Wall clock time and date at job start Tue Mar 31 2020 18:41:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42895 * 109.46891 * 2 1 4 4 C 1.42905 * 114.00075 * 180.02562 * 3 2 1 5 5 C 1.50696 * 109.47191 * 179.97438 * 4 3 2 6 6 C 1.38244 * 119.99533 * 90.00022 * 5 4 3 7 7 C 1.38236 * 119.99548 * 180.02562 * 6 5 4 8 8 C 1.38239 * 119.99995 * 359.97438 * 7 6 5 9 9 C 1.50707 * 119.99618 * 179.97438 * 8 7 6 10 10 N 1.46500 * 109.46510 * 90.00559 * 9 8 7 11 11 C 1.34781 * 119.99501 * 179.97438 * 10 9 8 12 12 O 1.21283 * 120.00042 * 0.02562 * 11 10 9 13 13 C 1.50700 * 120.00110 * 179.97438 * 11 10 9 14 14 N 1.46894 * 109.47379 * 180.02562 * 13 11 10 15 15 C 1.46903 * 110.99617 * 66.04911 * 14 13 11 16 16 C 1.53000 * 109.47489 * 60.60773 * 15 14 13 17 17 C 1.46900 * 111.00080 * 189.99779 * 14 13 11 18 18 C 1.50701 * 109.46992 * 164.62003 * 17 14 13 19 19 H 1.07997 * 120.00252 * 1.03655 * 18 17 14 20 20 C 1.37880 * 120.00025 * 181.03193 * 18 17 14 21 21 N 1.31517 * 119.99890 * 179.97438 * 20 18 17 22 22 Si 1.86796 * 119.99818 * 0.02562 * 20 18 17 23 23 H 1.48506 * 109.47503 * 89.99582 * 22 20 18 24 24 H 1.48504 * 109.47168 * 209.99759 * 22 20 18 25 25 H 1.48501 * 109.47108 * 329.99566 * 22 20 18 26 26 C 1.38233 * 119.99889 * 0.26063 * 8 7 6 27 27 C 1.38227 * 120.00195 * 270.01926 * 5 4 3 28 28 H 1.09000 * 109.47093 * 60.00830 * 1 2 3 29 29 H 1.09003 * 109.46977 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47132 * 300.00206 * 1 2 3 31 31 H 1.08998 * 109.46829 * 239.99365 * 2 1 3 32 32 H 1.09005 * 109.46655 * 119.99350 * 2 1 3 33 33 H 1.09000 * 109.47014 * 59.99072 * 4 3 2 34 34 H 1.08998 * 109.46574 * 299.99881 * 4 3 2 35 35 H 1.07993 * 120.00074 * 359.97438 * 6 5 4 36 36 H 1.07994 * 119.99958 * 179.97438 * 7 6 5 37 37 H 1.08994 * 109.47339 * 330.00958 * 9 8 7 38 38 H 1.08996 * 109.47005 * 210.00058 * 9 8 7 39 39 H 0.97002 * 120.00626 * 359.97438 * 10 9 8 40 40 H 1.09002 * 109.47206 * 300.00839 * 13 11 10 41 41 H 1.09004 * 109.46829 * 60.00093 * 13 11 10 42 42 H 1.09001 * 109.46765 * 180.60233 * 15 14 13 43 43 H 1.08991 * 109.47527 * 300.60350 * 15 14 13 44 44 H 1.09003 * 109.46770 * 298.23739 * 16 15 14 45 45 H 1.09009 * 109.47054 * 58.23474 * 16 15 14 46 46 H 1.08995 * 109.47449 * 178.23615 * 16 15 14 47 47 H 1.08997 * 109.47302 * 284.62167 * 17 14 13 48 48 H 1.08999 * 109.46986 * 44.62662 * 17 14 13 49 49 H 0.96998 * 119.99774 * 180.02562 * 21 20 18 50 50 H 1.08000 * 119.99317 * 179.72270 * 26 8 7 51 51 H 1.08003 * 120.00360 * 0.02562 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4309 1.4602 -0.0006 5 6 3.8194 2.9162 -0.0012 6 6 3.9980 3.5843 1.1958 7 6 4.3539 4.9201 1.1953 8 6 4.5316 5.5875 -0.0021 9 6 4.9190 7.0440 -0.0026 10 7 6.3794 7.1607 -0.0027 11 6 6.9581 8.3779 -0.0036 12 8 6.2698 9.3766 -0.0039 13 6 8.4602 8.4982 -0.0031 14 7 8.8379 9.9177 -0.0037 15 6 8.4347 10.5702 1.2492 16 6 9.1350 9.8896 2.4270 17 6 10.2786 10.0791 -0.2414 18 6 10.5696 11.5112 -0.6093 19 1 9.7674 12.2334 -0.6450 20 6 11.8602 11.8997 -0.9002 21 7 12.1141 13.1494 -1.2217 22 14 13.2477 10.6506 -0.8389 23 1 13.4023 10.0164 -2.1728 24 1 14.5125 11.3336 -0.4660 25 1 12.9315 9.6086 0.1708 26 6 4.3482 4.9206 -1.1990 27 6 3.9967 3.5837 -1.1985 28 1 -0.3633 0.5137 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 3.8333 0.9766 -0.8907 34 1 3.8340 0.9765 0.8892 35 1 3.8588 3.0629 2.1313 36 1 4.4931 5.4422 2.1304 37 1 4.5160 7.5274 0.8872 38 1 4.5159 7.5268 -0.8928 39 1 6.9299 6.3620 -0.0021 40 1 8.8631 8.0157 0.8874 41 1 8.8637 8.0141 -0.8925 42 1 8.7167 11.6226 1.2178 43 1 7.3549 10.4869 1.3711 44 1 8.8288 8.8446 2.4772 45 1 10.2149 9.9455 2.2893 46 1 8.8603 10.3935 3.3536 47 1 10.8276 9.8176 0.6632 48 1 10.5879 9.4247 -1.0563 49 1 13.0220 13.4226 -1.4267 50 1 4.4827 5.4434 -2.1344 51 1 3.8565 3.0620 -2.1337 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000081514150.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:41:53 Heat of formation + Delta-G solvation = -49.049499 kcal Electronic energy + Delta-G solvation = -27625.265493 eV Core-core repulsion = 23717.943818 eV Total energy + Delta-G solvation = -3907.321674 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.17631 -39.42001 -38.24966 -36.78564 -34.96216 -32.79314 -32.47731 -31.30920 -31.26928 -29.87989 -28.95975 -27.55575 -25.48892 -24.11066 -23.27394 -23.10891 -22.79024 -21.16873 -20.53311 -19.31311 -17.31356 -17.06726 -16.73864 -16.65483 -16.46899 -15.94161 -15.83382 -15.42666 -15.15740 -14.65898 -14.39086 -14.21157 -14.03441 -13.82402 -13.60282 -13.42290 -13.30214 -13.06361 -12.72602 -12.56632 -12.52265 -12.41896 -11.94578 -11.89399 -11.73152 -11.58755 -11.41301 -11.33453 -11.32747 -10.96550 -10.64388 -10.53716 -10.13099 -10.12360 -9.88780 -9.47095 -9.27052 -9.26097 -9.00460 -8.93748 -8.52843 -7.26802 -6.00515 -3.96971 0.76855 1.06255 2.95200 2.96032 3.28961 3.36116 3.36698 3.38606 3.71696 4.30704 4.37548 4.44039 4.49393 4.53616 4.64782 4.72772 4.73633 4.85664 4.88021 4.89401 5.11369 5.11997 5.17822 5.20484 5.30874 5.39950 5.41391 5.51660 5.59979 5.62693 5.65154 5.69673 5.72328 5.82694 5.97075 5.99928 6.08337 6.18939 6.26652 6.37854 6.47948 6.49818 6.59748 6.68855 6.87678 6.97028 7.11109 7.53803 7.65976 7.94562 8.06374 8.52308 8.70938 9.11581 9.60717 11.12925 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.026294 B = 0.001693 C = 0.001660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1064.620662 B =16531.867002 C =16865.184310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.056 3.944 3 O -0.383 6.383 4 C 0.103 3.897 5 C -0.088 4.088 6 C -0.100 4.100 7 C -0.103 4.103 8 C -0.096 4.096 9 C 0.162 3.838 10 N -0.737 5.737 11 C 0.515 3.485 12 O -0.515 6.515 13 C 0.030 3.970 14 N -0.506 5.506 15 C 0.053 3.947 16 C -0.191 4.191 17 C 0.158 3.842 18 C -0.503 4.503 19 H 0.082 0.918 20 C 0.067 3.933 21 N -0.900 5.900 22 Si 0.874 3.126 23 H -0.276 1.276 24 H -0.286 1.286 25 H -0.269 1.269 26 C -0.102 4.102 27 C -0.100 4.100 28 H 0.063 0.937 29 H 0.071 0.929 30 H 0.063 0.937 31 H 0.048 0.952 32 H 0.048 0.952 33 H 0.058 0.942 34 H 0.058 0.942 35 H 0.124 0.876 36 H 0.127 0.873 37 H 0.074 0.926 38 H 0.076 0.924 39 H 0.398 0.602 40 H 0.057 0.943 41 H 0.096 0.904 42 H 0.085 0.915 43 H 0.076 0.924 44 H 0.040 0.960 45 H 0.063 0.937 46 H 0.052 0.948 47 H -0.002 1.002 48 H 0.021 0.979 49 H 0.263 0.737 50 H 0.128 0.872 51 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.106 -29.225 4.633 35.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.021 4.021 3 O -0.303 6.303 4 C 0.027 3.973 5 C -0.089 4.089 6 C -0.118 4.118 7 C -0.122 4.122 8 C -0.096 4.096 9 C 0.038 3.962 10 N -0.392 5.392 11 C 0.302 3.698 12 O -0.388 6.388 13 C -0.102 4.102 14 N -0.229 5.229 15 C -0.075 4.075 16 C -0.250 4.250 17 C 0.032 3.968 18 C -0.542 4.542 19 H 0.100 0.900 20 C -0.134 4.134 21 N -0.540 5.540 22 Si 0.701 3.299 23 H -0.202 1.202 24 H -0.212 1.212 25 H -0.194 1.194 26 C -0.121 4.121 27 C -0.118 4.118 28 H 0.082 0.918 29 H 0.090 0.910 30 H 0.082 0.918 31 H 0.067 0.933 32 H 0.066 0.934 33 H 0.076 0.924 34 H 0.076 0.924 35 H 0.142 0.858 36 H 0.145 0.855 37 H 0.092 0.908 38 H 0.094 0.906 39 H 0.232 0.768 40 H 0.075 0.925 41 H 0.114 0.886 42 H 0.103 0.897 43 H 0.094 0.906 44 H 0.059 0.941 45 H 0.082 0.918 46 H 0.071 0.929 47 H 0.015 0.985 48 H 0.039 0.961 49 H 0.073 0.927 50 H 0.146 0.854 51 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -19.831 -27.928 4.182 34.507 hybrid contribution 1.745 -1.752 0.609 2.547 sum -18.085 -29.679 4.791 35.084 Atomic orbital electron populations 1.21749 0.93588 1.02289 1.03299 1.22487 0.95769 0.83717 1.00101 1.87992 1.20407 1.26465 1.95420 1.21302 0.81891 0.93134 1.00955 1.19596 1.00714 0.94879 0.93689 1.21031 0.98839 0.94451 0.97501 1.21111 0.98921 0.94324 0.97823 1.19997 1.00532 0.95604 0.93502 1.20123 0.81465 0.91373 1.03212 1.46114 1.06483 1.08711 1.77913 1.20930 0.91086 0.82462 0.75336 1.90668 1.64884 1.36133 1.47146 1.22024 0.91280 0.94517 1.02357 1.61927 1.19137 1.07707 1.34168 1.22185 0.99549 0.99942 0.85845 1.22441 1.02527 0.99889 1.00097 1.20289 0.82699 0.98783 0.95006 1.21019 0.94629 0.92989 1.45537 0.90017 1.24890 0.98353 0.95046 0.95081 1.69897 1.20479 1.16108 1.47495 0.86894 0.82271 0.81996 0.78742 1.20231 1.21242 1.19361 1.21133 0.98746 0.94308 0.97900 1.21038 0.98768 0.94445 0.97515 0.91772 0.91042 0.91779 0.93339 0.93357 0.92377 0.92398 0.85846 0.85542 0.90770 0.90625 0.76813 0.92549 0.88622 0.89659 0.90553 0.94071 0.91843 0.92906 0.98470 0.96106 0.92729 0.85421 0.85799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.73 10.28 37.16 0.38 -0.35 16 2 C 0.06 0.31 6.66 37.16 0.25 0.56 16 3 O -0.38 -3.19 10.33 -35.23 -0.36 -3.55 16 4 C 0.10 0.69 6.06 36.00 0.22 0.91 16 5 C -0.09 -0.72 5.51 -104.63 -0.58 -1.29 16 6 C -0.10 -0.79 9.70 -39.58 -0.38 -1.18 16 7 C -0.10 -0.86 9.70 -39.58 -0.38 -1.25 16 8 C -0.10 -0.86 5.25 -104.62 -0.55 -1.41 16 9 C 0.16 1.72 5.80 -5.19 -0.03 1.69 16 10 N -0.74 -8.51 5.55 -61.47 -0.34 -8.85 16 11 C 0.52 8.22 7.55 -10.98 -0.08 8.13 16 12 O -0.51 -10.28 14.31 5.55 0.08 -10.20 16 13 C 0.03 0.50 5.21 -4.98 -0.03 0.47 16 14 N -0.51 -10.93 4.40 -237.52 -1.04 -11.98 16 15 C 0.05 1.08 5.58 -3.82 -0.02 1.06 16 16 C -0.19 -3.33 9.26 37.16 0.34 -2.99 16 17 C 0.16 3.81 3.66 -4.98 -0.02 3.79 16 18 C -0.50 -14.50 9.11 -34.44 -0.31 -14.81 16 19 H 0.08 2.61 7.70 -52.49 -0.40 2.21 16 20 C 0.07 1.96 5.47 -17.82 -0.10 1.87 16 21 N -0.90 -27.87 13.96 55.43 0.77 -27.10 16 22 Si 0.87 21.36 27.45 -169.99 -4.67 16.70 16 23 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 24 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 25 H -0.27 -6.25 6.57 56.52 0.37 -5.88 16 26 C -0.10 -0.87 9.70 -39.59 -0.38 -1.25 16 27 C -0.10 -0.80 9.70 -39.59 -0.38 -1.18 16 28 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.07 0.22 8.14 -51.93 -0.42 -0.20 16 30 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 31 H 0.05 0.22 8.14 -51.93 -0.42 -0.20 16 32 H 0.05 0.22 8.14 -51.93 -0.42 -0.21 16 33 H 0.06 0.32 8.09 -51.93 -0.42 -0.10 16 34 H 0.06 0.31 8.09 -51.93 -0.42 -0.11 16 35 H 0.12 0.78 8.06 -52.49 -0.42 0.36 16 36 H 0.13 0.93 8.06 -52.49 -0.42 0.50 16 37 H 0.07 0.82 8.08 -51.93 -0.42 0.40 16 38 H 0.08 0.86 8.08 -51.93 -0.42 0.44 16 39 H 0.40 3.64 8.46 -40.82 -0.35 3.30 16 40 H 0.06 0.84 6.05 -51.93 -0.31 0.52 16 41 H 0.10 1.46 7.87 -51.93 -0.41 1.05 16 42 H 0.09 1.95 7.15 -51.93 -0.37 1.58 16 43 H 0.08 1.55 5.87 -51.93 -0.30 1.25 16 44 H 0.04 0.63 6.38 -51.93 -0.33 0.30 16 45 H 0.06 1.21 6.18 -51.92 -0.32 0.89 16 46 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 47 H 0.00 -0.05 5.01 -51.93 -0.26 -0.31 16 48 H 0.02 0.49 7.19 -51.93 -0.37 0.12 16 49 H 0.26 7.60 8.31 -40.82 -0.34 7.27 16 50 H 0.13 0.98 8.06 -52.49 -0.42 0.55 16 51 H 0.12 0.81 8.06 -52.48 -0.42 0.38 16 LS Contribution 410.58 15.07 6.19 6.19 Total: -1.00 -34.55 410.58 -9.94 -44.49 By element: Atomic # 1 Polarization: 10.04 SS G_CDS: -8.51 Total: 1.54 kcal Atomic # 6 Polarization: -5.17 SS G_CDS: -2.06 Total: -7.23 kcal Atomic # 7 Polarization: -47.31 SS G_CDS: -0.61 Total: -47.93 kcal Atomic # 8 Polarization: -13.47 SS G_CDS: -0.28 Total: -13.75 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -4.67 Total: 16.70 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -34.55 -9.94 -44.49 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081514150.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.561 kcal (2) G-P(sol) polarization free energy of solvation -34.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.489 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds