Wall clock time and date at job start Tue Mar 31 2020 18:42:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42899 * 109.47319 * 2 1 4 4 C 1.35900 * 117.00234 * 179.97438 * 3 2 1 5 5 C 1.38728 * 120.05435 * 359.72769 * 4 3 2 6 6 C 1.38142 * 119.94364 * 179.69834 * 5 4 3 7 7 C 1.38273 * 120.05530 * 0.59378 * 6 5 4 8 8 C 1.50703 * 119.94591 * 179.69726 * 7 6 5 9 9 N 1.46504 * 109.47070 * 269.98354 * 8 7 6 10 10 C 1.46493 * 120.00132 * 90.00422 * 9 8 7 11 11 C 1.34769 * 119.99855 * 269.99456 * 9 8 7 12 12 O 1.21284 * 120.00117 * 0.02562 * 11 9 8 13 13 C 1.50696 * 120.00148 * 180.02562 * 11 9 8 14 14 N 1.46907 * 109.47430 * 180.02562 * 13 11 9 15 15 C 1.46899 * 110.99642 * 66.04729 * 14 13 11 16 16 C 1.53001 * 109.46927 * 61.46801 * 15 14 13 17 17 C 1.46902 * 110.99859 * 190.00052 * 14 13 11 18 18 C 1.50701 * 109.46520 * 168.39695 * 17 14 13 19 19 H 1.07998 * 120.00169 * 354.95461 * 18 17 14 20 20 C 1.37879 * 119.99501 * 174.96330 * 18 17 14 21 21 N 1.31507 * 120.00280 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 119.99769 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.47562 * 59.99592 * 22 20 18 24 24 H 1.48501 * 109.47108 * 179.97438 * 22 20 18 25 25 H 1.48499 * 109.47236 * 299.99362 * 22 20 18 26 26 C 1.38264 * 120.11042 * 359.68309 * 7 6 5 27 27 C 1.38143 * 120.05436 * 0.02562 * 26 7 6 28 28 H 1.08997 * 109.46848 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47257 * 300.00161 * 1 2 3 30 30 H 1.09001 * 109.46811 * 60.00180 * 1 2 3 31 31 H 1.09001 * 109.47257 * 239.99839 * 2 1 3 32 32 H 1.09001 * 109.46811 * 119.99820 * 2 1 3 33 33 H 1.08005 * 120.03142 * 359.97438 * 5 4 3 34 34 H 1.08004 * 119.97656 * 180.27765 * 6 5 4 35 35 H 1.09003 * 109.46799 * 29.98673 * 8 7 6 36 36 H 1.08994 * 109.46790 * 149.98270 * 8 7 6 37 37 H 1.09002 * 109.47620 * 89.99171 * 10 9 8 38 38 H 1.08991 * 109.47390 * 209.99602 * 10 9 8 39 39 H 1.09009 * 109.47031 * 329.99368 * 10 9 8 40 40 H 1.08997 * 109.47412 * 300.00481 * 13 11 9 41 41 H 1.09003 * 109.47240 * 60.00426 * 13 11 9 42 42 H 1.08997 * 109.46692 * 181.46161 * 15 14 13 43 43 H 1.08998 * 109.47436 * 301.46516 * 15 14 13 44 44 H 1.09004 * 109.46869 * 179.08635 * 16 15 14 45 45 H 1.09000 * 109.47222 * 299.07938 * 16 15 14 46 46 H 1.09002 * 109.47102 * 59.08490 * 16 15 14 47 47 H 1.09000 * 109.47310 * 288.39632 * 17 14 13 48 48 H 1.08999 * 109.47188 * 48.39949 * 17 14 13 49 49 H 0.97001 * 120.00578 * 180.02562 * 21 20 18 50 50 H 1.08000 * 119.97299 * 180.02562 * 26 7 6 51 51 H 1.08001 * 120.02949 * 179.97438 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3537 1.5253 0.0005 5 6 4.1998 0.4260 0.0068 6 6 5.5690 0.6096 0.0010 7 6 6.0963 1.8878 0.0014 8 6 7.5903 2.0853 0.0020 9 7 8.0738 2.1494 1.3835 10 6 8.4819 0.9237 2.0744 11 6 8.1434 3.3360 2.0186 12 8 7.8053 4.3507 1.4468 13 6 8.6413 3.4021 3.4394 14 7 8.6209 4.7965 3.9012 15 6 7.2444 5.3017 3.9895 16 6 6.4596 4.4687 5.0050 17 6 9.3162 4.9353 5.1878 18 6 9.5257 6.3966 5.4904 19 1 9.2514 7.1440 4.7606 20 6 10.0679 6.7795 6.6989 21 7 10.4017 5.8695 7.5877 22 14 10.3270 8.5909 7.0744 23 1 9.0220 9.2981 7.0264 24 1 10.9186 8.7360 8.4287 25 1 11.2458 9.1788 6.0668 26 6 5.2551 2.9851 0.0010 27 6 3.8852 2.8068 0.0007 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8934 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 3.7885 -0.5727 0.0116 34 1 6.2282 -0.2460 0.0013 35 1 8.0673 1.2505 -0.5116 36 1 7.8340 3.0151 -0.5118 37 1 9.5438 0.7466 1.9035 38 1 8.2989 1.0311 3.1434 39 1 7.9066 0.0813 1.6901 40 1 7.9970 2.7986 4.0787 41 1 9.6607 3.0187 3.4854 42 1 7.2596 6.3438 4.3086 43 1 6.7668 5.2278 3.0124 44 1 5.4428 4.8538 5.0825 45 1 6.4306 3.4295 4.6776 46 1 6.9464 4.5296 5.9784 47 1 8.7146 4.4835 5.9765 48 1 10.2821 4.4330 5.1348 49 1 10.7827 6.1388 8.4381 50 1 5.6694 3.9825 0.0010 51 1 3.2285 3.6642 0.0008 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000081513984.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:42:01 Heat of formation + Delta-G solvation = -55.746872 kcal Electronic energy + Delta-G solvation = -29152.069834 eV Core-core repulsion = 25244.457740 eV Total energy + Delta-G solvation = -3907.612094 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.38247 -40.82334 -38.92572 -38.09521 -36.35686 -34.69818 -33.14134 -32.05729 -31.72378 -31.13005 -29.91242 -27.95137 -27.38678 -25.74976 -24.98284 -24.81544 -23.12737 -22.25089 -21.44728 -19.89265 -19.24524 -18.37924 -17.95424 -17.35012 -17.12603 -17.02938 -16.77914 -16.62234 -16.43641 -15.91023 -15.52348 -15.16084 -14.85129 -14.49426 -14.44262 -14.38409 -14.27921 -14.05887 -13.83933 -13.43802 -13.39665 -13.20938 -13.12036 -12.97702 -12.89149 -12.76169 -12.69377 -12.61179 -12.53038 -12.48479 -12.43661 -11.95504 -11.67330 -11.63855 -11.53581 -11.36897 -10.58738 -10.55696 -9.96526 -9.62300 -9.11277 -8.87524 -8.17751 -6.25825 0.35100 0.38927 1.40846 1.43458 1.51401 1.72023 2.07027 2.25191 2.42425 2.85181 3.14370 3.39424 3.68826 3.83859 3.91660 3.96786 4.05167 4.11929 4.18985 4.25767 4.30263 4.35604 4.36145 4.42533 4.44477 4.50411 4.52161 4.62756 4.66863 4.74361 4.85596 4.89714 4.90888 4.92779 4.97648 4.98914 5.08596 5.18676 5.23007 5.30086 5.34102 5.37195 5.48269 5.61059 5.68435 5.69404 5.83330 6.07703 6.36089 6.37021 6.46140 6.67632 6.88969 7.32439 7.42682 8.92077 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.017110 B = 0.002405 C = 0.002260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1636.041961 B =11638.370568 C =12385.314536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.045 3.955 3 O -0.338 6.338 4 C 0.120 3.880 5 C -0.211 4.211 6 C -0.059 4.059 7 C -0.149 4.149 8 C 0.161 3.839 9 N -0.612 5.612 10 C 0.070 3.930 11 C 0.517 3.483 12 O -0.555 6.555 13 C 0.036 3.964 14 N -0.535 5.535 15 C 0.063 3.937 16 C -0.175 4.175 17 C 0.206 3.794 18 C -0.521 4.521 19 H 0.052 0.948 20 C 0.006 3.994 21 N -0.929 5.929 22 Si 0.962 3.038 23 H -0.272 1.272 24 H -0.280 1.280 25 H -0.272 1.272 26 C -0.070 4.070 27 C -0.175 4.175 28 H 0.102 0.898 29 H 0.058 0.942 30 H 0.062 0.938 31 H 0.075 0.925 32 H 0.071 0.929 33 H 0.153 0.847 34 H 0.158 0.842 35 H 0.120 0.880 36 H 0.070 0.930 37 H 0.073 0.927 38 H 0.068 0.932 39 H 0.098 0.902 40 H 0.069 0.931 41 H 0.101 0.899 42 H 0.052 0.948 43 H 0.075 0.925 44 H 0.066 0.934 45 H 0.055 0.945 46 H 0.042 0.958 47 H -0.012 1.012 48 H 0.005 0.995 49 H 0.264 0.736 50 H 0.114 0.886 51 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.364 -20.340 -16.834 30.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.029 4.029 3 O -0.252 6.252 4 C 0.075 3.925 5 C -0.229 4.229 6 C -0.077 4.077 7 C -0.150 4.150 8 C 0.039 3.961 9 N -0.345 5.345 10 C -0.072 4.072 11 C 0.306 3.694 12 O -0.433 6.433 13 C -0.095 4.095 14 N -0.258 5.258 15 C -0.065 4.065 16 C -0.234 4.234 17 C 0.081 3.919 18 C -0.559 4.559 19 H 0.070 0.930 20 C -0.192 4.192 21 N -0.570 5.570 22 Si 0.787 3.213 23 H -0.197 1.197 24 H -0.205 1.205 25 H -0.197 1.197 26 C -0.089 4.089 27 C -0.193 4.193 28 H 0.120 0.880 29 H 0.077 0.923 30 H 0.081 0.919 31 H 0.094 0.906 32 H 0.089 0.911 33 H 0.170 0.830 34 H 0.176 0.824 35 H 0.138 0.862 36 H 0.088 0.912 37 H 0.092 0.908 38 H 0.087 0.913 39 H 0.117 0.883 40 H 0.086 0.914 41 H 0.119 0.881 42 H 0.071 0.929 43 H 0.093 0.907 44 H 0.085 0.915 45 H 0.074 0.926 46 H 0.061 0.939 47 H 0.006 0.994 48 H 0.024 0.976 49 H 0.073 0.927 50 H 0.132 0.868 51 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -14.349 -19.414 -17.309 29.705 hybrid contribution -0.122 0.638 1.217 1.379 sum -14.471 -18.776 -16.092 28.651 Atomic orbital electron populations 1.21819 0.91759 1.04218 1.02999 1.23076 0.96752 0.80650 1.02435 1.86062 1.18997 1.31600 1.88584 1.19155 0.82790 0.94360 0.96199 1.21486 0.94311 0.98471 1.08641 1.21143 0.94584 0.96628 0.95369 1.20247 0.96254 0.93501 1.05000 1.20344 0.89319 1.04081 0.82347 1.47985 1.64891 1.07268 1.14403 1.22077 1.01551 0.85788 0.97768 1.20727 0.77108 0.83169 0.88428 1.90600 1.49295 1.35460 1.67934 1.22043 1.02539 0.92030 0.92938 1.61925 1.16101 1.16963 1.30848 1.21973 0.87575 0.98610 0.98324 1.22254 1.00733 1.00298 1.00104 1.19460 0.92014 0.96137 0.84337 1.21363 1.40821 0.93079 1.00671 0.93011 1.25775 0.95363 1.02153 0.95892 1.70038 1.44037 1.34909 1.07975 0.85544 0.78590 0.79876 0.77249 1.19699 1.20475 1.19705 1.21006 0.92369 0.99347 0.96177 1.20528 0.95321 0.95566 1.07934 0.87958 0.92274 0.91927 0.90633 0.91125 0.82955 0.82439 0.86210 0.91200 0.90821 0.91296 0.88342 0.91356 0.88055 0.92900 0.90701 0.91478 0.92585 0.93898 0.99433 0.97649 0.92688 0.86838 0.85931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.42 10.28 71.98 0.74 -0.68 16 2 C 0.05 0.56 5.46 71.98 0.39 0.95 16 3 O -0.34 -7.10 10.14 -92.42 -0.94 -8.04 16 4 C 0.12 2.67 6.69 22.51 0.15 2.82 16 5 C -0.21 -3.53 9.04 22.36 0.20 -3.33 16 6 C -0.06 -0.93 9.69 22.26 0.22 -0.72 16 7 C -0.15 -3.15 5.46 -19.85 -0.11 -3.26 16 8 C 0.16 3.24 5.53 85.63 0.47 3.71 16 9 N -0.61 -14.27 2.86 -851.15 -2.43 -16.70 16 10 C 0.07 1.05 10.24 127.77 1.31 2.36 16 11 C 0.52 17.28 7.39 87.66 0.65 17.93 16 12 O -0.56 -22.64 13.42 -3.04 -0.04 -22.69 16 13 C 0.04 1.28 3.78 85.55 0.32 1.60 16 14 N -0.53 -24.68 4.43 -905.36 -4.01 -28.69 16 15 C 0.06 2.78 5.55 86.30 0.48 3.25 16 16 C -0.18 -6.74 9.26 71.98 0.67 -6.07 16 17 C 0.21 11.04 4.54 85.56 0.39 11.43 16 18 C -0.52 -30.50 8.40 25.60 0.21 -30.29 16 19 H 0.05 3.09 7.42 -2.91 -0.02 3.07 16 20 C 0.01 0.37 5.46 84.66 0.46 0.83 16 21 N -0.93 -55.68 13.28 21.45 0.28 -55.40 16 22 Si 0.96 45.63 29.54 68.60 2.03 47.66 16 23 H -0.27 -12.57 7.11 99.48 0.71 -11.86 16 24 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 25 H -0.27 -12.63 7.11 99.48 0.71 -11.92 16 26 C -0.07 -1.84 9.69 22.25 0.22 -1.63 16 27 C -0.17 -4.44 9.99 22.37 0.22 -4.22 16 28 H 0.10 0.46 8.14 -2.39 -0.02 0.44 16 29 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 30 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 31 H 0.08 0.70 7.68 -2.39 -0.02 0.68 16 32 H 0.07 0.73 7.65 -2.39 -0.02 0.71 16 33 H 0.15 1.65 6.30 -2.91 -0.02 1.63 16 34 H 0.16 1.34 8.06 -2.91 -0.02 1.32 16 35 H 0.12 1.48 8.01 -2.39 -0.02 1.46 16 36 H 0.07 1.74 7.36 -2.39 -0.02 1.72 16 37 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 38 H 0.07 1.13 6.44 -2.39 -0.02 1.11 16 39 H 0.10 0.89 8.07 -2.38 -0.02 0.87 16 40 H 0.07 2.26 5.32 -2.39 -0.01 2.25 16 41 H 0.10 3.43 7.88 -2.39 -0.02 3.41 16 42 H 0.05 2.56 7.01 -2.39 -0.02 2.54 16 43 H 0.07 3.25 5.86 -2.39 -0.01 3.24 16 44 H 0.07 2.29 8.14 -2.38 -0.02 2.27 16 45 H 0.06 1.93 6.35 -2.39 -0.02 1.91 16 46 H 0.04 1.86 6.26 -2.39 -0.01 1.85 16 47 H -0.01 -0.67 6.00 -2.39 -0.01 -0.68 16 48 H 0.01 0.31 7.90 -2.39 -0.02 0.29 16 49 H 0.26 14.94 8.31 -92.71 -0.77 14.17 16 50 H 0.11 3.44 7.57 -2.91 -0.02 3.41 16 51 H 0.12 3.08 8.06 -2.91 -0.02 3.05 16 Total: -1.00 -74.93 405.64 2.80 -72.12 By element: Atomic # 1 Polarization: 16.12 SS G_CDS: 0.91 Total: 17.03 kcal Atomic # 6 Polarization: -12.30 SS G_CDS: 7.00 Total: -5.30 kcal Atomic # 7 Polarization: -94.63 SS G_CDS: -6.15 Total: -100.78 kcal Atomic # 8 Polarization: -29.75 SS G_CDS: -0.98 Total: -30.73 kcal Atomic # 14 Polarization: 45.63 SS G_CDS: 2.03 Total: 47.66 kcal Total: -74.93 2.80 -72.12 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081513984.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.378 kcal (2) G-P(sol) polarization free energy of solvation -74.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.125 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds