Wall clock time and date at job start Tue Mar 31 2020 18:41:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46892 * 109.47349 * 2 1 4 4 C 1.46901 * 110.99845 * 288.15373 * 3 2 1 5 5 C 1.53000 * 109.47178 * 160.28674 * 4 3 2 6 6 C 1.50697 * 109.47360 * 185.08950 * 5 4 3 7 7 O 1.21281 * 119.99911 * 359.97438 * 6 5 4 8 8 N 1.34775 * 120.00391 * 179.97438 * 6 5 4 9 9 C 1.46497 * 119.99628 * 359.97438 * 8 6 5 10 10 C 1.46498 * 120.00178 * 179.97438 * 8 6 5 11 11 C 1.50703 * 109.46960 * 90.00039 * 10 8 6 12 12 H 1.07999 * 120.00232 * 359.97438 * 11 10 8 13 13 C 1.37879 * 119.99776 * 180.02562 * 11 10 8 14 14 N 1.31510 * 119.99985 * 359.97438 * 13 11 10 15 15 Si 1.86803 * 119.99787 * 180.02562 * 13 11 10 16 16 H 1.48499 * 109.47331 * 59.99895 * 15 13 11 17 17 H 1.48504 * 109.46850 * 180.02562 * 15 13 11 18 18 H 1.48502 * 109.46983 * 299.99478 * 15 13 11 19 19 C 1.46904 * 111.00233 * 164.19862 * 3 2 1 20 20 C 1.50699 * 109.46934 * 293.95272 * 19 3 2 21 21 C 1.38264 * 119.94547 * 270.29928 * 20 19 3 22 22 C 1.38148 * 120.05544 * 180.29927 * 21 20 19 23 23 C 1.38728 * 119.94212 * 359.42339 * 22 21 20 24 24 O 1.35900 * 120.05260 * 180.29484 * 23 22 21 25 25 C 1.42902 * 116.99656 * 179.97438 * 24 23 22 26 26 C 1.38729 * 119.89223 * 0.27674 * 23 22 21 27 27 C 1.38150 * 119.94243 * 0.02562 * 26 23 22 28 28 H 1.08992 * 109.47566 * 59.31710 * 1 2 3 29 29 H 1.09001 * 109.47249 * 179.32101 * 1 2 3 30 30 H 1.09006 * 109.46837 * 299.31413 * 1 2 3 31 31 H 1.09005 * 109.46844 * 239.99418 * 2 1 3 32 32 H 1.09008 * 109.47315 * 120.00129 * 2 1 3 33 33 H 1.09005 * 109.46952 * 280.27913 * 4 3 2 34 34 H 1.08999 * 109.47569 * 40.28245 * 4 3 2 35 35 H 1.09002 * 109.47187 * 305.09318 * 5 4 3 36 36 H 1.09006 * 109.47224 * 65.08940 * 5 4 3 37 37 H 1.09003 * 109.47337 * 90.00521 * 9 8 6 38 38 H 1.09005 * 109.47402 * 210.00103 * 9 8 6 39 39 H 1.08996 * 109.47522 * 330.00105 * 9 8 6 40 40 H 1.09003 * 109.46921 * 209.99705 * 10 8 6 41 41 H 1.08999 * 109.47083 * 330.00372 * 10 8 6 42 42 H 0.97006 * 119.99672 * 180.02562 * 14 13 11 43 43 H 1.08998 * 109.46719 * 173.95484 * 19 3 2 44 44 H 1.09003 * 109.47035 * 53.95230 * 19 3 2 45 45 H 1.08005 * 119.97178 * 0.02562 * 21 20 19 46 46 H 1.08004 * 120.02777 * 179.69668 * 22 21 20 47 47 H 1.09008 * 109.47049 * 180.02562 * 25 24 23 48 48 H 1.08998 * 109.47690 * 300.00031 * 25 24 23 49 49 H 1.09008 * 109.47352 * 60.00715 * 25 24 23 50 50 H 1.07998 * 120.03498 * 180.02562 * 26 23 22 51 51 H 1.08000 * 119.97377 * 180.02562 * 27 26 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.7923 2.0236 -1.3032 5 6 1.8430 3.5442 -1.1416 6 6 1.4868 4.2007 -2.4505 7 8 1.2191 3.5194 -3.4175 8 7 1.4656 5.5448 -2.5466 9 6 1.7883 6.3678 -1.3784 10 6 1.1198 6.1829 -3.8191 11 6 -0.3693 6.4069 -3.8805 12 1 -0.9954 6.1038 -3.0544 13 6 -0.9323 6.9977 -4.9918 14 7 -0.1699 7.3663 -5.9979 15 14 -2.7779 7.2760 -5.0675 16 1 -3.1925 8.1552 -3.9449 17 1 -3.1286 7.9216 -6.3581 18 1 -3.4799 5.9718 -4.9602 19 6 3.4393 1.4414 0.3734 20 6 3.5994 1.0045 1.8068 21 6 3.5264 1.9373 2.8249 22 6 3.6790 1.5402 4.1392 23 6 3.8937 0.2026 4.4381 24 8 4.0381 -0.1913 5.7307 25 6 4.2558 -1.5842 5.9639 26 6 3.9603 -0.7322 3.4153 27 6 3.8133 -0.3292 2.1021 28 1 -0.3634 0.5243 -0.8837 29 1 -0.3634 -1.0276 -0.0122 30 1 -0.3633 0.5032 0.8961 31 1 1.8933 -0.5140 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 2.5656 1.7067 -2.0030 34 1 0.8143 1.7313 -1.6855 35 1 1.1317 3.8521 -0.3752 36 1 2.8483 3.8449 -0.8461 37 1 2.8596 6.5682 -1.3598 38 1 1.2434 7.3101 -1.4359 39 1 1.5022 5.8375 -0.4701 40 1 1.6347 7.1405 -3.8972 41 1 1.4245 5.5381 -4.6435 42 1 -0.5660 7.7824 -6.7796 43 1 3.8039 2.4625 0.2619 44 1 4.0122 0.7781 -0.2747 45 1 3.3544 2.9778 2.5920 46 1 3.6268 2.2700 4.9338 47 1 4.3535 -1.7624 7.0349 48 1 3.4110 -2.1539 5.5768 49 1 5.1687 -1.8990 5.4581 50 1 4.1269 -1.7742 3.6453 51 1 3.8647 -1.0566 1.3054 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000092794365.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:41:21 Heat of formation + Delta-G solvation = -43.826793 kcal Electronic energy + Delta-G solvation = -28530.840845 eV Core-core repulsion = 24623.745644 eV Total energy + Delta-G solvation = -3907.095201 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.48464 -39.21112 -38.43423 -36.92806 -34.75989 -32.66798 -31.87976 -31.85402 -31.25293 -29.24119 -27.95137 -27.43927 -25.80444 -25.14174 -23.87475 -22.86516 -22.14907 -21.57599 -20.35152 -18.44237 -18.30348 -16.65344 -16.53219 -16.39713 -16.15706 -16.04692 -15.56967 -15.22885 -14.90975 -14.70439 -14.60508 -14.20492 -14.02341 -13.82325 -13.69897 -13.45124 -12.93088 -12.80872 -12.43353 -12.34111 -12.15200 -12.12059 -11.90449 -11.83271 -11.75048 -11.51597 -11.39976 -11.28048 -11.14881 -11.05823 -10.91039 -10.80395 -10.53628 -10.51325 -10.13141 -9.61187 -9.21589 -8.84927 -8.48564 -8.40805 -8.25321 -7.59793 -6.01660 -4.06280 1.10810 1.14784 2.95081 3.33773 3.37907 3.39233 3.41098 3.50791 3.84126 4.24211 4.46615 4.48366 4.58218 4.65415 4.71536 4.75137 4.97249 5.00985 5.06233 5.12591 5.15003 5.22557 5.28268 5.32791 5.36246 5.43247 5.49644 5.53431 5.58565 5.68691 5.73562 5.78846 5.84090 5.95081 5.96857 6.01416 6.07705 6.12843 6.20739 6.27305 6.27653 6.43476 6.50920 7.02675 7.05233 7.09583 7.10333 7.47433 7.58353 7.94889 8.26687 8.47114 8.93301 9.14659 9.58682 11.06313 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.021817 B = 0.002046 C = 0.001995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1283.077749 B =13683.840859 C =14034.800247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.046 3.954 3 N -0.534 5.534 4 C 0.069 3.931 5 C -0.132 4.132 6 C 0.504 3.496 7 O -0.547 6.547 8 N -0.604 5.604 9 C 0.084 3.916 10 C 0.245 3.755 11 C -0.525 4.525 12 H 0.057 0.943 13 C 0.060 3.940 14 N -0.895 5.895 15 Si 0.898 3.102 16 H -0.277 1.277 17 H -0.286 1.286 18 H -0.276 1.276 19 C 0.093 3.907 20 C -0.108 4.108 21 C -0.057 4.057 22 C -0.152 4.152 23 C 0.122 3.878 24 O -0.320 6.320 25 C 0.028 3.972 26 C -0.209 4.209 27 C -0.075 4.075 28 H 0.059 0.941 29 H 0.054 0.946 30 H 0.061 0.939 31 H 0.032 0.968 32 H 0.076 0.924 33 H 0.042 0.958 34 H 0.087 0.913 35 H 0.095 0.905 36 H 0.081 0.919 37 H 0.043 0.957 38 H 0.072 0.928 39 H 0.059 0.941 40 H 0.031 0.969 41 H 0.043 0.957 42 H 0.263 0.737 43 H 0.085 0.915 44 H 0.041 0.959 45 H 0.132 0.868 46 H 0.130 0.870 47 H 0.098 0.902 48 H 0.055 0.945 49 H 0.054 0.946 50 H 0.125 0.875 51 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.600 -16.357 22.706 29.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.081 4.081 3 N -0.259 5.259 4 C -0.058 4.058 5 C -0.173 4.173 6 C 0.290 3.710 7 O -0.425 6.425 8 N -0.336 5.336 9 C -0.060 4.060 10 C 0.126 3.874 11 C -0.564 4.564 12 H 0.075 0.925 13 C -0.142 4.142 14 N -0.535 5.535 15 Si 0.726 3.274 16 H -0.202 1.202 17 H -0.212 1.212 18 H -0.202 1.202 19 C -0.034 4.034 20 C -0.109 4.109 21 C -0.076 4.076 22 C -0.170 4.170 23 C 0.077 3.923 24 O -0.233 6.233 25 C -0.067 4.067 26 C -0.228 4.228 27 C -0.094 4.094 28 H 0.078 0.922 29 H 0.073 0.927 30 H 0.080 0.920 31 H 0.051 0.949 32 H 0.095 0.905 33 H 0.060 0.940 34 H 0.106 0.894 35 H 0.113 0.887 36 H 0.100 0.900 37 H 0.061 0.939 38 H 0.091 0.909 39 H 0.077 0.923 40 H 0.049 0.951 41 H 0.061 0.939 42 H 0.073 0.927 43 H 0.104 0.896 44 H 0.060 0.940 45 H 0.150 0.850 46 H 0.148 0.852 47 H 0.117 0.883 48 H 0.073 0.927 49 H 0.073 0.927 50 H 0.143 0.857 51 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 10.180 -16.232 22.507 29.558 hybrid contribution -0.551 -0.428 -0.709 0.995 sum 9.629 -16.660 21.798 29.076 Atomic orbital electron populations 1.21789 0.94791 1.01184 1.02871 1.22161 0.96386 0.88936 1.00653 1.62016 1.16283 1.17281 1.30293 1.21875 1.02804 0.93042 0.88113 1.21612 1.03050 0.95541 0.97094 1.20338 0.78231 0.82688 0.89716 1.90660 1.49485 1.62789 1.39572 1.48159 1.66859 1.05197 1.13365 1.21632 0.99429 0.96704 0.88266 1.19270 0.95622 0.92779 0.79774 1.21406 0.92594 1.39483 1.02944 0.92523 1.24943 0.98344 0.95539 0.95349 1.69927 1.35343 1.41402 1.06782 0.86559 0.85277 0.78420 0.77160 1.20246 1.21202 1.20189 1.21047 0.89188 1.01695 0.91486 1.19686 1.02513 0.93250 0.95433 1.20871 0.95894 0.99880 0.90930 1.20448 1.06084 0.93229 0.97273 1.19045 0.96627 0.93744 0.82876 1.86068 1.87018 1.26645 1.23612 1.23040 1.00786 0.79996 1.02900 1.21159 1.09233 0.99233 0.93163 1.20844 0.97492 0.95448 0.95624 0.92183 0.92673 0.91989 0.94946 0.90537 0.93962 0.89444 0.88656 0.90032 0.93880 0.90896 0.92260 0.95101 0.93912 0.92707 0.89635 0.94046 0.85006 0.85245 0.88321 0.92674 0.92714 0.85708 0.86073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.61 9.99 37.16 0.37 -1.24 16 2 C 0.05 0.49 5.52 -3.83 -0.02 0.47 16 3 N -0.53 -6.19 4.38 -236.07 -1.03 -7.23 16 4 C 0.07 0.98 4.18 -3.82 -0.02 0.96 16 5 C -0.13 -1.94 4.29 -27.88 -0.12 -2.06 16 6 C 0.50 10.45 7.67 -10.99 -0.08 10.37 16 7 O -0.55 -13.77 15.50 5.56 0.09 -13.68 16 8 N -0.60 -12.92 2.86 -182.96 -0.52 -13.45 16 9 C 0.08 1.33 10.24 59.85 0.61 1.94 16 10 C 0.24 6.50 5.16 -5.19 -0.03 6.48 16 11 C -0.53 -15.10 9.39 -34.44 -0.32 -15.43 16 12 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 13 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 14 N -0.90 -26.88 13.29 55.43 0.74 -26.15 16 15 Si 0.90 22.10 29.54 -169.99 -5.02 17.08 16 16 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 17 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 18 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 19 C 0.09 0.94 4.94 -4.97 -0.02 0.91 16 20 C -0.11 -1.04 4.94 -104.60 -0.52 -1.56 16 21 C -0.06 -0.54 9.69 -39.60 -0.38 -0.92 16 22 C -0.15 -1.44 9.99 -39.43 -0.39 -1.84 16 23 C 0.12 1.18 6.69 -39.22 -0.26 0.91 16 24 O -0.32 -2.93 10.50 -19.43 -0.20 -3.13 16 25 C 0.03 0.15 9.81 101.05 0.99 1.14 16 26 C -0.21 -1.80 9.04 -39.43 -0.36 -2.15 16 27 C -0.08 -0.67 7.84 -39.60 -0.31 -0.98 16 28 H 0.06 0.74 6.51 -51.93 -0.34 0.40 16 29 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 31 H 0.03 0.35 8.05 -51.93 -0.42 -0.07 16 32 H 0.08 0.75 5.13 -51.92 -0.27 0.48 16 33 H 0.04 0.63 8.00 -51.93 -0.42 0.21 16 34 H 0.09 1.39 6.04 -51.93 -0.31 1.08 16 35 H 0.10 1.32 7.40 -51.93 -0.38 0.94 16 36 H 0.08 1.01 6.92 -51.93 -0.36 0.65 16 37 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 38 H 0.07 1.20 8.07 -51.93 -0.42 0.78 16 39 H 0.06 0.77 6.44 -51.93 -0.33 0.44 16 40 H 0.03 0.83 8.07 -51.93 -0.42 0.41 16 41 H 0.04 1.28 7.42 -51.93 -0.39 0.89 16 42 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 43 H 0.09 0.82 6.66 -51.93 -0.35 0.48 16 44 H 0.04 0.41 8.06 -51.93 -0.42 -0.01 16 45 H 0.13 1.08 8.06 -52.48 -0.42 0.65 16 46 H 0.13 1.08 8.06 -52.48 -0.42 0.65 16 47 H 0.10 0.33 8.14 -51.92 -0.42 -0.09 16 48 H 0.05 0.25 7.66 -51.93 -0.40 -0.15 16 49 H 0.05 0.24 7.66 -51.92 -0.40 -0.16 16 50 H 0.13 0.81 6.30 -52.49 -0.33 0.48 16 51 H 0.12 0.91 7.73 -52.49 -0.41 0.51 16 LS Contribution 409.15 15.07 6.17 6.17 Total: -1.00 -34.26 409.15 -9.19 -43.44 By element: Atomic # 1 Polarization: 6.71 SS G_CDS: -8.43 Total: -1.72 kcal Atomic # 6 Polarization: -0.38 SS G_CDS: -0.96 Total: -1.35 kcal Atomic # 7 Polarization: -46.00 SS G_CDS: -0.82 Total: -46.82 kcal Atomic # 8 Polarization: -16.69 SS G_CDS: -0.12 Total: -16.81 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -34.26 -9.19 -43.44 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092794365.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.382 kcal (2) G-P(sol) polarization free energy of solvation -34.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.445 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds