Wall clock time and date at job start Tue Mar 31 2020 18:41:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46894 * 109.47381 * 2 1 4 4 C 1.46906 * 111.00074 * 288.15453 * 3 2 1 5 5 C 1.52997 * 109.47276 * 160.28502 * 4 3 2 6 6 C 1.50692 * 109.47349 * 185.08915 * 5 4 3 7 7 O 1.20830 * 119.99890 * 0.02562 * 6 5 4 8 8 O 1.34230 * 120.00572 * 179.97438 * 6 5 4 9 9 C 1.45198 * 117.00307 * 179.97438 * 8 6 5 10 10 C 1.46900 * 111.00135 * 164.19598 * 3 2 1 11 11 C 1.50697 * 109.46974 * 293.95726 * 10 3 2 12 12 C 1.38281 * 119.92579 * 89.99858 * 11 10 3 13 13 C 1.38101 * 120.07366 * 180.02562 * 12 11 10 14 14 C 1.38916 * 119.92813 * 0.02562 * 13 12 11 15 15 N 1.39672 * 120.07848 * 179.97438 * 14 13 12 16 16 C 1.46503 * 119.99895 * 0.02562 * 15 14 13 17 17 C 1.46497 * 120.00307 * 180.02562 * 15 14 13 18 18 C 1.50699 * 109.47258 * 89.99992 * 17 15 14 19 19 H 1.08004 * 119.99796 * 0.02562 * 18 17 15 20 20 C 1.37873 * 120.00381 * 180.02562 * 18 17 15 21 21 N 1.31516 * 119.99610 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 120.00522 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.46663 * 359.97438 * 22 20 18 24 24 H 1.48496 * 109.47027 * 119.99569 * 22 20 18 25 25 H 1.48493 * 109.46935 * 239.99838 * 22 20 18 26 26 C 1.38915 * 119.84574 * 0.24931 * 14 13 12 27 27 C 1.38098 * 119.92559 * 359.49150 * 26 14 13 28 28 H 1.08998 * 109.47430 * 59.31923 * 1 2 3 29 29 H 1.09002 * 109.47236 * 179.31443 * 1 2 3 30 30 H 1.09004 * 109.47282 * 299.31838 * 1 2 3 31 31 H 1.09002 * 109.46485 * 240.00100 * 2 1 3 32 32 H 1.08995 * 109.46853 * 120.00358 * 2 1 3 33 33 H 1.08995 * 109.46900 * 280.28345 * 4 3 2 34 34 H 1.08994 * 109.46991 * 40.28301 * 4 3 2 35 35 H 1.09007 * 109.47094 * 305.09014 * 5 4 3 36 36 H 1.09004 * 109.47228 * 65.09002 * 5 4 3 37 37 H 1.09002 * 109.46763 * 179.97438 * 9 8 6 38 38 H 1.08994 * 109.47105 * 300.00087 * 9 8 6 39 39 H 1.09002 * 109.47151 * 60.00352 * 9 8 6 40 40 H 1.08999 * 109.46752 * 173.95481 * 10 3 2 41 41 H 1.09002 * 109.47062 * 53.95620 * 10 3 2 42 42 H 1.07997 * 119.96228 * 0.04655 * 12 11 10 43 43 H 1.08006 * 120.04016 * 179.97438 * 13 12 11 44 44 H 1.09000 * 109.46945 * 269.99658 * 16 15 14 45 45 H 1.08999 * 109.47015 * 29.99574 * 16 15 14 46 46 H 1.08997 * 109.47163 * 149.99561 * 16 15 14 47 47 H 1.09001 * 109.47126 * 210.00523 * 17 15 14 48 48 H 1.09005 * 109.46852 * 330.00364 * 17 15 14 49 49 H 0.97004 * 119.99932 * 180.02562 * 21 20 18 50 50 H 1.07997 * 120.03339 * 179.72255 * 26 14 13 51 51 H 1.08002 * 119.96370 * 180.24843 * 27 26 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.7923 2.0237 -1.3032 5 6 1.8431 3.5443 -1.1416 6 6 1.4868 4.2007 -2.4504 7 8 1.2193 3.5220 -3.4136 8 8 1.4657 5.5395 -2.5461 9 6 1.1145 6.1026 -3.8375 10 6 3.4393 1.4414 0.3735 11 6 3.5993 1.0044 1.8068 12 6 3.8127 -0.3296 2.1016 13 6 3.9593 -0.7335 3.4141 14 6 3.8916 0.2020 4.4388 15 7 4.0388 -0.2030 5.7674 16 6 4.2655 -1.6159 6.0816 17 6 3.9666 0.7849 6.8467 18 6 2.5389 0.9193 7.3100 19 1 1.7629 0.3276 6.8470 20 6 2.2231 1.7975 8.3248 21 7 3.1679 2.5183 8.8883 22 14 0.4535 1.9636 8.8996 23 1 -0.4111 1.0501 8.1102 24 1 0.3652 1.6088 10.3389 25 1 -0.0003 3.3642 8.7062 26 6 3.6714 1.5406 4.1394 27 6 3.5310 1.9384 2.8245 28 1 -0.3634 0.5243 -0.8838 29 1 -0.3634 -1.0276 -0.0123 30 1 -0.3634 0.5032 0.8961 31 1 1.8932 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 2.5655 1.7068 -2.0030 34 1 0.8144 1.7314 -1.6854 35 1 1.1317 3.8522 -0.3752 36 1 2.8483 3.8450 -0.8461 37 1 1.1347 7.1908 -3.7769 38 1 1.8307 5.7667 -4.5873 39 1 0.1139 5.7732 -4.1176 40 1 3.8040 2.4625 0.2620 41 1 4.0122 0.7781 -0.2746 42 1 3.8652 -1.0565 1.3046 43 1 4.1255 -1.7757 3.6438 44 1 3.3070 -2.1141 6.2269 45 1 4.8002 -2.0899 5.2584 46 1 4.8580 -1.6949 6.9930 47 1 4.5898 0.4593 7.6796 48 1 4.3223 1.7484 6.4817 49 1 2.9458 3.1360 9.6025 50 1 3.6137 2.2698 4.9340 51 1 3.3638 2.9795 2.5908 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000092380190.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:41:28 Heat of formation + Delta-G solvation = -66.946910 kcal Electronic energy + Delta-G solvation = -28598.834385 eV Core-core repulsion = 24690.736620 eV Total energy + Delta-G solvation = -3908.097764 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.51974 -40.56181 -38.97426 -37.57473 -36.90487 -34.75444 -33.21837 -32.32528 -31.82773 -30.19565 -29.54681 -28.52931 -27.12890 -25.83061 -24.76531 -23.81837 -23.01397 -21.97952 -21.34845 -20.85724 -18.68078 -18.62987 -18.11082 -17.68357 -17.59085 -16.89268 -16.60448 -16.33610 -16.11666 -15.48505 -15.43059 -15.28570 -14.97613 -14.62574 -14.58099 -14.31209 -14.10692 -13.99602 -13.94550 -13.54932 -13.25614 -13.16853 -13.05540 -13.00873 -12.74277 -12.67678 -12.63361 -12.53590 -12.43042 -12.20767 -12.01787 -11.84581 -11.78620 -11.67964 -11.59567 -11.49004 -11.33438 -10.62759 -10.35825 -9.59524 -9.20701 -8.34204 -7.76671 -6.35356 0.76135 0.87909 1.16175 1.36767 1.38725 1.50812 1.74012 2.35838 2.66507 2.94847 3.07699 3.37743 3.76968 3.97193 4.08168 4.08670 4.15783 4.26263 4.29778 4.31098 4.33476 4.42326 4.45931 4.55380 4.58762 4.68078 4.71322 4.72815 4.75674 4.81322 4.82756 4.89034 4.93221 4.96383 5.04689 5.09229 5.16351 5.20815 5.22580 5.37252 5.38755 5.41342 5.62722 5.70908 5.73616 5.96762 6.09577 6.17456 6.21054 6.27884 6.53115 6.71243 6.85441 6.97544 7.36486 8.84869 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.011665 B = 0.002510 C = 0.002283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2399.852976 B =11151.058815 C =12261.238960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.046 3.954 3 N -0.542 5.542 4 C 0.071 3.929 5 C -0.107 4.107 6 C 0.467 3.533 7 O -0.541 6.541 8 O -0.366 6.366 9 C 0.028 3.972 10 C 0.109 3.891 11 C -0.152 4.152 12 C -0.062 4.062 13 C -0.217 4.217 14 C 0.211 3.789 15 N -0.632 5.632 16 C 0.100 3.900 17 C 0.266 3.734 18 C -0.538 4.538 19 H 0.047 0.953 20 C 0.012 3.988 21 N -0.926 5.926 22 Si 0.960 3.040 23 H -0.272 1.272 24 H -0.275 1.275 25 H -0.276 1.276 26 C -0.216 4.216 27 C -0.053 4.053 28 H 0.055 0.945 29 H 0.066 0.934 30 H 0.047 0.953 31 H 0.042 0.958 32 H 0.077 0.923 33 H 0.044 0.956 34 H 0.078 0.922 35 H 0.121 0.879 36 H 0.122 0.878 37 H 0.128 0.872 38 H 0.062 0.938 39 H 0.061 0.939 40 H 0.090 0.910 41 H 0.050 0.950 42 H 0.138 0.862 43 H 0.130 0.870 44 H 0.037 0.963 45 H 0.084 0.916 46 H 0.060 0.940 47 H 0.009 0.991 48 H 0.012 0.988 49 H 0.267 0.733 50 H 0.094 0.906 51 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.051 -0.020 -23.704 23.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.081 4.081 3 N -0.266 5.266 4 C -0.057 4.057 5 C -0.145 4.145 6 C 0.312 3.688 7 O -0.431 6.431 8 O -0.283 6.283 9 C -0.065 4.065 10 C -0.017 4.017 11 C -0.154 4.154 12 C -0.081 4.081 13 C -0.240 4.240 14 C 0.106 3.894 15 N -0.340 5.340 16 C -0.043 4.043 17 C 0.145 3.855 18 C -0.577 4.577 19 H 0.065 0.935 20 C -0.187 4.187 21 N -0.566 5.566 22 Si 0.785 3.215 23 H -0.196 1.196 24 H -0.200 1.200 25 H -0.202 1.202 26 C -0.239 4.239 27 C -0.072 4.072 28 H 0.074 0.926 29 H 0.085 0.915 30 H 0.066 0.934 31 H 0.060 0.940 32 H 0.095 0.905 33 H 0.062 0.938 34 H 0.097 0.903 35 H 0.139 0.861 36 H 0.140 0.860 37 H 0.146 0.854 38 H 0.081 0.919 39 H 0.080 0.920 40 H 0.109 0.891 41 H 0.068 0.932 42 H 0.156 0.844 43 H 0.148 0.852 44 H 0.056 0.944 45 H 0.102 0.898 46 H 0.079 0.921 47 H 0.027 0.973 48 H 0.030 0.970 49 H 0.076 0.924 50 H 0.112 0.888 51 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -1.337 0.118 -23.311 23.350 hybrid contribution -0.478 -0.049 0.280 0.556 sum -1.816 0.069 -23.031 23.102 Atomic orbital electron populations 1.21758 0.94941 1.01827 1.01670 1.22164 0.96159 0.88486 1.01282 1.61909 1.18073 1.18140 1.28502 1.21797 1.02317 0.92007 0.89607 1.21376 1.06527 0.94862 0.91707 1.24107 0.72516 0.80925 0.91264 1.90655 1.46524 1.64993 1.40957 1.86523 1.80319 1.22904 1.38524 1.23523 1.00934 1.00483 0.81578 1.20921 0.87713 1.01869 0.91218 1.19437 1.07815 0.93227 0.94958 1.20881 0.96616 0.95460 0.95161 1.20749 1.12281 0.98767 0.92215 1.18234 0.92948 0.93592 0.84580 1.46942 1.75927 1.07848 1.03319 1.21576 1.00157 0.81196 1.01364 1.18789 0.95227 0.87198 0.84315 1.21783 0.94626 1.22942 1.18310 0.93504 1.25759 1.01581 0.95024 0.96307 1.70040 1.34270 1.26258 1.26077 0.85476 0.79812 0.78087 0.78128 1.19617 1.20013 1.20200 1.20786 1.10809 0.94800 0.97458 1.20794 0.95879 0.99709 0.90804 0.92581 0.91509 0.93368 0.94004 0.90480 0.93798 0.90347 0.86080 0.85985 0.85364 0.91873 0.92050 0.89140 0.93228 0.84443 0.85212 0.94401 0.89776 0.92098 0.97287 0.97016 0.92412 0.88799 0.85551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.83 9.99 71.98 0.72 -2.11 16 2 C 0.05 0.93 5.52 86.30 0.48 1.41 16 3 N -0.54 -11.01 4.38 -900.82 -3.95 -14.96 16 4 C 0.07 1.26 4.18 86.30 0.36 1.62 16 5 C -0.11 -1.69 5.84 29.84 0.17 -1.52 16 6 C 0.47 8.97 7.96 71.23 0.57 9.54 16 7 O -0.54 -13.20 15.67 21.95 0.34 -12.85 16 8 O -0.37 -6.41 10.57 -51.42 -0.54 -6.96 16 9 C 0.03 0.33 10.56 113.37 1.20 1.53 16 10 C 0.11 2.20 4.94 85.56 0.42 2.63 16 11 C -0.15 -4.08 4.94 -19.84 -0.10 -4.18 16 12 C -0.06 -1.66 7.83 22.25 0.17 -1.49 16 13 C -0.22 -6.97 9.21 22.40 0.21 -6.76 16 14 C 0.21 8.49 6.55 38.22 0.25 8.74 16 15 N -0.63 -27.59 2.99 -726.55 -2.17 -29.77 16 16 C 0.10 3.47 10.23 127.77 1.31 4.78 16 17 C 0.27 14.00 4.95 85.63 0.42 14.43 16 18 C -0.54 -30.39 9.39 25.60 0.24 -30.15 16 19 H 0.05 2.71 7.81 -2.91 -0.02 2.68 16 20 C 0.01 0.70 5.46 84.65 0.46 1.16 16 21 N -0.93 -54.43 13.29 21.45 0.28 -54.15 16 22 Si 0.96 44.37 29.54 68.60 2.03 46.40 16 23 H -0.27 -12.40 7.11 99.48 0.71 -11.70 16 24 H -0.27 -12.23 7.11 99.48 0.71 -11.53 16 25 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 26 C -0.22 -8.85 9.20 22.40 0.21 -8.64 16 27 C -0.05 -1.71 9.69 22.25 0.22 -1.50 16 28 H 0.06 1.03 6.51 -2.39 -0.02 1.01 16 29 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 30 H 0.05 1.10 8.14 -2.38 -0.02 1.09 16 31 H 0.04 0.74 8.05 -2.39 -0.02 0.72 16 32 H 0.08 1.74 5.13 -2.39 -0.01 1.73 16 33 H 0.04 0.78 8.00 -2.39 -0.02 0.76 16 34 H 0.08 1.52 6.04 -2.39 -0.01 1.51 16 35 H 0.12 1.88 8.14 -2.38 -0.02 1.86 16 36 H 0.12 1.56 6.95 -2.38 -0.02 1.54 16 37 H 0.13 0.78 8.14 -2.39 -0.02 0.76 16 38 H 0.06 0.75 8.13 -2.39 -0.02 0.73 16 39 H 0.06 0.75 8.13 -2.39 -0.02 0.73 16 40 H 0.09 1.58 6.66 -2.39 -0.02 1.57 16 41 H 0.05 0.89 8.06 -2.39 -0.02 0.87 16 42 H 0.14 2.83 7.73 -2.91 -0.02 2.80 16 43 H 0.13 3.63 6.14 -2.91 -0.02 3.61 16 44 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 45 H 0.08 2.34 6.20 -2.39 -0.01 2.33 16 46 H 0.06 2.06 7.89 -2.39 -0.02 2.04 16 47 H 0.01 0.50 7.89 -2.39 -0.02 0.49 16 48 H 0.01 0.67 6.21 -2.38 -0.01 0.66 16 49 H 0.27 14.71 8.31 -92.70 -0.77 13.94 16 50 H 0.09 4.48 6.15 -2.91 -0.02 4.47 16 51 H 0.13 3.61 8.06 -2.91 -0.02 3.59 16 Total: -1.00 -68.07 408.97 4.21 -63.86 By element: Atomic # 1 Polarization: 18.03 SS G_CDS: 0.91 Total: 18.94 kcal Atomic # 6 Polarization: -17.82 SS G_CDS: 7.30 Total: -10.52 kcal Atomic # 7 Polarization: -93.04 SS G_CDS: -5.84 Total: -98.87 kcal Atomic # 8 Polarization: -19.61 SS G_CDS: -0.20 Total: -19.81 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 2.03 Total: 46.40 kcal Total: -68.07 4.21 -63.86 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092380190.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.083 kcal (2) G-P(sol) polarization free energy of solvation -68.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.864 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds