Wall clock time and date at job start Tue Mar 31 2020 18:42:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42899 * 109.47319 * 2 1 4 4 C 1.35900 * 117.00234 * 179.97438 * 3 2 1 5 5 C 1.38728 * 120.05435 * 359.72769 * 4 3 2 6 6 C 1.38142 * 119.94364 * 179.69834 * 5 4 3 7 7 C 1.38273 * 120.05530 * 0.59378 * 6 5 4 8 8 C 1.50703 * 119.94591 * 179.69726 * 7 6 5 9 9 N 1.46504 * 109.47070 * 269.98354 * 8 7 6 10 10 C 1.46493 * 120.00132 * 90.00422 * 9 8 7 11 11 C 1.34769 * 119.99855 * 269.99456 * 9 8 7 12 12 O 1.21284 * 120.00117 * 0.02562 * 11 9 8 13 13 C 1.50696 * 120.00148 * 180.02562 * 11 9 8 14 14 N 1.46907 * 109.47430 * 180.02562 * 13 11 9 15 15 C 1.46899 * 110.99642 * 66.04729 * 14 13 11 16 16 C 1.53001 * 109.46927 * 61.46801 * 15 14 13 17 17 C 1.46902 * 110.99859 * 190.00052 * 14 13 11 18 18 C 1.50701 * 109.46520 * 168.39695 * 17 14 13 19 19 H 1.07998 * 120.00169 * 354.95461 * 18 17 14 20 20 C 1.37879 * 119.99501 * 174.96330 * 18 17 14 21 21 N 1.31507 * 120.00280 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 119.99769 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.47562 * 59.99592 * 22 20 18 24 24 H 1.48501 * 109.47108 * 179.97438 * 22 20 18 25 25 H 1.48499 * 109.47236 * 299.99362 * 22 20 18 26 26 C 1.38264 * 120.11042 * 359.68309 * 7 6 5 27 27 C 1.38143 * 120.05436 * 0.02562 * 26 7 6 28 28 H 1.08997 * 109.46848 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47257 * 300.00161 * 1 2 3 30 30 H 1.09001 * 109.46811 * 60.00180 * 1 2 3 31 31 H 1.09001 * 109.47257 * 239.99839 * 2 1 3 32 32 H 1.09001 * 109.46811 * 119.99820 * 2 1 3 33 33 H 1.08005 * 120.03142 * 359.97438 * 5 4 3 34 34 H 1.08004 * 119.97656 * 180.27765 * 6 5 4 35 35 H 1.09003 * 109.46799 * 29.98673 * 8 7 6 36 36 H 1.08994 * 109.46790 * 149.98270 * 8 7 6 37 37 H 1.09002 * 109.47620 * 89.99171 * 10 9 8 38 38 H 1.08991 * 109.47390 * 209.99602 * 10 9 8 39 39 H 1.09009 * 109.47031 * 329.99368 * 10 9 8 40 40 H 1.08997 * 109.47412 * 300.00481 * 13 11 9 41 41 H 1.09003 * 109.47240 * 60.00426 * 13 11 9 42 42 H 1.08997 * 109.46692 * 181.46161 * 15 14 13 43 43 H 1.08998 * 109.47436 * 301.46516 * 15 14 13 44 44 H 1.09004 * 109.46869 * 179.08635 * 16 15 14 45 45 H 1.09000 * 109.47222 * 299.07938 * 16 15 14 46 46 H 1.09002 * 109.47102 * 59.08490 * 16 15 14 47 47 H 1.09000 * 109.47310 * 288.39632 * 17 14 13 48 48 H 1.08999 * 109.47188 * 48.39949 * 17 14 13 49 49 H 0.97001 * 120.00578 * 180.02562 * 21 20 18 50 50 H 1.08000 * 119.97299 * 180.02562 * 26 7 6 51 51 H 1.08001 * 120.02949 * 179.97438 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3537 1.5253 0.0005 5 6 4.1998 0.4260 0.0068 6 6 5.5690 0.6096 0.0010 7 6 6.0963 1.8878 0.0014 8 6 7.5903 2.0853 0.0020 9 7 8.0738 2.1494 1.3835 10 6 8.4819 0.9237 2.0744 11 6 8.1434 3.3360 2.0186 12 8 7.8053 4.3507 1.4468 13 6 8.6413 3.4021 3.4394 14 7 8.6209 4.7965 3.9012 15 6 7.2444 5.3017 3.9895 16 6 6.4596 4.4687 5.0050 17 6 9.3162 4.9353 5.1878 18 6 9.5257 6.3966 5.4904 19 1 9.2514 7.1440 4.7606 20 6 10.0679 6.7795 6.6989 21 7 10.4017 5.8695 7.5877 22 14 10.3270 8.5909 7.0744 23 1 9.0220 9.2981 7.0264 24 1 10.9186 8.7360 8.4287 25 1 11.2458 9.1788 6.0668 26 6 5.2551 2.9851 0.0010 27 6 3.8852 2.8068 0.0007 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8934 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 3.7885 -0.5727 0.0116 34 1 6.2282 -0.2460 0.0013 35 1 8.0673 1.2505 -0.5116 36 1 7.8340 3.0151 -0.5118 37 1 9.5438 0.7466 1.9035 38 1 8.2989 1.0311 3.1434 39 1 7.9066 0.0813 1.6901 40 1 7.9970 2.7986 4.0787 41 1 9.6607 3.0187 3.4854 42 1 7.2596 6.3438 4.3086 43 1 6.7668 5.2278 3.0124 44 1 5.4428 4.8538 5.0825 45 1 6.4306 3.4295 4.6776 46 1 6.9464 4.5296 5.9784 47 1 8.7146 4.4835 5.9765 48 1 10.2821 4.4330 5.1348 49 1 10.7827 6.1388 8.4381 50 1 5.6694 3.9825 0.0010 51 1 3.2285 3.6642 0.0008 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000081513984.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:42:02 Heat of formation + Delta-G solvation = -35.232885 kcal Electronic energy + Delta-G solvation = -29151.180281 eV Core-core repulsion = 25244.457740 eV Total energy + Delta-G solvation = -3906.722541 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.46985 -39.69353 -37.93419 -36.59070 -35.20758 -32.58093 -32.43227 -31.19863 -30.88222 -29.56318 -28.18632 -27.08398 -25.89684 -24.58062 -24.07236 -23.01974 -22.32689 -21.33088 -19.89531 -18.62817 -18.45789 -16.79332 -16.42217 -16.29751 -16.17728 -16.04097 -15.71947 -15.26598 -14.66872 -14.61579 -14.21889 -14.00039 -13.67684 -13.65579 -13.58112 -13.31610 -12.98667 -12.88691 -12.66564 -12.48592 -12.24589 -12.15554 -12.04631 -11.83152 -11.75435 -11.66452 -11.38550 -11.10838 -11.02719 -10.90563 -10.83086 -10.72766 -10.50996 -9.95884 -9.88344 -9.33822 -9.12853 -9.02991 -8.59950 -8.38347 -8.25024 -7.10129 -5.98387 -3.98367 1.20762 1.22222 2.92354 3.01288 3.11225 3.38281 3.41187 3.45732 3.73236 4.46967 4.48484 4.52502 4.65977 4.67631 4.77683 4.84580 4.87181 5.04731 5.08958 5.12162 5.21573 5.24904 5.36590 5.37263 5.38309 5.47693 5.58923 5.60977 5.64244 5.69535 5.79057 5.83318 5.92072 5.97730 6.11656 6.13388 6.17879 6.24977 6.49361 6.53877 6.62290 6.65971 6.75681 7.06774 7.20657 7.31290 7.46303 7.50914 7.87496 8.12565 8.25414 8.53358 8.63379 9.10102 9.65385 11.12298 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.017110 B = 0.002405 C = 0.002260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1636.041961 B =11638.370568 C =12385.314536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.055 3.945 3 O -0.318 6.318 4 C 0.129 3.871 5 C -0.214 4.214 6 C -0.069 4.069 7 C -0.140 4.140 8 C 0.160 3.840 9 N -0.623 5.623 10 C 0.080 3.920 11 C 0.519 3.481 12 O -0.515 6.515 13 C 0.035 3.965 14 N -0.517 5.517 15 C 0.057 3.943 16 C -0.189 4.189 17 C 0.189 3.811 18 C -0.501 4.501 19 H 0.063 0.937 20 C 0.054 3.946 21 N -0.901 5.901 22 Si 0.898 3.102 23 H -0.277 1.277 24 H -0.289 1.289 25 H -0.276 1.276 26 C -0.053 4.053 27 C -0.153 4.153 28 H 0.077 0.923 29 H 0.067 0.933 30 H 0.066 0.934 31 H 0.060 0.940 32 H 0.061 0.939 33 H 0.124 0.876 34 H 0.122 0.878 35 H 0.080 0.920 36 H 0.091 0.909 37 H 0.057 0.943 38 H 0.073 0.927 39 H 0.066 0.934 40 H 0.055 0.945 41 H 0.093 0.907 42 H 0.079 0.921 43 H 0.071 0.929 44 H 0.047 0.953 45 H 0.038 0.962 46 H 0.067 0.933 47 H 0.004 0.996 48 H 0.024 0.976 49 H 0.261 0.739 50 H 0.137 0.863 51 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.959 -17.590 -16.161 27.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.020 4.020 3 O -0.232 6.232 4 C 0.084 3.916 5 C -0.233 4.233 6 C -0.087 4.087 7 C -0.142 4.142 8 C 0.038 3.962 9 N -0.359 5.359 10 C -0.064 4.064 11 C 0.307 3.693 12 O -0.389 6.389 13 C -0.097 4.097 14 N -0.241 5.241 15 C -0.071 4.071 16 C -0.247 4.247 17 C 0.064 3.936 18 C -0.540 4.540 19 H 0.082 0.918 20 C -0.147 4.147 21 N -0.541 5.541 22 Si 0.726 3.274 23 H -0.203 1.203 24 H -0.215 1.215 25 H -0.202 1.202 26 C -0.071 4.071 27 C -0.172 4.172 28 H 0.096 0.904 29 H 0.086 0.914 30 H 0.085 0.915 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.142 0.858 34 H 0.139 0.861 35 H 0.098 0.902 36 H 0.110 0.890 37 H 0.075 0.925 38 H 0.091 0.909 39 H 0.084 0.916 40 H 0.073 0.927 41 H 0.111 0.889 42 H 0.098 0.902 43 H 0.089 0.911 44 H 0.066 0.934 45 H 0.057 0.943 46 H 0.086 0.914 47 H 0.022 0.978 48 H 0.042 0.958 49 H 0.070 0.930 50 H 0.155 0.845 51 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -13.934 -16.608 -16.616 27.314 hybrid contribution -0.184 -0.098 1.078 1.098 sum -14.118 -16.706 -15.538 26.830 Atomic orbital electron populations 1.21779 0.92754 1.02820 1.03608 1.22762 0.95872 0.82106 1.01301 1.86074 1.19263 1.29174 1.88672 1.19023 0.82077 0.94248 0.96262 1.21147 0.94328 0.97788 1.10025 1.20796 0.94145 0.96524 0.97262 1.20196 0.96459 0.93091 1.04455 1.20201 0.89079 1.03500 0.83441 1.48004 1.66437 1.07574 1.13843 1.21771 0.99905 0.86609 0.98101 1.21003 0.77066 0.82210 0.88981 1.90608 1.47252 1.33719 1.67331 1.22005 1.01500 0.94520 0.91627 1.62098 1.15526 1.13649 1.32847 1.22101 0.87647 0.99715 0.97663 1.22411 1.00424 0.99556 1.02345 1.19822 0.92873 0.97766 0.83102 1.21107 1.40457 0.91927 1.00492 0.91833 1.24969 0.95842 0.97690 0.96153 1.69939 1.43620 1.32948 1.07609 0.86562 0.78494 0.85218 0.77148 1.20290 1.21472 1.20176 1.21097 0.91810 0.99623 0.94604 1.20490 0.95375 0.94767 1.06577 0.90399 0.91436 0.91521 0.92137 0.92087 0.85769 0.86052 0.90165 0.89029 0.92481 0.90862 0.91566 0.92745 0.88853 0.90225 0.91059 0.93394 0.94342 0.91405 0.97827 0.95814 0.92979 0.84470 0.85254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.85 10.28 37.16 0.38 -0.47 16 2 C 0.05 0.40 5.46 37.16 0.20 0.60 16 3 O -0.32 -3.48 10.14 -19.42 -0.20 -3.68 16 4 C 0.13 1.50 6.69 -39.22 -0.26 1.23 16 5 C -0.21 -2.13 9.04 -39.44 -0.36 -2.48 16 6 C -0.07 -0.67 9.69 -39.60 -0.38 -1.05 16 7 C -0.14 -1.60 5.46 -104.60 -0.57 -2.17 16 8 C 0.16 1.77 5.53 -5.19 -0.03 1.74 16 9 N -0.62 -7.87 2.86 -182.96 -0.52 -8.40 16 10 C 0.08 0.74 10.24 59.84 0.61 1.35 16 11 C 0.52 8.73 7.39 -10.99 -0.08 8.65 16 12 O -0.52 -10.20 13.42 5.55 0.07 -10.13 16 13 C 0.04 0.63 3.78 -4.97 -0.02 0.61 16 14 N -0.52 -11.63 4.43 -237.51 -1.05 -12.68 16 15 C 0.06 1.21 5.55 -3.82 -0.02 1.19 16 16 C -0.19 -3.61 9.26 37.16 0.34 -3.27 16 17 C 0.19 4.90 4.54 -4.97 -0.02 4.88 16 18 C -0.50 -14.27 8.40 -34.44 -0.29 -14.56 16 19 H 0.06 1.83 7.42 -52.49 -0.39 1.44 16 20 C 0.05 1.55 5.46 -17.82 -0.10 1.45 16 21 N -0.90 -26.69 13.28 55.43 0.74 -25.95 16 22 Si 0.90 22.04 29.54 -169.99 -5.02 17.02 16 23 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 24 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 25 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 26 C -0.05 -0.67 9.69 -39.61 -0.38 -1.06 16 27 C -0.15 -1.89 9.99 -39.43 -0.39 -2.28 16 28 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 29 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.06 0.37 7.68 -51.93 -0.40 -0.03 16 32 H 0.06 0.40 7.65 -51.93 -0.40 0.01 16 33 H 0.12 0.95 6.30 -52.48 -0.33 0.62 16 34 H 0.12 0.88 8.06 -52.48 -0.42 0.46 16 35 H 0.08 0.66 8.01 -51.93 -0.42 0.24 16 36 H 0.09 1.14 7.36 -51.93 -0.38 0.76 16 37 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 38 H 0.07 0.71 6.44 -51.93 -0.33 0.37 16 39 H 0.07 0.47 8.07 -51.92 -0.42 0.05 16 40 H 0.06 0.93 5.32 -51.93 -0.28 0.65 16 41 H 0.09 1.59 7.88 -51.93 -0.41 1.18 16 42 H 0.08 1.84 7.01 -51.93 -0.36 1.48 16 43 H 0.07 1.50 5.86 -51.93 -0.30 1.19 16 44 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 45 H 0.04 0.67 6.35 -51.93 -0.33 0.34 16 46 H 0.07 1.45 6.26 -51.93 -0.32 1.13 16 47 H 0.00 0.11 6.00 -51.93 -0.31 -0.20 16 48 H 0.02 0.65 7.90 -51.93 -0.41 0.24 16 49 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 50 H 0.14 1.89 7.57 -52.49 -0.40 1.49 16 51 H 0.13 1.48 8.06 -52.49 -0.42 1.06 16 LS Contribution 405.64 15.07 6.11 6.11 Total: -1.00 -33.31 405.64 -9.53 -42.83 By element: Atomic # 1 Polarization: 8.79 SS G_CDS: -8.29 Total: 0.50 kcal Atomic # 6 Polarization: -4.27 SS G_CDS: -1.37 Total: -5.63 kcal Atomic # 7 Polarization: -46.19 SS G_CDS: -0.84 Total: -47.03 kcal Atomic # 8 Polarization: -13.68 SS G_CDS: -0.12 Total: -13.81 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -33.31 -9.53 -42.83 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081513984.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.600 kcal (2) G-P(sol) polarization free energy of solvation -33.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.833 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds