Wall clock time and date at job start Tue Mar 31 2020 18:41:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46907 * 109.46965 * 2 1 4 4 C 1.46896 * 111.00020 * 199.67189 * 3 2 1 5 5 C 1.50697 * 109.47433 * 66.04150 * 4 3 2 6 6 H 1.08001 * 120.00220 * 0.02562 * 5 4 3 7 7 C 1.37877 * 120.00104 * 180.02562 * 5 4 3 8 8 N 1.31512 * 120.00082 * 0.02562 * 7 5 4 9 9 Si 1.86810 * 119.99991 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.46827 * 59.99737 * 9 7 5 11 11 H 1.48495 * 109.46933 * 179.97438 * 9 7 5 12 12 H 1.48497 * 109.46894 * 300.00058 * 9 7 5 13 13 C 1.46895 * 111.00114 * 75.71575 * 3 2 1 14 14 C 1.50694 * 109.47068 * 200.53764 * 13 3 2 15 15 O 1.21284 * 120.00351 * 4.81886 * 14 13 3 16 16 N 1.34779 * 120.00072 * 184.82016 * 14 13 3 17 17 C 1.46496 * 120.00033 * 179.97438 * 16 14 13 18 18 C 1.50707 * 109.47352 * 180.02562 * 17 16 14 19 19 C 1.38289 * 119.96923 * 269.98103 * 18 17 16 20 20 C 1.38238 * 120.10923 * 180.02562 * 19 18 17 21 21 C 1.38175 * 120.05723 * 359.67679 * 20 19 18 22 22 C 1.38714 * 119.93855 * 0.61946 * 21 20 19 23 23 O 1.35904 * 120.05274 * 179.67739 * 22 21 20 24 24 C 1.42898 * 116.99939 * 358.73569 * 23 22 21 25 25 C 1.53002 * 109.46931 * 156.29644 * 24 23 22 26 26 C 1.52999 * 109.47326 * 276.29812 * 24 23 22 27 27 C 1.38125 * 119.97076 * 89.99372 * 18 17 16 28 28 H 1.09004 * 109.46895 * 184.43191 * 1 2 3 29 29 H 1.08996 * 109.47237 * 304.42797 * 1 2 3 30 30 H 1.08991 * 109.47072 * 64.43313 * 1 2 3 31 31 H 1.08996 * 109.47502 * 240.00172 * 2 1 3 32 32 H 1.08997 * 109.47633 * 119.99849 * 2 1 3 33 33 H 1.08996 * 109.47421 * 186.04633 * 4 3 2 34 34 H 1.09001 * 109.47331 * 306.04489 * 4 3 2 35 35 H 0.96998 * 120.00086 * 180.02562 * 8 7 5 36 36 H 1.08999 * 109.47206 * 80.53501 * 13 3 2 37 37 H 1.09007 * 109.47048 * 320.53689 * 13 3 2 38 38 H 0.97002 * 120.00190 * 0.02562 * 16 14 13 39 39 H 1.09001 * 109.47236 * 60.00167 * 17 16 14 40 40 H 1.09003 * 109.47054 * 299.99620 * 17 16 14 41 41 H 1.08001 * 119.94692 * 359.97438 * 19 18 17 42 42 H 1.08001 * 119.97807 * 179.97438 * 20 19 18 43 43 H 1.07997 * 120.02694 * 180.29609 * 21 20 19 44 44 H 1.09004 * 109.46983 * 36.30422 * 24 23 22 45 45 H 1.08996 * 109.46920 * 60.00344 * 25 24 23 46 46 H 1.09003 * 109.46847 * 180.02562 * 25 24 23 47 47 H 1.08993 * 109.47043 * 300.00016 * 25 24 23 48 48 H 1.09003 * 109.47102 * 179.97438 * 26 24 23 49 49 H 1.08996 * 109.47265 * 300.00109 * 26 24 23 50 50 H 1.08995 * 109.46937 * 60.00669 * 26 24 23 51 51 H 1.07994 * 120.02932 * 0.02823 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3851 0.0000 4 6 3.4126 1.4510 -0.4617 5 6 3.4810 1.0465 -1.9117 6 1 2.5797 0.7687 -2.4380 7 6 4.6942 1.0311 -2.5667 8 7 5.7918 1.3689 -1.9258 9 14 4.7788 0.5304 -4.3644 10 1 3.9450 1.4538 -5.1752 11 1 6.1870 0.5969 -4.8310 12 1 4.2715 -0.8570 -4.5162 13 6 1.8761 1.9942 1.3290 14 6 1.8965 3.4953 1.1984 15 8 1.9306 4.0081 0.0998 16 7 1.8770 4.2682 2.3024 17 6 1.8975 5.7275 2.1754 18 6 1.8699 6.3516 3.5469 19 6 0.6598 6.6521 4.1449 20 6 0.6312 7.2251 5.4027 21 6 1.8121 7.4928 6.0682 22 6 3.0273 7.1979 5.4679 23 8 4.1904 7.4663 6.1177 24 6 4.0880 8.0781 7.4050 25 6 5.3509 7.7770 8.2146 26 6 3.9368 9.5917 7.2399 27 6 3.0534 6.6231 4.2053 28 1 -0.3633 -1.0246 0.0794 29 1 -0.3633 0.5810 0.8476 30 1 -0.3633 0.4435 -0.9270 31 1 1.8934 -0.5138 -0.8899 32 1 1.8934 -0.5138 0.8899 33 1 3.7844 2.4695 -0.3507 34 1 4.0252 0.7738 0.1336 35 1 6.6452 1.3585 -2.3867 36 1 2.7001 1.6737 1.9665 37 1 0.9308 1.6809 1.7721 38 1 1.8502 3.8582 3.1811 39 1 1.0256 6.0552 1.6092 40 1 2.8049 6.0343 1.6553 41 1 -0.2644 6.4396 3.6282 42 1 -0.3151 7.4593 5.8676 43 1 1.7891 7.9360 7.0528 44 1 3.2179 7.6809 7.9279 45 1 6.2209 8.1742 7.6918 46 1 5.2725 8.2434 9.1968 47 1 5.4585 6.6988 8.3323 48 1 3.8583 10.0583 8.2218 49 1 4.8068 9.9888 6.7170 50 1 3.0371 9.8061 6.6632 51 1 3.9982 6.3888 3.7376 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000081513869.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:41:58 Heat of formation + Delta-G solvation = -71.748593 kcal Electronic energy + Delta-G solvation = -28196.884838 eV Core-core repulsion = 24288.578857 eV Total energy + Delta-G solvation = -3908.305981 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.40071 -40.70577 -39.01344 -38.03158 -35.75106 -34.75492 -34.17197 -32.53780 -31.66167 -30.80017 -30.01887 -28.24759 -27.66550 -26.16528 -24.25969 -23.70484 -23.48930 -22.14858 -21.35483 -20.99981 -19.18488 -18.58555 -18.00036 -17.22975 -17.07277 -17.03919 -16.82868 -16.35416 -16.21768 -15.61094 -15.53033 -15.39064 -15.02957 -14.95486 -14.45649 -14.25922 -14.13458 -13.89898 -13.81154 -13.78754 -13.62276 -13.23406 -13.14394 -12.98235 -12.77973 -12.73432 -12.60680 -12.58195 -12.49204 -12.34449 -12.16930 -11.90350 -11.77226 -11.61487 -11.46757 -11.28092 -10.81876 -10.59596 -10.08382 -9.91957 -9.17713 -8.95903 -8.19219 -6.27869 0.17671 0.45488 1.37915 1.43446 1.50618 1.76485 2.15187 2.24987 2.41068 2.82975 3.13080 3.38765 3.60467 3.77356 3.88423 3.97680 4.00053 4.03875 4.11203 4.21450 4.27671 4.33717 4.37218 4.41055 4.45950 4.58218 4.66871 4.68701 4.70224 4.78220 4.80271 4.85189 4.89532 5.01720 5.03516 5.09084 5.17838 5.20536 5.24863 5.33829 5.36629 5.44125 5.45512 5.49530 5.58581 5.65402 5.78650 6.07574 6.39053 6.48671 6.49570 6.73700 6.86965 7.39781 7.41320 8.92236 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.014460 B = 0.002154 C = 0.001994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1935.952625 B =12993.239170 C =14035.637871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.053 3.947 3 N -0.536 5.536 4 C 0.216 3.784 5 C -0.518 4.518 6 H 0.060 0.940 7 C -0.003 4.003 8 N -0.937 5.937 9 Si 0.970 3.030 10 H -0.274 1.274 11 H -0.281 1.281 12 H -0.261 1.261 13 C 0.036 3.964 14 C 0.509 3.491 15 O -0.561 6.561 16 N -0.717 5.717 17 C 0.166 3.834 18 C -0.065 4.065 19 C -0.140 4.140 20 C -0.075 4.075 21 C -0.202 4.202 22 C 0.120 3.880 23 O -0.333 6.333 24 C 0.067 3.933 25 C -0.149 4.149 26 C -0.177 4.177 27 C -0.156 4.156 28 H 0.077 0.923 29 H 0.063 0.937 30 H 0.044 0.956 31 H 0.060 0.940 32 H 0.035 0.965 33 H -0.005 1.005 34 H -0.036 1.036 35 H 0.263 0.737 36 H 0.063 0.937 37 H 0.132 0.868 38 H 0.413 0.587 39 H 0.077 0.923 40 H 0.052 0.948 41 H 0.140 0.860 42 H 0.158 0.842 43 H 0.152 0.848 44 H 0.088 0.912 45 H 0.059 0.941 46 H 0.101 0.899 47 H 0.059 0.941 48 H 0.095 0.905 49 H 0.057 0.943 50 H 0.058 0.942 51 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.835 12.899 25.927 30.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.074 4.074 3 N -0.261 5.261 4 C 0.090 3.910 5 C -0.556 4.556 6 H 0.078 0.922 7 C -0.201 4.201 8 N -0.578 5.578 9 Si 0.794 3.206 10 H -0.199 1.199 11 H -0.207 1.207 12 H -0.186 1.186 13 C -0.095 4.095 14 C 0.296 3.704 15 O -0.438 6.438 16 N -0.372 5.372 17 C 0.042 3.958 18 C -0.065 4.065 19 C -0.159 4.159 20 C -0.093 4.093 21 C -0.220 4.220 22 C 0.075 3.925 23 O -0.248 6.248 24 C 0.011 3.989 25 C -0.206 4.206 26 C -0.234 4.234 27 C -0.175 4.175 28 H 0.096 0.904 29 H 0.082 0.918 30 H 0.063 0.937 31 H 0.079 0.921 32 H 0.054 0.946 33 H 0.013 0.987 34 H -0.019 1.019 35 H 0.072 0.928 36 H 0.080 0.920 37 H 0.150 0.850 38 H 0.249 0.751 39 H 0.095 0.905 40 H 0.070 0.930 41 H 0.158 0.842 42 H 0.175 0.825 43 H 0.170 0.830 44 H 0.106 0.894 45 H 0.078 0.922 46 H 0.120 0.880 47 H 0.078 0.922 48 H 0.114 0.886 49 H 0.076 0.924 50 H 0.077 0.923 51 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -10.704 13.517 24.713 30.133 hybrid contribution 1.275 -0.557 -0.171 1.402 sum -9.428 12.960 24.543 29.312 Atomic orbital electron populations 1.21711 0.93236 1.02118 1.01858 1.22075 0.96847 0.87917 1.00567 1.61673 1.22833 1.18717 1.22846 1.19289 0.83306 0.93714 0.94669 1.21412 0.93296 1.44236 0.96683 0.92179 1.25954 0.95183 0.95566 1.03373 1.70089 0.99001 1.49966 1.38722 0.85427 0.77043 0.79219 0.78868 1.19942 1.20655 1.18552 1.22034 1.04226 0.90789 0.92444 1.21094 0.75097 0.90306 0.83912 1.90722 1.49026 1.75777 1.28245 1.45869 1.76335 1.05963 1.09046 1.20060 1.02200 0.79801 0.93713 1.19476 0.93274 0.99169 0.94631 1.21214 0.97168 1.01051 0.96450 1.21289 0.98685 0.95508 0.93786 1.21580 0.91495 1.06603 1.02361 1.19052 0.85900 0.95543 0.92025 1.86146 1.28986 1.76194 1.33443 1.22757 1.01111 0.93531 0.81469 1.21896 0.95849 1.02768 1.00057 1.22361 1.02554 0.94488 1.04016 1.20381 0.98673 1.04311 0.94159 0.90383 0.91815 0.93725 0.92136 0.94635 0.98693 1.01873 0.92814 0.91958 0.84986 0.75099 0.90467 0.93000 0.84167 0.82461 0.83025 0.89420 0.92231 0.88006 0.92190 0.88639 0.92425 0.92328 0.86710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.86 10.07 71.98 0.72 -3.14 16 2 C 0.05 2.06 5.51 86.30 0.48 2.53 16 3 N -0.54 -24.54 3.94 -905.39 -3.57 -28.11 16 4 C 0.22 12.46 4.36 85.56 0.37 12.83 16 5 C -0.52 -31.67 8.23 25.60 0.21 -31.46 16 6 H 0.06 3.61 7.31 -2.91 -0.02 3.59 16 7 C 0.00 -0.21 5.46 84.66 0.46 0.25 16 8 N -0.94 -59.99 13.29 21.45 0.28 -59.71 16 9 Si 0.97 47.24 29.54 68.60 2.03 49.27 16 10 H -0.27 -13.18 7.11 99.48 0.71 -12.47 16 11 H -0.28 -13.25 7.11 99.48 0.71 -12.54 16 12 H -0.26 -11.92 7.11 99.48 0.71 -11.21 16 13 C 0.04 1.29 5.30 85.56 0.45 1.75 16 14 C 0.51 19.57 7.41 87.65 0.65 20.22 16 15 O -0.56 -28.25 15.54 -3.04 -0.05 -28.30 16 16 N -0.72 -20.23 5.55 -466.78 -2.59 -22.82 16 17 C 0.17 4.50 5.80 85.64 0.50 5.00 16 18 C -0.06 -1.41 5.25 -19.88 -0.10 -1.52 16 19 C -0.14 -2.35 9.70 22.28 0.22 -2.14 16 20 C -0.07 -1.00 10.04 22.25 0.22 -0.78 16 21 C -0.20 -3.01 8.31 22.37 0.19 -2.82 16 22 C 0.12 2.48 6.57 22.51 0.15 2.62 16 23 O -0.33 -6.94 9.81 -92.47 -0.91 -7.85 16 24 C 0.07 0.85 2.86 30.59 0.09 0.93 16 25 C -0.15 -1.54 9.56 71.98 0.69 -0.86 16 26 C -0.18 -1.83 9.23 71.98 0.66 -1.17 16 27 C -0.16 -3.69 9.64 22.37 0.22 -3.48 16 28 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 29 H 0.06 1.61 6.67 -2.39 -0.02 1.59 16 30 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 31 H 0.06 2.66 6.58 -2.39 -0.02 2.65 16 32 H 0.04 1.23 8.00 -2.39 -0.02 1.21 16 33 H -0.01 -0.33 6.94 -2.39 -0.02 -0.35 16 34 H -0.04 -2.19 8.12 -2.39 -0.02 -2.21 16 35 H 0.26 15.83 8.31 -92.71 -0.77 15.06 16 36 H 0.06 2.12 7.99 -2.39 -0.02 2.10 16 37 H 0.13 3.51 6.44 -2.38 -0.02 3.49 16 38 H 0.41 8.89 8.46 -92.71 -0.78 8.11 16 39 H 0.08 2.09 8.09 -2.39 -0.02 2.07 16 40 H 0.05 1.66 8.08 -2.39 -0.02 1.64 16 41 H 0.14 1.95 8.06 -2.91 -0.02 1.92 16 42 H 0.16 1.11 8.06 -2.91 -0.02 1.09 16 43 H 0.15 1.48 5.63 -2.91 -0.02 1.46 16 44 H 0.09 0.83 6.05 -2.38 -0.01 0.82 16 45 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 46 H 0.10 0.52 8.14 -2.39 -0.02 0.50 16 47 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 48 H 0.09 0.52 8.14 -2.39 -0.02 0.50 16 49 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 50 H 0.06 0.66 7.25 -2.39 -0.02 0.65 16 51 H 0.11 3.03 8.06 -2.91 -0.02 3.00 16 Total: -1.00 -82.23 413.35 1.50 -80.73 By element: Atomic # 1 Polarization: 17.87 SS G_CDS: 0.13 Total: 18.00 kcal Atomic # 6 Polarization: -7.39 SS G_CDS: 6.17 Total: -1.22 kcal Atomic # 7 Polarization: -104.76 SS G_CDS: -5.88 Total: -110.64 kcal Atomic # 8 Polarization: -35.19 SS G_CDS: -0.95 Total: -36.14 kcal Atomic # 14 Polarization: 47.24 SS G_CDS: 2.03 Total: 49.27 kcal Total: -82.23 1.50 -80.73 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081513869.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.985 kcal (2) G-P(sol) polarization free energy of solvation -82.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.733 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds