Wall clock time and date at job start Tue Mar 31 2020 18:41:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42895 * 109.46891 * 2 1 4 4 C 1.42905 * 114.00075 * 180.02562 * 3 2 1 5 5 C 1.50696 * 109.47191 * 179.97438 * 4 3 2 6 6 C 1.38244 * 119.99533 * 90.00022 * 5 4 3 7 7 C 1.38236 * 119.99548 * 180.02562 * 6 5 4 8 8 C 1.38239 * 119.99995 * 359.97438 * 7 6 5 9 9 C 1.50707 * 119.99618 * 179.97438 * 8 7 6 10 10 N 1.46500 * 109.46510 * 90.00559 * 9 8 7 11 11 C 1.34781 * 119.99501 * 179.97438 * 10 9 8 12 12 O 1.21283 * 120.00042 * 0.02562 * 11 10 9 13 13 C 1.50700 * 120.00110 * 179.97438 * 11 10 9 14 14 N 1.46894 * 109.47379 * 180.02562 * 13 11 10 15 15 C 1.46903 * 110.99617 * 66.04911 * 14 13 11 16 16 C 1.53000 * 109.47489 * 60.60773 * 15 14 13 17 17 C 1.46900 * 111.00080 * 189.99779 * 14 13 11 18 18 C 1.50701 * 109.46992 * 164.62003 * 17 14 13 19 19 H 1.07997 * 120.00252 * 1.03655 * 18 17 14 20 20 C 1.37880 * 120.00025 * 181.03193 * 18 17 14 21 21 N 1.31517 * 119.99890 * 179.97438 * 20 18 17 22 22 Si 1.86796 * 119.99818 * 0.02562 * 20 18 17 23 23 H 1.48506 * 109.47503 * 89.99582 * 22 20 18 24 24 H 1.48504 * 109.47168 * 209.99759 * 22 20 18 25 25 H 1.48501 * 109.47108 * 329.99566 * 22 20 18 26 26 C 1.38233 * 119.99889 * 0.26063 * 8 7 6 27 27 C 1.38227 * 120.00195 * 270.01926 * 5 4 3 28 28 H 1.09000 * 109.47093 * 60.00830 * 1 2 3 29 29 H 1.09003 * 109.46977 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47132 * 300.00206 * 1 2 3 31 31 H 1.08998 * 109.46829 * 239.99365 * 2 1 3 32 32 H 1.09005 * 109.46655 * 119.99350 * 2 1 3 33 33 H 1.09000 * 109.47014 * 59.99072 * 4 3 2 34 34 H 1.08998 * 109.46574 * 299.99881 * 4 3 2 35 35 H 1.07993 * 120.00074 * 359.97438 * 6 5 4 36 36 H 1.07994 * 119.99958 * 179.97438 * 7 6 5 37 37 H 1.08994 * 109.47339 * 330.00958 * 9 8 7 38 38 H 1.08996 * 109.47005 * 210.00058 * 9 8 7 39 39 H 0.97002 * 120.00626 * 359.97438 * 10 9 8 40 40 H 1.09002 * 109.47206 * 300.00839 * 13 11 10 41 41 H 1.09004 * 109.46829 * 60.00093 * 13 11 10 42 42 H 1.09001 * 109.46765 * 180.60233 * 15 14 13 43 43 H 1.08991 * 109.47527 * 300.60350 * 15 14 13 44 44 H 1.09003 * 109.46770 * 298.23739 * 16 15 14 45 45 H 1.09009 * 109.47054 * 58.23474 * 16 15 14 46 46 H 1.08995 * 109.47449 * 178.23615 * 16 15 14 47 47 H 1.08997 * 109.47302 * 284.62167 * 17 14 13 48 48 H 1.08999 * 109.46986 * 44.62662 * 17 14 13 49 49 H 0.96998 * 119.99774 * 180.02562 * 21 20 18 50 50 H 1.08000 * 119.99317 * 179.72270 * 26 8 7 51 51 H 1.08003 * 120.00360 * 0.02562 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4309 1.4602 -0.0006 5 6 3.8194 2.9162 -0.0012 6 6 3.9980 3.5843 1.1958 7 6 4.3539 4.9201 1.1953 8 6 4.5316 5.5875 -0.0021 9 6 4.9190 7.0440 -0.0026 10 7 6.3794 7.1607 -0.0027 11 6 6.9581 8.3779 -0.0036 12 8 6.2698 9.3766 -0.0039 13 6 8.4602 8.4982 -0.0031 14 7 8.8379 9.9177 -0.0037 15 6 8.4347 10.5702 1.2492 16 6 9.1350 9.8896 2.4270 17 6 10.2786 10.0791 -0.2414 18 6 10.5696 11.5112 -0.6093 19 1 9.7674 12.2334 -0.6450 20 6 11.8602 11.8997 -0.9002 21 7 12.1141 13.1494 -1.2217 22 14 13.2477 10.6506 -0.8389 23 1 13.4023 10.0164 -2.1728 24 1 14.5125 11.3336 -0.4660 25 1 12.9315 9.6086 0.1708 26 6 4.3482 4.9206 -1.1990 27 6 3.9967 3.5837 -1.1985 28 1 -0.3633 0.5137 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 3.8333 0.9766 -0.8907 34 1 3.8340 0.9765 0.8892 35 1 3.8588 3.0629 2.1313 36 1 4.4931 5.4422 2.1304 37 1 4.5160 7.5274 0.8872 38 1 4.5159 7.5268 -0.8928 39 1 6.9299 6.3620 -0.0021 40 1 8.8631 8.0157 0.8874 41 1 8.8637 8.0141 -0.8925 42 1 8.7167 11.6226 1.2178 43 1 7.3549 10.4869 1.3711 44 1 8.8288 8.8446 2.4772 45 1 10.2149 9.9455 2.2893 46 1 8.8603 10.3935 3.3536 47 1 10.8276 9.8176 0.6632 48 1 10.5879 9.4247 -1.0563 49 1 13.0220 13.4226 -1.4267 50 1 4.4827 5.4434 -2.1344 51 1 3.8565 3.0620 -2.1337 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000081514150.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:41:52 Heat of formation + Delta-G solvation = -73.173500 kcal Electronic energy + Delta-G solvation = -27626.311588 eV Core-core repulsion = 23717.943818 eV Total energy + Delta-G solvation = -3908.367770 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.09694 -40.40330 -38.83208 -38.27774 -35.98641 -34.65331 -33.48967 -31.90996 -31.87334 -31.35916 -30.55111 -28.58820 -26.82479 -24.99779 -24.59806 -23.71198 -23.66133 -21.97247 -21.78544 -20.84366 -18.89404 -18.12491 -17.68685 -17.43770 -17.28938 -17.03482 -16.80084 -16.34934 -16.28281 -16.02633 -15.85869 -15.48343 -14.91687 -14.63564 -14.61846 -14.42190 -14.37512 -14.13602 -13.84298 -13.57645 -13.49258 -13.27984 -13.18023 -13.13019 -12.88251 -12.66925 -12.42836 -12.34587 -12.31154 -12.20576 -11.91544 -11.89868 -11.89495 -11.56827 -11.45430 -10.75346 -10.72312 -10.57589 -10.08321 -9.86817 -9.73640 -8.88302 -8.23708 -6.27167 0.12771 0.45511 1.37678 1.40454 1.50768 1.70699 2.13026 2.38312 2.62893 3.09291 3.13031 3.35916 3.62919 3.81638 3.92891 3.97854 4.09038 4.12083 4.19690 4.22541 4.27430 4.32912 4.42773 4.43994 4.51204 4.51371 4.54954 4.56004 4.60981 4.70873 4.75098 4.76939 4.86996 4.93944 4.98607 5.03405 5.10476 5.12433 5.24020 5.26840 5.38237 5.41121 5.48703 5.58814 5.59576 5.61716 5.99116 6.00661 6.25317 6.35901 6.55993 6.74487 6.79388 7.33938 7.36458 8.93868 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.026294 B = 0.001693 C = 0.001660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1064.620662 B =16531.867002 C =16865.184310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.050 3.950 3 O -0.409 6.409 4 C 0.101 3.899 5 C -0.094 4.094 6 C -0.105 4.105 7 C -0.106 4.106 8 C -0.102 4.102 9 C 0.166 3.834 10 N -0.714 5.714 11 C 0.518 3.482 12 O -0.564 6.564 13 C 0.029 3.971 14 N -0.535 5.535 15 C 0.058 3.942 16 C -0.180 4.180 17 C 0.170 3.830 18 C -0.515 4.515 19 H 0.026 0.974 20 C 0.003 3.997 21 N -0.954 5.954 22 Si 0.953 3.047 23 H -0.264 1.264 24 H -0.285 1.285 25 H -0.242 1.242 26 C -0.108 4.108 27 C -0.106 4.106 28 H 0.055 0.945 29 H 0.089 0.911 30 H 0.055 0.945 31 H 0.059 0.941 32 H 0.059 0.941 33 H 0.070 0.930 34 H 0.071 0.929 35 H 0.139 0.861 36 H 0.135 0.865 37 H 0.069 0.931 38 H 0.065 0.935 39 H 0.414 0.586 40 H 0.086 0.914 41 H 0.114 0.886 42 H 0.043 0.957 43 H 0.076 0.924 44 H 0.068 0.932 45 H 0.049 0.951 46 H 0.068 0.932 47 H 0.008 0.992 48 H 0.034 0.966 49 H 0.266 0.734 50 H 0.132 0.868 51 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.564 -33.635 5.456 38.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.026 4.026 3 O -0.329 6.329 4 C 0.026 3.974 5 C -0.095 4.095 6 C -0.123 4.123 7 C -0.125 4.125 8 C -0.102 4.102 9 C 0.043 3.957 10 N -0.368 5.368 11 C 0.305 3.695 12 O -0.441 6.441 13 C -0.102 4.102 14 N -0.259 5.259 15 C -0.070 4.070 16 C -0.238 4.238 17 C 0.043 3.957 18 C -0.553 4.553 19 H 0.044 0.956 20 C -0.193 4.193 21 N -0.595 5.595 22 Si 0.776 3.224 23 H -0.189 1.189 24 H -0.211 1.211 25 H -0.165 1.165 26 C -0.127 4.127 27 C -0.124 4.124 28 H 0.074 0.926 29 H 0.108 0.892 30 H 0.075 0.925 31 H 0.077 0.923 32 H 0.078 0.922 33 H 0.088 0.912 34 H 0.089 0.911 35 H 0.157 0.843 36 H 0.153 0.847 37 H 0.088 0.912 38 H 0.084 0.916 39 H 0.250 0.750 40 H 0.103 0.897 41 H 0.132 0.868 42 H 0.061 0.939 43 H 0.094 0.906 44 H 0.087 0.913 45 H 0.068 0.932 46 H 0.087 0.913 47 H 0.026 0.974 48 H 0.052 0.948 49 H 0.074 0.926 50 H 0.150 0.850 51 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -19.315 -32.410 5.015 38.061 hybrid contribution 1.407 -0.380 0.334 1.495 sum -17.908 -32.791 5.349 37.743 Atomic orbital electron populations 1.21779 0.93391 1.03280 1.02482 1.22660 0.96010 0.82800 1.01138 1.87952 1.21224 1.28125 1.95638 1.21390 0.81423 0.92396 1.02227 1.19874 1.00110 0.95772 0.93721 1.21253 0.98462 0.94357 0.98250 1.21244 0.98694 0.94645 0.97897 1.19822 1.01797 0.94489 0.94135 1.20090 0.80495 0.92644 1.02516 1.45888 1.07206 1.07920 1.75817 1.20830 0.90749 0.82962 0.74963 1.90662 1.65674 1.37990 1.49810 1.22121 0.91914 0.91605 1.04553 1.61694 1.17594 1.11329 1.35277 1.22016 0.99786 0.98049 0.87175 1.22314 1.01015 1.01319 0.99164 1.20033 0.84609 0.95479 0.95545 1.21268 0.93541 0.94873 1.45664 0.95599 1.25931 1.01631 0.97411 0.94358 1.70084 1.21409 1.18905 1.49060 0.85635 0.77588 0.79289 0.79911 1.18927 1.21082 1.16506 1.21246 0.98784 0.94691 0.97965 1.21240 0.98534 0.94321 0.98289 0.92604 0.89179 0.92547 0.92307 0.92242 0.91180 0.91063 0.84339 0.84678 0.91233 0.91644 0.74971 0.89692 0.86775 0.93865 0.90581 0.91330 0.93229 0.91278 0.97407 0.94835 0.92551 0.84979 0.84501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 10.28 71.98 0.74 -0.52 16 2 C 0.05 0.46 6.66 71.98 0.48 0.94 16 3 O -0.41 -6.12 10.33 -148.98 -1.54 -7.66 16 4 C 0.10 1.14 6.06 71.23 0.43 1.57 16 5 C -0.09 -1.33 5.51 -19.87 -0.11 -1.44 16 6 C -0.11 -1.44 9.70 22.27 0.22 -1.23 16 7 C -0.11 -1.57 9.70 22.27 0.22 -1.35 16 8 C -0.10 -1.67 5.25 -19.86 -0.10 -1.78 16 9 C 0.17 3.35 5.80 85.64 0.50 3.85 16 10 N -0.71 -15.06 5.55 -466.78 -2.59 -17.65 16 11 C 0.52 15.82 7.55 87.66 0.66 16.49 16 12 O -0.56 -22.67 14.31 -3.04 -0.04 -22.72 16 13 C 0.03 0.89 5.21 85.56 0.45 1.34 16 14 N -0.54 -22.99 4.40 -905.38 -3.98 -26.97 16 15 C 0.06 2.40 5.58 86.30 0.48 2.88 16 16 C -0.18 -5.94 9.26 71.98 0.67 -5.27 16 17 C 0.17 8.03 3.66 85.56 0.31 8.35 16 18 C -0.52 -30.67 9.11 25.60 0.23 -30.44 16 19 H 0.03 1.77 7.70 -2.91 -0.02 1.75 16 20 C 0.00 0.18 5.47 84.65 0.46 0.65 16 21 N -0.95 -61.09 13.96 21.45 0.30 -60.79 16 22 Si 0.95 43.51 27.45 68.60 1.88 45.39 16 23 H -0.26 -11.52 7.11 99.48 0.71 -10.81 16 24 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 25 H -0.24 -9.92 6.57 99.48 0.65 -9.27 16 26 C -0.11 -1.68 9.70 22.27 0.22 -1.46 16 27 C -0.11 -1.51 9.70 22.27 0.22 -1.29 16 28 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 29 H 0.09 0.38 8.14 -2.39 -0.02 0.36 16 30 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 31 H 0.06 0.41 8.14 -2.39 -0.02 0.39 16 32 H 0.06 0.40 8.14 -2.38 -0.02 0.38 16 33 H 0.07 0.59 8.09 -2.39 -0.02 0.57 16 34 H 0.07 0.59 8.09 -2.39 -0.02 0.57 16 35 H 0.14 1.42 8.06 -2.91 -0.02 1.39 16 36 H 0.14 1.70 8.06 -2.91 -0.02 1.68 16 37 H 0.07 1.50 8.08 -2.39 -0.02 1.48 16 38 H 0.07 1.48 8.08 -2.39 -0.02 1.46 16 39 H 0.41 6.31 8.46 -92.71 -0.78 5.52 16 40 H 0.09 2.17 6.05 -2.39 -0.01 2.15 16 41 H 0.11 3.10 7.87 -2.38 -0.02 3.08 16 42 H 0.04 2.11 7.15 -2.39 -0.02 2.09 16 43 H 0.08 3.16 5.87 -2.39 -0.01 3.15 16 44 H 0.07 1.88 6.38 -2.39 -0.02 1.86 16 45 H 0.05 1.78 6.18 -2.38 -0.01 1.77 16 46 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 47 H 0.01 0.38 5.01 -2.39 -0.01 0.37 16 48 H 0.03 1.50 7.19 -2.39 -0.02 1.49 16 49 H 0.27 15.80 8.31 -92.71 -0.77 15.03 16 50 H 0.13 1.86 8.06 -2.91 -0.02 1.83 16 51 H 0.14 1.51 8.06 -2.91 -0.02 1.49 16 Total: -1.00 -78.59 410.58 0.17 -78.42 By element: Atomic # 1 Polarization: 20.63 SS G_CDS: 0.08 Total: 20.71 kcal Atomic # 6 Polarization: -14.80 SS G_CDS: 6.06 Total: -8.73 kcal Atomic # 7 Polarization: -99.14 SS G_CDS: -6.27 Total: -105.41 kcal Atomic # 8 Polarization: -28.79 SS G_CDS: -1.58 Total: -30.37 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 1.88 Total: 45.39 kcal Total: -78.59 0.17 -78.42 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081514150.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.247 kcal (2) G-P(sol) polarization free energy of solvation -78.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.421 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds