 H 0.143 0.857 43 H 0.146 0.854 44 H 0.091 0.909 45 H 0.087 0.913 46 H 0.095 0.905 47 H 0.085 0.915 48 H 0.090 0.910 49 H 0.087 0.913 50 H 0.082 0.918 51 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -8.285 13.595 22.498 27.561 hybrid contribution 0.529 -0.644 0.333 0.898 sum -7.756 12.951 22.832 27.371 Atomic orbital electron populations 1.21803 0.96611 0.99907 1.01796 1.22010 0.94230 0.89792 1.01172 1.61824 1.26280 1.16489 1.19786 1.19764 0.80616 0.97092 0.95425 1.21079 0.93145 1.44108 0.95450 0.91929 1.24974 0.95671 0.95783 0.98282 1.69951 0.98388 1.49081 1.36653 0.86565 0.76737 0.78939 0.85179 1.20169 1.21465 1.20359 1.21893 1.01695 0.91519 0.94344 1.20871 0.75910 0.89629 0.83898 1.90749 1.45732 1.74781 1.25814 1.46078 1.78562 1.05561 1.09389 1.20101 1.03361 0.80527 0.92103 1.19749 0.92507 0.98062 0.95787 1.21029 0.97584 1.01424 0.95863 1.20920 0.97497 0.97089 0.94550 1.21284 0.92261 1.07684 1.01527 1.18950 0.84956 0.95350 0.92230 1.86162 1.28521 1.75772 1.31893 1.22450 0.99965 0.92999 0.82626 1.21855 0.96686 1.03004 0.99112 1.22375 1.03342 0.95179 1.02871 1.20422 0.99150 1.02675 0.93077 0.93400 0.93816 0.92179 0.89193 0.96339 0.94559 0.99537 0.93031 0.92974 0.89309 0.77072 0.90592 0.90571 0.85583 0.85728 0.85431 0.90874 0.91319 0.90523 0.91517 0.91023 0.91300 0.91844 0.84829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.28 10.07 37.16 0.37 -1.90 16 2 C 0.06 1.09 5.51 -3.82 -0.02 1.07 16 3 N -0.52 -11.69 3.94 -237.52 -0.94 -12.63 16 4 C 0.20 5.37 4.36 -4.98 -0.02 5.35 16 5 C -0.50 -14.74 8.23 -34.44 -0.28 -15.02 16 6 H 0.06 1.83 7.31 -52.49 -0.38 1.44 16 7 C 0.05 1.59 5.46 -17.82 -0.10 1.50 16 8 N -0.90 -27.91 13.29 55.43 0.74 -27.17 16 9 Si 0.90 22.63 29.54 -169.99 -5.02 17.61 16 10 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 11 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 12 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 13 C 0.04 0.68 5.30 -4.98 -0.03 0.65 16 14 C 0.51 9.60 7.41 -10.99 -0.08 9.52 16 15 O -0.50 -11.96 15.54 5.55 0.09 -11.87 16 16 N -0.74 -10.34 5.55 -61.47 -0.34 -10.68 16 17 C 0.16 2.12 5.80 -5.19 -0.03 2.09 16 18 C -0.06 -0.66 5.25 -104.64 -0.55 -1.21 16 19 C -0.14 -1.32 9.70 -39.56 -0.38 -1.70 16 20 C -0.08 -0.68 10.04 -39.60 -0.40 -1.08 16 21 C -0.21 -1.81 8.31 -39.43 -0.33 -2.14 16 22 C 0.13 1.37 6.57 -39.22 -0.26 1.12 16 23 O -0.31 -3.23 9.81 -19.44 -0.19 -3.42 16 24 C 0.08 0.53 2.86 -26.73 -0.08 0.46 16 25 C -0.15 -0.86 9.56 37.16 0.36 -0.50 16 26 C -0.18 -1.08 9.23 37.16 0.34 -0.74 16 27 C -0.13 -1.53 9.64 -39.43 -0.38 -1.91 16 28 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.04 0.63 6.67 -51.93 -0.35 0.28 16 30 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 31 H 0.09 1.95 6.58 -51.93 -0.34 1.61 16 32 H 0.02 0.33 8.00 -51.93 -0.42 -0.08 16 33 H 0.04 1.11 6.94 -51.93 -0.36 0.75 16 34 H -0.01 -0.37 8.12 -51.93 -0.42 -0.80 16 35 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 36 H 0.05 0.90 7.99 -51.93 -0.41 0.48 16 37 H 0.09 1.31 6.44 -51.92 -0.33 0.98 16 38 H 0.40 4.44 8.46 -40.82 -0.35 4.10 16 39 H 0.08 1.00 8.09 -51.93 -0.42 0.58 16 40 H 0.08 1.11 8.08 -51.93 -0.42 0.69 16 41 H 0.13 1.04 8.06 -52.49 -0.42 0.62 16 42 H 0.12 0.74 8.06 -52.49 -0.42 0.32 16 43 H 0.13 0.85 5.63 -52.49 -0.30 0.55 16 44 H 0.07 0.44 6.05 -51.93 -0.31 0.13 16 45 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 46 H 0.08 0.29 8.14 -51.93 -0.42 -0.14 16 47 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 48 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 49 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 50 H 0.06 0.41 7.25 -51.93 -0.38 0.04 16 51 H 0.13 1.57 8.06 -52.49 -0.42 1.15 16 LS Contribution 413.35 15.07 6.23 6.23 Total: -1.00 -35.55 413.35 -9.85 -45.40 By element: Atomic # 1 Polarization: 9.54 SS G_CDS: -8.55 Total: 0.99 kcal Atomic # 6 Polarization: -2.60 SS G_CDS: -1.86 Total: -4.46 kcal Atomic # 7 Polarization: -49.94 SS G_CDS: -0.54 Total: -50.48 kcal Atomic # 8 Polarization: -15.18 SS G_CDS: -0.10 Total: -15.29 kcal Atomic # 14 Polarization: 22.63 SS G_CDS: -5.02 Total: 17.61 kcal Total LS contribution 6.23 Total: 6.23 kcal Total: -35.55 -9.85 -45.40 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081513869.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.156 kcal (2) G-P(sol) polarization free energy of solvation -35.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.403 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds